Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017847

Physical Location & Seq

Genomic Coordinates Forward (+)

31966000 .. 31976411

Gene Structure 10412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG314000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAATCTGCCATTAAAAATCATCATGAGCAGTACGTCCCCAAAAAGAGCACTGTTGGGTTCAATTCGGTGGGTTCAATTCGCTCTCTCAGTATCTTCTCTCTTCCATCAGTGGTTCAATTCGGTCCTCACGAAGGGAACGGGAGAGAGAGAATTTTGGATTTCTCAATTTTCCGTTTGCGTTTTCAGCTTCATCTGCACAATGAACGACCTCCTCAAGGCTCAATGTTTAAGTCTGTAGCTGGAGAAAGCAAAGGCTCTAAGACATGTCAAAGTCATCTTCTGCAGCCACAGTTGGAGAACTCGAAGACTGGTTCTTCGGATCCATCTGCAATAGTTGAGCTGACTAGAGGTGGACCTAGTTCAGCAAGGCACTTCACAATGGAAGAGTTAGAGCAAGCTACCAAGCATTTTGATGAAAGCAGTCTTCTGGGATATGGAAGTTTTGGATTTGTTTATAAAGGTTTGCTCCGTGATAGGACAGTTGTGGCTATCAAAAGGCGCCCCGGTGCTCCTAGACAGGAATTTGGCTCAGAGTTACATATATATGCCATTCATTTTTTGGCAGATACTAAACAGGATCCATCAACTAAACTAGAGTTTAAGCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

204

Amino Acids

22.87

Weight (kDa)

