Rorug05G0454200

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017847
Physical Location & Seq
Forward (+)
62767016 .. 62769222
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0454200.1

Sequence Viewer

Length: 1185 bp
ATGACGACCTCTCTGAAAAGCAGTTTCATGCCTCCGAGCTTGATCTCGAATCTTCAACAAGTTTTGGCTCTCAAAAGCGACGGTGCAGAGAAGCATGCTTCTGAACCAAACAAAGTTTCTTGTAATTCTTCTTCCTCTTCATGTTGCGCTTTGATGCCTTCTGAGGACACTAAAGACAAGCAGTGTCCAAAGCCAGTGGTTTTAGTCACAAATGGAGAGGGAATCGAGTCTCCTGGCCTCACATTTCTCGTCCAAGCTCTCCTTCTCGATTCTCATCTTGAGGTCTGCGTCTGCGCTCCTAAATCAGATAGATCAGTGGCTGGCCACTCTGTAACTGTTGGTGAGACCATTTCAGTGTCTTCTGCACAAATCAATGGCGCCACGGCTTTTGAAGTTTCCGGGACTCCTGCGGATTGTATCTCTTTAGCATTATCAGGGGCATTGTTCTCCAACTTTTCAAAGCCTGCTTTGGTAGTCAGTGGAATAAACAGAGGATCAAGTTCTGGAATCAACATGTTCTACTCGGGTGCTGTTGCTGGAGCTAGAGAGGCGTTGCTATGCGGTGTACCCTCTCTGTGCATATCAATGAATTGGAAGAAGGATGTAAGCTGTGAAAGTGATATGAAGGATGCAGCCACTGTGTGCTCACCGTTGATATGTGCAGCTGCAAAAAGCATCCAGGAGGGAGTTTTCCCCAAAAGTTGTTTACTCAATATTGAGATTCCTAGTTGTCCTTTGACAAATAAGGGCTTCAAAGTGACCAAGCAGAGTCAGTGGAGGTCCTCTTTGAGCTGGAAAGCTGTGTCAACAAACAAACATCCTCCCCCTGCAAATTTCATGTCCAATCAGCAAAGCCTTGGTATTCAACTAGCACAGCTCAGCCGCGAAGCTTCAATAGCTGGTGCAGCTCGCCGCTTGAACTCTCAGCGCAAGACTGTAGAGGTTGAATCGGTTGGTGTAGCCAGAAAAATGAGCTCCCAAAAAACAGTAAAATTCTTCCGTTTAGAGTTCTTAGAGGAGCAGCAGGAATATGTAGATGAAGATCTAGATATCAGAGCACTTGAAGATGGATTTGTTGCGATTACTCCGATTTGCTTATCTCCATCTGTTCAATCGGAAATTCAAACGTCAGTGTCGAATTGGATTGCTGGAGCAGTACTTTCTAACAACCGGTTGGCATTATAG

Protein Analysis

394

Amino Acids

41.79

Weight (kDa)

