Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017847

Physical Location & Seq

Genomic Coordinates Forward (+)

62761206 .. 62765219

Gene Structure 4014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0454100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTGTTTGACCTAGGTATAAAAGGTGTTGGGGTGAGAGACGCCATCTTCGAATCTTCTCTCTCTCCCTCTCTCTTCGTTCTTAGCTCGGGTCTGGGCATTTGGAGATTCTTGGGTGTGCGACTGAGTTGGGCGAGGAGAAGGAGGCTGATTGTGGAGGAAATGGGAGAGGAATCACAGCGAAAGAGAGGGTTGCTGATAGGTTTTCGATTCGACCAAGAGGAGGAGCAAGGGGACGAGGAGAAGGAGGGTGATTGTGGGGGAAATGGGAGAGGAATTTGCAGCGAAAGAGAGTGTTCGATTAGGACGGAGAAGGAAGAAGAGAGGAGCTTTTCTTTGCTTGAAAGAAACGAAGTGGAAGAACAAGAAGAAAGAAAGAAGGTGAGGGAAGTGGGGATTTTGAAGAAGAATCCCAAGATCTTGGAGGAGCAGATTCATAAGTTGAATAAGCAAATAATGGCAGCAAAAACTGGAAAGACAAATATTATGAGACTTCTACGAGATGATAATACAGAAGATCAAGATACTCAAAGACAGGCAGAGAGAATTGATATGGACACACATTTTCTCAGATTATATCAAGAAAGCGGAAACAAGGTTGTCAAAGAAAATCAAGAAGCATCTCAGCCTATGTTGATCGAACAGAACCAAAGTTTGTGCAGCAGTGATCAAAATGTCAATATATTTGGCTACCGTGACAGACAAATTACAAATGATCAAGGAGATTCTGCCATGATTGTAAATGAGGCTCTGTTTCCTTATCAAAATTCAAATATTGACAATACAACTTCGATGGGTTGTCAAAGAAAATCAAGAAGGTTGAAAGAAGCATCTCAGCCTATGTTGATCGAACAGAACCGAAGTTTGTGCAGCAGTGATCAAAATGTCAATATATTTGACTACCGTGACAGACAAATTACAAATGATCAAGGACATTCTGCCATGATTGTAAATGAGGCTCTGTTTCCTCATCAAAATTCAAATACCTGCGACTATGAATTCAAATATAAACTGAGGGTGAAGACCTGCGAGTCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

346

Amino Acids

40.04

Weight (kDa)

