Rw6G003690

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015529
Physical Location & Seq
Forward (+)
6097877 .. 6098497
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003690.1

Sequence Viewer

Length: 552 bp
ATGGACCCATCAGTCAGTGCCTCAGAAACTCTACAAACCATCAGTATGGAATTGTGTAAGATTTCATCAGTCCTGATTTCTCTCGTAGCCTTATCCCTACTCCATTCCACTTTTGCGCAAGACTCAATCAAAGACTACCTGAACGGCCACAACTTTGCTCGAGCGGCGGTAGGTAACGAGCCCATGGTCTGGGATGATGAACTAGCGCGTTTTGCTCAAGACTATGCCCAAAAACACATTCATGACTGCCAACTTGTCCACTCCGGTTATAAATACGGTGAAAACCTTGCCATGAGTTGGGGTGAGATGTTTGGCTTAGATGCTGTGAGCATGTGGGTGGGGGAGAAGCCGAATTACGATTACAACTCGAATTCTTGCGTCGGTGGTGAATGTGGCCATTATTTACAGGTCATTTGGAACACCTCGACTCATCTGGGGTGTGCCAAAGCGAGGTGCAACAATGGGGGTACTTGGATCGGGTGCAACTATAATCCCCCGCCAAGTGGGGATAGGCCTTATAATCCCCTGCCACGTGGGGATAGGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

183

Amino Acids

20.27

Weight (kDa)

5.36

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 47 - 163 5.3e-17 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 270, 519
AasI GACNNNNNNGTC 1 cut(s) 11
Acc16I TGCGCA 1 cut(s) 117
AccB7I CCANNNNNTGG 2 cut(s) 189, 297
AccBSI CCGCTC 1 cut(s) 164
AccII CGCG 1 cut(s) 208
AciI CCGC 3 cut(s) 164, 167, 497
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 2 cut(s) 145, 394
AcsI RAATTY 1 cut(s) 370
AcvI CACGTG 1 cut(s) 533
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 189, 297, 450, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 4 cut(s) 145, 394, 512, 542
ApoI RAATTY 1 cut(s) 370
AspLEI GCGC 2 cut(s) 118, 208
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 290, 314, 398
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 396
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BbrPI CACGTG 1 cut(s) 533
BccI CCATC 2 cut(s) 16, 47
BceAI ACGGC 1 cut(s) 160
BfaI CTAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 297, 450, 503
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 4 cut(s) 189, 297, 450, 503
BseMII CTCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 4 cut(s) 147, 396, 514, 544
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 4 cut(s) 189, 297, 450, 503
BsnI GGCC 4 cut(s) 147, 396, 514, 544
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 474
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 3 cut(s) 164, 167, 497
BspANI GGCC 4 cut(s) 147, 396, 514, 544
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 482
BsrBI CCGCTC 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 533
BstDEI CTNAG 2 cut(s) 22, 316
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 208
BstHHI GCGC 2 cut(s) 118, 208
BstKTI GATC 1 cut(s) 477
BstMBI GATC 1 cut(s) 474
BstMWI GCNNNNNNNGC 2 cut(s) 164, 212
BstNSI RCATGY 1 cut(s) 334
BstUI CGCG 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 46
BsuRI GGCC 4 cut(s) 147, 396, 514, 544
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 22
CciI TCATGA 1 cut(s) 241
CfoI GCGC 2 cut(s) 118, 208
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 468
CviAII CATG 4 cut(s) 184, 242, 292, 331
CviJI RGCY 8 cut(s) 89, 147, 181, 315, 349, 396, 514, 544
CviKI_1 RGCY 8 cut(s) 89, 147, 181, 315, 349, 396, 514, 544
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 2 cut(s) 22, 316
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 2 cut(s) 145, 394
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 2 cut(s) 514, 544
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 4
Eco72I CACGTG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 4 cut(s) 187, 245, 295, 334
FaiI YATR 9 cut(s) 47, 185, 225, 243, 270, 293, 332, 489, 519
FatI CATG 4 cut(s) 183, 241, 291, 330
FauI CCCGC 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 203
FspI TGCGCA 1 cut(s) 117
GlaI GCGC 2 cut(s) 117, 207
GluI GCNGC 1 cut(s) 165
HaeIII GGCC 4 cut(s) 147, 396, 514, 544
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 367
HhaI GCGC 2 cut(s) 118, 208
Hin1II CATG 4 cut(s) 187, 245, 295, 334
Hin6I GCGC 2 cut(s) 116, 206
HinP1I GCGC 2 cut(s) 116, 206
HinfI GANTC 2 cut(s) 122, 427
HpaII CCGG 1 cut(s) 264
HphI GGTGA 3 cut(s) 290, 314, 398
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 73, 218, 242
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 2 cut(s) 456, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 212
HpyF3I CTNAG 2 cut(s) 22, 316
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 4 cut(s) 187, 245, 295, 334
HspAI GCGC 2 cut(s) 116, 206
Kzo9I GATC 1 cut(s) 474
LpnPI CCDG 7 cut(s) 86, 152, 175, 277, 392, 419, 539
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 476
MbiI CCGCTC 1 cut(s) 164
MboI GATC 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 3 cut(s) 50, 352, 370
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 2 cut(s) 116, 421
MnlI CCTC 3 cut(s) 31, 433, 444
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MslI CAYNNNNRTG 3 cut(s) 44, 240, 335
Msp20I TGGCCA 1 cut(s) 396
MspI CCGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 164, 212
NcoI CCATGG 1 cut(s) 183
NdeII GATC 1 cut(s) 474
NlaIII CATG 4 cut(s) 187, 245, 295, 334
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 117
NspI RCATGY 1 cut(s) 334
PaeR7I CTCGAG 1 cut(s) 159
PagI TCATGA 1 cut(s) 241
PceI AGGCCT 2 cut(s) 514, 544
PflMI CCANNNNNTGG 2 cut(s) 189, 297
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 2 cut(s) 116, 421
PmaCI CACGTG 1 cut(s) 533
PmlI CACGTG 1 cut(s) 533
PpsI GAGTC 2 cut(s) 116, 421
Ppu21I YACGTR 1 cut(s) 533
PsiI TTATAA 2 cut(s) 270, 519
PspCI CACGTG 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 159
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 3 cut(s) 44, 240, 335
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 474
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 116, 421
SduI GDGCHC 1 cut(s) 183
SetI ASST 7 cut(s) 141, 175, 288, 411, 425, 455, 535
SfaNI GCATC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 159
SmiMI CAYNNNNRTG 3 cut(s) 44, 240, 335
SmlI CTYRAG 2 cut(s) 159, 216
SmoI CTYRAG 2 cut(s) 159, 216
Sse9I AATT 3 cut(s) 50, 352, 370
SseBI AGGCCT 2 cut(s) 514, 544
SsiI CCGC 3 cut(s) 164, 167, 497
SspMI CTAG 1 cut(s) 203
StuI AGGCCT 2 cut(s) 514, 544
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 535
TaqI TCGA 3 cut(s) 160, 368, 425
TasI AATT 3 cut(s) 50, 352, 370
TauI GCSGC 1 cut(s) 167
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 54, 213, 230
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 2 cut(s) 189, 297
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 370
XceI RCATGY 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 159
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.