6.87

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 67 - 261 3.2e-50 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccII CGCG 1 cut(s) 885
AciI CCGC 4 cut(s) 410, 561, 883, 913
AclWI GGATC 1 cut(s) 502
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 3 cut(s) 832, 992, 1119
AcyI GRCGYC 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 642
AfaI GTAC 2 cut(s) 567, 1158
AflIII ACRYGT 1 cut(s) 513
AgeI ACCGGT 1 cut(s) 1170
AjnI CCWGG 2 cut(s) 232, 678
AjuI GAANNNNNNNTTGG 4 cut(s) 100, 132, 246, 278
Alw21I GWGCWC 3 cut(s) 647, 977, 1060
Alw26I GTCTC 2 cut(s) 234, 338
AlwI GGATC 1 cut(s) 502
AlwNI CAGNNNCTG 2 cut(s) 320, 638
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 2 cut(s) 235, 322
ApeKI GCWGC 5 cut(s) 632, 662, 665, 905, 1021
ApoI RAATTY 3 cut(s) 832, 992, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
AsiGI ACCGGT 1 cut(s) 1170
AspLEI GCGC 4 cut(s) 149, 296, 380, 930
AspS9I GGNCC 1 cut(s) 780
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 353, 639
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 1 cut(s) 780
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 977
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 3 cut(s) 647, 977, 1060
BbvI GCAGC 5 cut(s) 644, 652, 674, 917, 1033
BccI CCATC 2 cut(s) 1061, 1111
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 2 cut(s) 234, 680
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 234, 338
BfaI CTAG 4 cut(s) 543, 726, 869, 1046
BfmI CTRYAG 1 cut(s) 936
BfoI RGCGCY 1 cut(s) 381
BglII AGATCT 1 cut(s) 1042
BisI GCNGC 7 cut(s) 633, 663, 666, 883, 906, 913, 1022
BlpI GCTNAGC 1 cut(s) 878
BlsI GCNGC 7 cut(s) 634, 664, 667, 884, 907, 914, 1023
BmcAI AGTACT 1 cut(s) 1158
Bme1390I CCNGG 3 cut(s) 234, 400, 680
Bme18I GGWCC 1 cut(s) 780
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 780
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 3 cut(s) 234, 400, 680
BmsI GCATC 3 cut(s) 144, 619, 684
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 2 cut(s) 558, 1170
Bpu1102I GCTNAGC 1 cut(s) 878
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 400
BsaBI GATNNNNATC 2 cut(s) 273, 1041
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 381, 856
BsaWI WCCGGW 1 cut(s) 1170
Bse118I RCCGGY 1 cut(s) 1170
Bse1I ACTGG 1 cut(s) 194
Bse8I GATNNNNATC 2 cut(s) 273, 1041
BseBI CCWGG 2 cut(s) 234, 680
BseDI CCNNGG 2 cut(s) 381, 856
BseGI GGATG 4 cut(s) 607, 634, 675, 817
BseJI GATNNNNATC 2 cut(s) 273, 1041
BseMII CTCAG 3 cut(s) 153, 892, 938
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 1031
BseXI GCAGC 5 cut(s) 644, 652, 674, 917, 1033
BsgI GTGCAG 4 cut(s) 105, 348, 681, 924
Bsh1236I CGCG 1 cut(s) 885
BshFI GGCC 2 cut(s) 237, 324
BshNI GGYRCC 1 cut(s) 377
BshTI ACCGGT 1 cut(s) 1170
BsiHKAI GWGCWC 3 cut(s) 647, 977, 1060
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 2 cut(s) 399, 1171
BslFI GGGAC 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 234, 338
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 237, 324
Bso31I GGTCTC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 647, 977, 1060
Bsp143I GATC 4 cut(s) 42, 311, 494, 1042
Bsp1720I GCTNAGC 1 cut(s) 878
BspACI CCGC 4 cut(s) 410, 561, 883, 913
BspANI GGCC 2 cut(s) 237, 324
BspCNI CTCAG 3 cut(s) 154, 891, 937
BspFNI CGCG 1 cut(s) 885
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 1170
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 1170
BssECI CCNNGG 2 cut(s) 381, 856
BssMI GATC 4 cut(s) 42, 311, 494, 1042
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 856
Bst2UI CCWGG 2 cut(s) 234, 680
Bst4CI ACNGT 6 cut(s) 83, 337, 640, 651, 937, 988