9.52

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017847)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014852
rosa_multiflora	Rmu_sc0006952.1_g000024 Rmu_ssc0000245.1_g000021
rosa_rugosa	Rorug05G0454100 Rorug05G0454200 Rorug05G0454300
rosa_samantha	Rh3BG314000 Rh4AG100900 Rh4DG087200 Rh5AG287500 Rh5DG542900 Rh5DG549300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	501
AclWI	GGATC	4 cut(s)	317, 330, 575, 588
AcsI	RAATTY	2 cut(s)	153, 524
AcyI	GRCGYC	1 cut(s)	502
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	134, 218
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	64, 78, 119
AluBI	AGCT	4 cut(s)	190, 242, 343, 401
AluI	AGCT	4 cut(s)	190, 242, 343, 401
Alw21I	GWGCWC	2 cut(s)	53, 514
AlwI	GGATC	4 cut(s)	317, 330, 575, 588
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	2 cut(s)	153, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	125, 356
AsuC2I	CCSGG	1 cut(s)	507
AvaII	GGWCC	2 cut(s)	125, 356
BamHI	GGATCC	2 cut(s)	322, 580
BanI	GGYRCC	1 cut(s)	501
BbsI	GAAGAC	2 cut(s)	314, 419
Bbv12I	GWGCWC	2 cut(s)	53, 514
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	3 cut(s)	115, 334, 592
BcnI	CCSGG	1 cut(s)	507
BfaI	CTAG	4 cut(s)	348, 360, 516, 596
BfmI	CTRYAG	2 cut(s)	237, 284
BfoI	RGCGCY	1 cut(s)	505
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	2 cut(s)	125, 356
BmgT120I	GGNCC	2 cut(s)	125, 356
BmiI	GGNNCC	3 cut(s)	324, 503, 582
BmrFI	CCNGG	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	314, 419
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 218
Bse1I	ACTGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	505
BseLI	CCNNNNNNNGG	2 cut(s)	134, 218
BseMII	CTCAG	2 cut(s)	103, 546
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	53, 514
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	134, 218
BsmFI	GGGAC	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	53, 514
Bsp143I	GATC	2 cut(s)	322, 580
BspCNI	CTCAG	2 cut(s)	102, 545
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	324, 503, 582
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	4 cut(s)	317, 330, 575, 588
BspT107I	GGYRCC	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	2 cut(s)	322, 580
BssNI	GRCGYC	1 cut(s)	502
Bst4CI	ACNGT	3 cut(s)	55, 294, 484
Bst6I	CTCTTC	2 cut(s)	108, 381
BstACI	GRCGYC	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	89, 261, 532
BstENI	CCTNNNNNAGG	2 cut(s)	132, 216
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	2 cut(s)	325, 583
BstMBI	GATC	2 cut(s)	322, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 196
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	237, 284
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	2 cut(s)	314, 419
BstX2I	RGATCY	2 cut(s)	322, 580
BstYI	RGATCY	2 cut(s)	322, 580
BtsIMutI	CAGTG	2 cut(s)	51, 117
Cac8I	GCNNGC	1 cut(s)	399
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	125, 356
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	26, 267
CviJI	RGCY	9 cut(s)	190, 222, 242, 258, 289, 343, 401, 491, 531
CviKI_1	RGCY	9 cut(s)	190, 222, 242, 258, 289, 343, 401, 491, 531
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	89, 261, 532
DinI	GGCGCC	1 cut(s)	503
DpnI	GATC	2 cut(s)	324, 582
DpnII	GATC	2 cut(s)	322, 580
Eam1104I	CTCTTC	2 cut(s)	108, 381
EarI	CTCTTC	2 cut(s)	108, 381
Eco47I	GGWCC	2 cut(s)	125, 356
EcoNI	CCTNNNNNAGG	2 cut(s)	132, 216
EgeI	GGCGCC	1 cut(s)	503
EheI	GGCGCC	1 cut(s)	503
FaeI	CATG	2 cut(s)	29, 270
FaiI	YATR	8 cut(s)	27, 268, 438, 459, 543, 545, 547, 549
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	25, 266
Fnu4HI	GCNGC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	4 cut(s)	348, 360, 516, 596
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	505
HapII	CCGG	1 cut(s)	507
HhaI	GCGC	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	502
Hin1II	CATG	2 cut(s)	29, 270
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	507
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	2 cut(s)	322, 535
Hpy188III	TCNNGA	2 cut(s)	26, 131
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	3 cut(s)	55, 294, 484
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	199, 286, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 196
HpyF3I	CTNAG	3 cut(s)	89, 261, 532
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	502
Hsp92II	CATG	2 cut(s)	29, 270
HspAI	GCGC	1 cut(s)	502
KasI	GGCGCC	1 cut(s)	501
Kzo9I	GATC	2 cut(s)	322, 580
LmnI	GCTCC	2 cut(s)	474, 517
LpnPI	CCDG	6 cut(s)	228, 297, 416, 506, 520, 563
Lsp1109I	GCAGC	1 cut(s)	298
MaeI	CTAG	4 cut(s)	348, 360, 516, 596
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	2 cut(s)	324, 582
MboI	GATC	2 cut(s)	322, 580
MboII	GAAGA	7 cut(s)	88, 95, 272, 309, 319, 398, 419
MflI	RGATCY	2 cut(s)	322, 580
MhlI	GDGCHC	2 cut(s)	53, 514
MluCI	AATT	6 cut(s)	64, 78, 119, 153, 168, 524
Mly113I	GGCGCC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	4 cut(s)	138, 222, 225, 344
MseI	TTAA	3 cut(s)	15, 231, 603
MslI	CAYNNNNRTG	2 cut(s)	414, 546
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	187, 196
NarI	GGCGCC	1 cut(s)	502
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	2 cut(s)	322, 580
NlaIII	CATG	2 cut(s)	29, 270
NlaIV	GGNNCC	3 cut(s)	324, 503, 582
NspI	RCATGY	1 cut(s)	270
PagI	TCATGA	1 cut(s)	25
PciI	ACATGT	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	288
PluTI	GGCGCC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	459
PspN4I	GGNNCC	3 cut(s)	324, 503, 582
PspPI	GGNCC	2 cut(s)	125, 356
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	322, 580
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	414, 546
SaqAI	TTAA	3 cut(s)	15, 231, 603
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	2 cut(s)	322, 580
Sau96I	GGNCC	2 cut(s)	125, 356
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	53, 514
SfcI	CTRYAG	2 cut(s)	237, 284
SfoI	GGCGCC	1 cut(s)	503
SinI	GGWCC	2 cut(s)	125, 356
SmiMI	CAYNNNNRTG	2 cut(s)	414, 546
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	6 cut(s)	64, 78, 119, 153, 168, 524
SspDI	GGCGCC	1 cut(s)	501
SspMI	CTAG	4 cut(s)	348, 360, 516, 596
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	55, 294, 484
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	305
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	6 cut(s)	64, 78, 119, 153, 168, 524
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	15, 231, 603
Tru9I	TTAA	3 cut(s)	15, 231, 603
TscAI	CASTG	2 cut(s)	58, 117
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	4 cut(s)	182, 219, 432, 545
TspGWI	ACGGA	2 cut(s)	164, 461
TspRI	CASTG	2 cut(s)	58, 117
VpaK11BI	GGWCC	2 cut(s)	125, 356
XagI	CCTNNNNNAGG	2 cut(s)	132, 216
XapI	RAATTY	2 cut(s)	153, 524
XceI	RCATGY	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XspI	CTAG	4 cut(s)	348, 360, 516, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.