Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0017847

Physical Location & Seq

Genomic Coordinates Forward (+)

84449857 .. 84450521

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG549300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCAAAGTCATCTTCTGCAGCCATAGTTGGAGGTGCTGTTGGGGCACTTGCCTTGGTGGCAATAATCGTCGAATTCATGTCGTTCTGCAAGGCACAATGTAATAAGAACTCAAAGACTGGTTCTTCGGATCCATCTGCAATAGTTGAGCTGACTAGAGGTGGACCTAGTTCAGCAAGGCACTTCACAATGGAGGAGTTAGAGCAAGCTACCAAGCATTTTGATGAAAGCAGTCTTCTGGGATATGGAAGTTTTGGACTTGTTTATAAAGGTTTGCTCCGTGATGGGATGGTTGTGGCTATCAAAAGGCGCCCCGGTGCTCCTAGACAGGAATTTGTCTCAGAGGTAATGTACTTGTCGCAGATTCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

124

Amino Acids

13.28

Weight (kDa)

8.64

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017847)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014852
rosa_multiflora	Rmu_sc0006952.1_g000024 Rmu_ssc0000245.1_g000021
rosa_rugosa	Rorug05G0454100 Rorug05G0454200 Rorug05G0454300
rosa_samantha	Rh3BG314000 Rh4AG100900 Rh4DG087200 Rh5AG287500 Rh5DG542900 Rh5DG549300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	309
AclWI	GGATC	2 cut(s)	125, 138
AcsI	RAATTY	2 cut(s)	74, 332
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	1 cut(s)	353
AluBI	AGCT	2 cut(s)	151, 209
AluI	AGCT	2 cut(s)	151, 209
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	125, 138
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	2 cut(s)	74, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	3 cut(s)	142, 278, 283
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	3 cut(s)	156, 168, 324
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	132, 311
BmrFI	CCNGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	54, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	54, 313
BseGI	GGATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	49, 322
Bsp143I	GATC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	132, 311
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	2 cut(s)	125, 138
BspT107I	GGYRCC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	54, 313
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	294
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 59
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	4 cut(s)	23, 151, 209, 299
CviKI_1	RGCY	4 cut(s)	23, 151, 209, 299
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	340
DinI	GGCGCC	1 cut(s)	311
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	311
EheI	GGCGCC	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	82
FaiI	YATR	4 cut(s)	26, 80, 246, 267
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	3 cut(s)	156, 168, 324
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	313
HapII	CCGG	1 cut(s)	315
HhaI	GCGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	130, 343
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	20, 90, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 59
HpyF3I	CTNAG	1 cut(s)	340
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	310
KasI	GGCGCC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	282, 325
LpnPI	CCDG	4 cut(s)	105, 224, 314, 328
Lsp1109I	GCAGC	1 cut(s)	32
MaeI	CTAG	3 cut(s)	156, 168, 324
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	6, 117, 227
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	49, 322
MluCI	AATT	2 cut(s)	74, 332
Mly113I	GGCGCC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	4 cut(s)	26, 152, 187, 337
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	44, 59
NarI	GGCGCC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	2 cut(s)	132, 311
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	22
PluTI	GGCGCC	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	132, 311
PspPI	GGNCC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	222
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	49, 322
SetI	ASST	7 cut(s)	37, 153, 163, 169, 211, 274, 348
SfcI	CTRYAG	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	311
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	74, 332
SspDI	GGCGCC	1 cut(s)	309
SspMI	CTAG	3 cut(s)	156, 168, 324
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	54
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	74, 332
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	67, 240, 356
TspGWI	ACGGA	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	74, 332
XspI	CTAG	3 cut(s)	156, 168, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.