Bst6I CTCTTC 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 378
BstC8I GCNNGC 4 cut(s) 96, 322, 465, 910
BstDEI CTNAG 4 cut(s) 162, 878, 924, 1012
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 4 cut(s) 607, 634, 675, 817
BstFNI CGCG 1 cut(s) 885
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 4 cut(s) 149, 296, 380, 930
BstKTI GATC 4 cut(s) 45, 314, 497, 1045
BstMAI GTCTC 2 cut(s) 234, 338
BstMBI GATC 4 cut(s) 42, 311, 494, 1042
BstMWI GCNNNNNNNGC 3 cut(s) 548, 896, 905
BstNI CCWGG 2 cut(s) 234, 680
BstNSI RCATGY 2 cut(s) 98, 517
BstSCI CCNGG 3 cut(s) 232, 398, 678
BstSFI CTRYAG 1 cut(s) 936
BstUI CGCG 1 cut(s) 885
BstV1I GCAGC 5 cut(s) 644, 652, 674, 917, 1033
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 1042
BstYI RGATCY 1 cut(s) 1042
BsuRI GGCC 2 cut(s) 237, 324
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 4 cut(s) 607, 634, 675, 817
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 8 cut(s) 188, 201, 321, 360, 484, 636, 779, 1137
Cac8I GCNNGC 4 cut(s) 96, 322, 465, 910
CaiI CAGNNNCTG 2 cut(s) 320, 638
CfoI GCGC 4 cut(s) 149, 296, 380, 930
Cfr10I RCCGGY 1 cut(s) 1170
Cfr13I GGNCC 1 cut(s) 780
CseI GACGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 566, 1157
CspAI ACCGGT 1 cut(s) 1170
CspCI CAANNNNNGTGG 4 cut(s) 177, 212, 370, 405
CviAII CATG 5 cut(s) 28, 95, 141, 514, 838
CviQI GTAC 2 cut(s) 566, 1157
DdeI CTNAG 4 cut(s) 162, 878, 924, 1012
DinI GGCGCC 1 cut(s) 379
DpnI GATC 4 cut(s) 44, 313, 496, 1044
DpnII GATC 4 cut(s) 42, 311, 494, 1042
DraIII CACNNNGTG 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 975
Eco130I CCWWGG 1 cut(s) 856
Eco24I GRGCYC 1 cut(s) 977
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 1051
Eco47I GGWCC 1 cut(s) 780
Eco53kI GAGCTC 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 975
EcoO109I RGGNCCY 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 232, 678
EcoRV GATATC 1 cut(s) 1051
EcoT14I CCWWGG 1 cut(s) 856
EcoT38I GRGCYC 1 cut(s) 977
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 856
FaeI CATG 5 cut(s) 31, 98, 144, 517, 841
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 415
FatI CATG 5 cut(s) 27, 94, 140, 513, 837
Fnu4HI GCNGC 7 cut(s) 633, 663, 666, 883, 906, 913, 1022
FokI GGATG 4 cut(s) 614, 641, 662, 804
FriOI GRGCYC 1 cut(s) 977
Fsp4HI GCNGC 7 cut(s) 633, 663, 666, 883, 906, 913, 1022
FspBI CTAG 4 cut(s) 543, 726, 869, 1046
GlaI GCGC 4 cut(s) 148, 295, 379, 929
GluI GCNGC 7 cut(s) 633, 663, 666, 883, 906, 913, 1022
GsuI CTGGAG 2 cut(s) 558, 1170
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 2 cut(s) 237, 324
HapII CCGG 2 cut(s) 399, 1171
HgaI GACGC 1 cut(s) 277
HhaI GCGC 4 cut(s) 149, 296, 380, 930
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 5 cut(s) 31, 98, 144, 517, 841
Hin6I GCGC 4 cut(s) 147, 294, 378, 928
HinP1I GCGC 4 cut(s) 147, 294, 378, 928
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 888
HinfI GANTC 9 cut(s) 49, 222, 227, 269, 403, 507, 721, 769, 947
HpaII CCGG 2 cut(s) 399, 1171
HphI GGTGA 2 cut(s) 353, 639
Hpy166II GTNNAC 3 cut(s) 566, 707, 807
Hpy188I TCNGA 8 cut(s) 15, 36, 103, 163, 307, 1055, 1089, 1117
Hpy188III TCNNGA 5 cut(s) 46, 266, 278, 504, 1046
Hpy8I GTNNAC 3 cut(s) 566, 707, 807
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 168, 272, 592, 619
HpyCH4III ACNGT 6 cut(s) 83, 337, 640, 651, 937, 988
HpyCH4IV ACGT 1 cut(s) 1127
HpyCH4V TGCA 8 cut(s) 86, 365, 579, 632, 662, 668, 830, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 548, 896, 905
HpyF3I CTNAG 4 cut(s) 162, 878, 924, 1012
HpySE526I ACGT 1 cut(s) 1127
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 5 cut(s) 31, 98, 144, 517, 841