5.39

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017847)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014852
rosa_multiflora	Rmu_sc0006952.1_g000024 Rmu_ssc0000245.1_g000021
rosa_rugosa	Rorug05G0454100 Rorug05G0454200 Rorug05G0454300
rosa_samantha	Rh3BG314000 Rh4AG100900 Rh4DG087200 Rh5AG287500 Rh5DG542900 Rh5DG549300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1030
Acc36I	ACCTGC	2 cut(s)	995, 1034
AciI	CCGC	1 cut(s)	588
AcsI	RAATTY	4 cut(s)	276, 766, 976, 998
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	7 cut(s)	344, 403, 445, 771, 823, 981, 1003
AluBI	AGCT	2 cut(s)	87, 330
AluI	AGCT	2 cut(s)	87, 330
Alw26I	GTCTC	2 cut(s)	33, 484
Ama87I	CYCGRG	1 cut(s)	88
ApeKI	GCWGC	4 cut(s)	282, 461, 660, 870
ApoI	RAATTY	4 cut(s)	276, 766, 976, 998
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspA2I	CCTAGG	1 cut(s)	13
AsuHPI	GGTGA	4 cut(s)	46, 263, 394, 1030
AsuII	TTCGAA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	88
AvrII	CCTAGG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	1028
BbvI	GCAGC	4 cut(s)	294, 473, 672, 882
BccI	CCATC	2 cut(s)	53, 787
BcgI	CGANNNNNNTGC	2 cut(s)	849, 883
BclI	TGATCA	4 cut(s)	667, 715, 877, 925
BcoDI	GTCTC	2 cut(s)	33, 484
BfaI	CTAG	2 cut(s)	14, 1039
BfuAI	ACCTGC	2 cut(s)	995, 1034
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	4 cut(s)	283, 462, 661, 871
BlnI	CCTAGG	1 cut(s)	13
BlsI	GCNGC	4 cut(s)	284, 463, 662, 872
BmeT110I	CYCGRG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	629, 839
BpiI	GAAGAC	1 cut(s)	1028
Bpu14I	TTCGAA	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	475
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	5 cut(s)	116, 583, 638, 848, 1004
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	6 cut(s)	151, 236, 239, 254, 340, 440
BseXI	GCAGC	4 cut(s)	294, 473, 672, 882
BsgI	GTGCAG	2 cut(s)	679, 889
BsiHKCI	CYCGRG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	33, 484
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	51
Bsp143I	GATC	8 cut(s)	417, 517, 636, 667, 715, 846, 877, 925
BspACI	CCGC	1 cut(s)	588
BspCNI	CTCAG	5 cut(s)	117, 582, 637, 847, 1005
BspMI	ACCTGC	2 cut(s)	995, 1034
BspT104I	TTCGAA	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	8 cut(s)	417, 517, 636, 667, 715, 846, 877, 925
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	695, 905
Bst6I	CTCTTC	2 cut(s)	80, 315
BstACI	GRCGYC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	51
BstDEI	CTNAG	6 cut(s)	83, 125, 569, 624, 834, 1013
BstKTI	GATC	8 cut(s)	420, 520, 639, 670, 718, 849, 880, 928
BstMAI	GTCTC	2 cut(s)	33, 484
BstMBI	GATC	8 cut(s)	417, 517, 636, 667, 715, 846, 877, 925
BstV1I	GCAGC	4 cut(s)	294, 473, 672, 882
BstV2I	GAAGAC	1 cut(s)	1028
BstX2I	RGATCY	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	417
BtsI	GCAGTG	2 cut(s)	670, 880
BtsIMutI	CAGTG	2 cut(s)	670, 880
BveI	ACCTGC	2 cut(s)	995, 1034
CseI	GACGC	1 cut(s)	50
CviAII	CATG	2 cut(s)	733, 943
CviJI	RGCY	8 cut(s)	87, 148, 330, 628, 690, 749, 838, 959
CviKI_1	RGCY	8 cut(s)	87, 148, 330, 628, 690, 749, 838, 959
DdeI	CTNAG	6 cut(s)	83, 125, 569, 624, 834, 1013
DpnI	GATC	8 cut(s)	419, 519, 638, 669, 717, 848, 879, 927
DpnII	GATC	8 cut(s)	417, 517, 636, 667, 715, 846, 877, 925
DrdI	GACNNNNNNGTC	1 cut(s)	1030
DseDI	GACNNNNNNGTC	1 cut(s)	1030
Eam1104I	CTCTTC	2 cut(s)	80, 315
EarI	CTCTTC	2 cut(s)	80, 315
Eco130I	CCWWGG	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	998
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	2 cut(s)	736, 946
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	732, 942
FbaI	TGATCA	4 cut(s)	667, 715, 877, 925
Fnu4HI	GCNGC	4 cut(s)	283, 462, 661, 871
Fsp4HI	GCNGC	4 cut(s)	283, 462, 661, 871
FspBI	CTAG	2 cut(s)	14, 1039
GluI	GCNGC	4 cut(s)	283, 462, 661, 871
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	736, 946
HinfI	GANTC	8 cut(s)	53, 108, 173, 210, 409, 433, 725, 1031
HphI	GGTGA	4 cut(s)	46, 263, 394, 1030
Hpy188I	TCNGA	1 cut(s)	572
Hpy188III	TCNNGA	4 cut(s)	521, 581, 614, 813
HpyAV	CCTTC	5 cut(s)	135, 238, 307, 373, 810
HpyCH4III	ACNGT	2 cut(s)	695, 905
HpyCH4V	TGCA	3 cut(s)	282, 660, 870
HpyF3I	CTNAG	6 cut(s)	83, 125, 569, 624, 834, 1013
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	736, 946
Ksp22I	TGATCA	4 cut(s)	667, 715, 877, 925
Kzo9I	GATC	8 cut(s)	417, 517, 636, 667, 715, 846, 877, 925
LmnI	GCTCC	3 cut(s)	226, 327, 427
LpnPI	CCDG	4 cut(s)	80, 456, 521, 1000
Lsp1109I	GCAGC	4 cut(s)	294, 473, 672, 882
LweI	GCATC	2 cut(s)	629, 839
MaeI	CTAG	2 cut(s)	14, 1039
MaeIII	GTNAC	2 cut(s)	695, 905
MalI	GATC	8 cut(s)	419, 519, 638, 669, 717, 848, 879, 927
MboI	GATC	8 cut(s)	417, 517, 636, 667, 715, 846, 877, 925
MflI	RGATCY	1 cut(s)	417
MluCI	AATT	7 cut(s)	276, 546, 705, 766, 915, 976, 998
MlyI	GAGTC	1 cut(s)	1040
NdeII	GATC	8 cut(s)	417, 517, 636, 667, 715, 846, 877, 925
NlaIII	CATG	2 cut(s)	736, 946
NmuCI	GTSAC	2 cut(s)	695, 905
NspV	TTCGAA	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	7 cut(s)	53, 108, 173, 210, 409, 433, 725
PkrI	GCNGC	4 cut(s)	284, 463, 662, 872
PleI	GAGTC	1 cut(s)	1039
PpsI	GAGTC	1 cut(s)	1039
PsuI	RGATCY	1 cut(s)	417
SatI	GCNGC	4 cut(s)	283, 462, 661, 871
Sau3AI	GATC	8 cut(s)	417, 517, 636, 667, 715, 846, 877, 925
SchI	GAGTC	1 cut(s)	1040
SfaNI	GCATC	2 cut(s)	629, 839
SfuI	TTCGAA	1 cut(s)	51
Sse9I	AATT	7 cut(s)	276, 546, 705, 766, 915, 976, 998
SsiI	CCGC	1 cut(s)	588
SspI	AATATT	2 cut(s)	484, 775
SspMI	CTAG	2 cut(s)	14, 1039
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	695, 905
TaqI	TCGA	7 cut(s)	51, 208, 213, 299, 639, 791, 849
TasI	AATT	7 cut(s)	276, 546, 705, 766, 915, 976, 998
TfiI	GAWTC	7 cut(s)	53, 108, 173, 210, 409, 433, 725
TscAI	CASTG	2 cut(s)	670, 880
TseFI	GTSAC	2 cut(s)	695, 905
TseI	GCWGC	4 cut(s)	282, 461, 660, 870
Tsp45I	GTSAC	2 cut(s)	695, 905
TspDTI	ATGAA	2 cut(s)	425, 1011
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	670, 880
XapI	RAATTY	4 cut(s)	276, 766, 976, 998
XmaJI	CCTAGG	1 cut(s)	13
XspI	CTAG	2 cut(s)	14, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.