RLG00000015185

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015529
Physical Location & Seq
Reverse (-)
62770315 .. 62770806
492 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015185

Sequence Viewer

Length: 492 bp
ATGGACCCATCAGTCAGTGCCTCAGAAATTCTGCAAACCATTAGTATGGAATTGTGTAAGATTTCATCAGTCCAGATTTCTCTCGTAGCCTTATCCCTGCTCCATTCCATTTTTGCGCAAGACTCGATCAAAGACTACCTGAACGGCCACAACTTTGCTCGAGCGGCGGTAGGTAACGAGCCCATGGTCTGGGATGATGAACTAGCGCATTTTGCTCATGACTATGCCCAAAAACACATTCATGACTGCCAACTTGTCCACTCCGGTTATAAATACGGTGAAAACCTTGCCATGAGTTGGGGTGAGATGTTTGGCTTAGATGCTGTGAGCATGTGGGTGGGGGAGAAGCCGAATTACGATTACAACTCGAATTCTTGCGTCGGTGGCGAATGTGGGCATTATTTGCAAGTCATTTGGAACACCTCGAATCATCTAGGGTGTGCCAAAGTGAGGTGCAACAATGGGGGTACTTGGGATCGGGTGCAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

164

Amino Acids

18.16

Weight (kDa)

5.29

Isoelectric Point (pI)

26.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 47 - 157 2.9e-14 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
AasI GACNNNNNNGTC 1 cut(s) 11
Acc16I TGCGCA 1 cut(s) 117
AccB7I CCANNNNNTGG 2 cut(s) 189, 297
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 2 cut(s) 164, 167
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 2 cut(s) 27, 370
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 3 cut(s) 189, 297, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 27, 370
AspLEI GCGC 2 cut(s) 118, 208
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 290, 314
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 160
BfaI CTAG 2 cut(s) 203, 434
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 297, 450
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 189, 297, 450
BseMII CTCAG 1 cut(s) 36
BshFI GGCC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 3 cut(s) 189, 297, 450
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 126, 475
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 2 cut(s) 164, 167
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 35
BspHI TCATGA 2 cut(s) 217, 241
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 483
BsrBI CCGCTC 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 126, 475
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 403
BstDEI CTNAG 2 cut(s) 22, 316
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 199
BstHHI GCGC 2 cut(s) 118, 208
BstKTI GATC 2 cut(s) 129, 478
BstMBI GATC 2 cut(s) 126, 475
BstMWI GCNNNNNNNGC 4 cut(s) 164, 212, 384, 403
BstNSI RCATGY 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 46
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 22
CciI TCATGA 2 cut(s) 217, 241
CfoI GCGC 2 cut(s) 118, 208
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 468
CviAII CATG 5 cut(s) 184, 218, 242, 292, 331
CviJI RGCY 5 cut(s) 89, 147, 181, 315, 349
CviKI_1 RGCY 5 cut(s) 89, 147, 181, 315, 349
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 2 cut(s) 22, 316
DpnI GATC 2 cut(s) 128, 477
DpnII GATC 2 cut(s) 126, 475
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 5 cut(s) 187, 221, 245, 295, 334
FaiI YATR 9 cut(s) 47, 185, 219, 225, 243, 270, 293, 332, 490
FatI CATG 5 cut(s) 183, 217, 241, 291, 330
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 2 cut(s) 203, 434
FspI TGCGCA 1 cut(s) 117
GlaI GCGC 2 cut(s) 117, 207
GluI GCNGC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 367
HhaI GCGC 2 cut(s) 118, 208
Hin1II CATG 5 cut(s) 187, 221, 245, 295, 334
Hin6I GCGC 2 cut(s) 116, 206
HinP1I GCGC 2 cut(s) 116, 206
HinfI GANTC 2 cut(s) 122, 427
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 290, 314
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 73, 218, 242
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 34, 406, 456, 484
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 212, 384, 403
HpyF3I CTNAG 2 cut(s) 22, 316
Hsp92II CATG 5 cut(s) 187, 221, 245, 295, 334
HspAI GCGC 2 cut(s) 116, 206
Kzo9I GATC 2 cut(s) 126, 475
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 5 cut(s) 86, 110, 152, 175, 277
LweI GCATC 1 cut(s) 310
MaeI CTAG 2 cut(s) 203, 434
MaeIII GTNAC 1 cut(s) 173
MalI GATC 2 cut(s) 128, 477
MbiI CCGCTC 1 cut(s) 164
MboI GATC 2 cut(s) 126, 475
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 27, 50, 352, 370
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 3 cut(s) 31, 433, 444
MslI CAYNNNNRTG 4 cut(s) 44, 222, 240, 335
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 164, 212, 384, 403
NcoI CCATGG 1 cut(s) 183
NdeII GATC 2 cut(s) 126, 475
NlaIII CATG 5 cut(s) 187, 221, 245, 295, 334
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 117
NspI RCATGY 1 cut(s) 334
PaeR7I CTCGAG 1 cut(s) 159
PagI TCATGA 2 cut(s) 217, 241
PfeI GAWTC 1 cut(s) 427
PflMI CCANNNNNTGG 2 cut(s) 189, 297
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PsiI TTATAA 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 159
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 4 cut(s) 44, 222, 240, 335
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 2 cut(s) 126, 475
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 183
SetI ASST 5 cut(s) 141, 175, 288, 425, 455
SfaNI GCATC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 159
SmiMI CAYNNNNRTG 4 cut(s) 44, 222, 240, 335
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 4 cut(s) 27, 50, 352, 370
SsiI CCGC 2 cut(s) 164, 167
SspMI CTAG 2 cut(s) 203, 434
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 4 cut(s) 125, 160, 368, 425
TasI AATT 4 cut(s) 27, 50, 352, 370
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 427
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 54, 213, 230
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 2 cut(s) 189, 297
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 27, 370
XceI RCATGY 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 159
XspI CTAG 2 cut(s) 203, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.