HspAI GCGC 4 cut(s) 147, 294, 378, 928
KasI GGCGCC 1 cut(s) 377
Kzo9I GATC 4 cut(s) 42, 311, 494, 1042
LmnI GCTCC 5 cut(s) 301, 539, 980, 1018, 1151
Lsp1109I GCAGC 5 cut(s) 644, 652, 674, 917, 1033
LweI GCATC 3 cut(s) 144, 619, 684
MaeI CTAG 4 cut(s) 543, 726, 869, 1046
MaeII ACGT 1 cut(s) 1127
MaeIII GTNAC 3 cut(s) 205, 331, 757
MalI GATC 4 cut(s) 44, 313, 496, 1044
MboI GATC 4 cut(s) 42, 311, 494, 1042
MboII GAAGA 9 cut(s) 44, 120, 123, 129, 351, 607, 988, 1052, 1076
MflI RGATCY 1 cut(s) 1042
MhlI GDGCHC 3 cut(s) 647, 977, 1060
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 6 cut(s) 124, 589, 832, 992, 1119, 1138
MluNI TGGCCA 1 cut(s) 324
Mly113I GGCGCC 1 cut(s) 378
MlyI GAGTC 3 cut(s) 236, 397, 778
MmeI TCCRAC 1 cut(s) 474
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 353, 584
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 2 cut(s) 399, 1171
MspR9I CCNGG 3 cut(s) 234, 400, 680
MvaI CCWGG 2 cut(s) 234, 680
MvnI CGCG 1 cut(s) 885
MwoI GCNNNNNNNGC 3 cut(s) 548, 896, 905
NarI GGCGCC 1 cut(s) 378
NciI CCSGG 1 cut(s) 400
NdeII GATC 4 cut(s) 42, 311, 494, 1042
NlaIII CATG 5 cut(s) 31, 98, 144, 517, 841
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 205, 757
NspI RCATGY 2 cut(s) 98, 517
PaeI GCATGC 1 cut(s) 98
PciI ACATGT 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 1133
PfeI GAWTC 6 cut(s) 49, 222, 269, 507, 721, 947
PfoI TCCNGGA 2 cut(s) 398, 678
PinAI ACCGGT 1 cut(s) 1170
PkrI GCNGC 7 cut(s) 634, 664, 667, 884, 907, 914, 1023
PleI GAGTC 3 cut(s) 235, 397, 777
PluTI GGCGCC 1 cut(s) 381
PpsI GAGTC 3 cut(s) 235, 397, 777
PpuMI RGGWCCY 1 cut(s) 780
PscI ACATGT 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 977
Psp5II RGGWCCY 1 cut(s) 780
Psp6I CCWGG 2 cut(s) 232, 678
PspGI CCWGG 2 cut(s) 232, 678
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 780
PspPPI RGGWCCY 1 cut(s) 780
PstNI CAGNNNCTG 2 cut(s) 320, 638
PsuI RGATCY 1 cut(s) 1042
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 2 cut(s) 567, 1158
RsaNI GTAC 2 cut(s) 566, 1157
RseI CAYNNNNRTG 2 cut(s) 353, 584
SacI GAGCTC 1 cut(s) 977
SatI GCNGC 7 cut(s) 633, 663, 666, 883, 906, 913, 1022
Sau3AI GATC 4 cut(s) 42, 311, 494, 1042
Sau96I GGNCC 1 cut(s) 780
ScaI AGTACT 1 cut(s) 1158
SchI GAGTC 3 cut(s) 236, 397, 778
ScrFI CCNGG 3 cut(s) 234, 400, 680
SduI GDGCHC 3 cut(s) 647, 977, 1060
SfaNI GCATC 3 cut(s) 144, 619, 684
SfcI CTRYAG 1 cut(s) 936
SfoI GGCGCC 1 cut(s) 379
SinI GGWCC 1 cut(s) 780
SmiMI CAYNNNNRTG 2 cut(s) 353, 584
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SphI GCATGC 1 cut(s) 98
Sse9I AATT 6 cut(s) 124, 589, 832, 992, 1119, 1138
SsiI CCGC 4 cut(s) 410, 561, 883, 913
SspDI GGCGCC 1 cut(s) 377
SspI AATATT 1 cut(s) 715
SspMI CTAG 4 cut(s) 543, 726, 869, 1046
SstI GAGCTC 1 cut(s) 977
StyD4I CCNGG 3 cut(s) 232, 398, 678
StyI CCWWGG 1 cut(s) 856
TaaI ACNGT 6 cut(s) 83, 337, 640, 651, 937, 988
TaiI ACGT 1 cut(s) 1130
TaqI TCGA 4 cut(s) 47, 225, 267, 1136
TasI AATT 6 cut(s) 124, 589, 832, 992, 1119, 1138
TatI WGTACW 1 cut(s) 1156
TauI GCSGC 2 cut(s) 885, 915
TfiI GAWTC 6 cut(s) 49, 222, 269, 507, 721, 947
TscAI CASTG 8 cut(s) 188, 201, 321, 360, 484, 643, 779, 1137
TseFI GTSAC 2 cut(s) 205, 757
TseI GCWGC 5 cut(s) 632, 662, 665, 905, 1021
Tsp45I GTSAC 2 cut(s) 205, 757
TspDTI ATGAA 6 cut(s) 16, 129, 602, 638, 826, 1053
TspGWI ACGGA 1 cut(s) 989
TspRI CASTG 8 cut(s) 188, 201, 321, 360, 484, 643, 779, 1137
VpaK11BI GGWCC 1 cut(s) 780
XapI RAATTY 3 cut(s) 832, 992, 1119
XbaI TCTAGA 1 cut(s) 1045
XceI RCATGY 2 cut(s) 98, 517
XspI CTAG 4 cut(s) 543, 726, 869, 1046
ZrmI AGTACT 1 cut(s) 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.