Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8245055.1

Orthogroup ID

OG0015529

Physical Location & Seq

Genomic Coordinates Reverse (-)

67 .. 672

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8245055.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgcagattacgctagatgtccacattgttcactataaatacaccaattatctcatggacccatcagtcagtgcctcagaaactctacaaaccatcagtatggaattgtgtaagatttcatcagtcctgatttctctcgtagccttatccctactccattccatttttgcgcaagactcaatcaaagactacctgaacggccacaactttgctcgagcggcggtaggtaacgagcccatggtctgggatgatgaactagcgcgttttgctcaagactatgcccaaaaacacattcatgactgccaacttgtccactccggttataaatacggtgaaaaccttgccatgagttggggtgagatgtttggcttagatgctgtgagcatgtgggtgggggagaagccgaattacgattacaactcgaattcttgcgtcggtggtgaatgtggccattatttacaggtcatttggaacacctcgactcatctggggtgtgccaaagcgaggtgcaacaatgggggtacttggatcgggtgcaactataatcccccgccaagtggggataggccttataatcccctgccacgtggggataggccttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

201

Amino Acids

22.52

Weight (kDa)

5.63

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02920
rosa_chinensis	RchiOBHm_Chr5g0015551 RchiOBHm_Chr6g0247701
rosa_laevigata	RLG00000015185
rosa_multiflora	Rmu_co8245055.1_g000001 Rmu_sc0003064.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060960 Rroxscaffold_7G00213730
rosa_rugosa	Rorug05G0028400 Rorug05G0528000
rosa_samantha	Rh5BG120500 Rh5CG130800 Rh5DG119400 Rh6AG043000
rosa_wichuraiana	Rw5G010500 Rw6G003690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	324, 573
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc16I	TGCGCA	1 cut(s)	171
AccB7I	CCANNNNNTGG	2 cut(s)	243, 351
AccBSI	CCGCTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	262
AciI	CCGC	3 cut(s)	218, 221, 551
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	2 cut(s)	199, 448
AcsI	RAATTY	1 cut(s)	424
AcvI	CACGTG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	4 cut(s)	243, 351, 504, 557
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AlwI	GGATC	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	4 cut(s)	199, 448, 566, 596
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	2 cut(s)	172, 262
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	344, 368, 452
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BbrPI	CACGTG	1 cut(s)	587
BccI	CCATC	2 cut(s)	70, 101
BceAI	ACGGC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	14, 257
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	4 cut(s)	243, 351, 504, 557
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	4 cut(s)	243, 351, 504, 557
BseMII	CTCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	262
BshFI	GGCC	4 cut(s)	201, 450, 568, 598
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	4 cut(s)	243, 351, 504, 557
BsnI	GGCC	4 cut(s)	201, 450, 568, 598
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	528
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	3 cut(s)	218, 221, 551
BspANI	GGCC	4 cut(s)	201, 450, 568, 598
BspCNI	CTCAG	1 cut(s)	89
BspFNI	CGCG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	587
BstDEI	CTNAG	2 cut(s)	76, 370
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	262
BstHHI	GCGC	2 cut(s)	172, 262
BstKTI	GATC	1 cut(s)	531
BstMBI	GATC	1 cut(s)	528
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 218, 266
BstNSI	RCATGY	1 cut(s)	388
BstUI	CGCG	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	4 cut(s)	201, 450, 568, 598
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	76
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	2 cut(s)	172, 262
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	5 cut(s)	55, 238, 296, 346, 385
CviJI	RGCY	8 cut(s)	143, 201, 235, 369, 403, 450, 568, 598
CviKI_1	RGCY	8 cut(s)	143, 201, 235, 369, 403, 450, 568, 598
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	2 cut(s)	76, 370
DpnI	GATC	1 cut(s)	530
DpnII	GATC	1 cut(s)	528
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	2 cut(s)	199, 448
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	2 cut(s)	568, 598
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	58
Eco72I	CACGTG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	5 cut(s)	58, 241, 299, 349, 388
FatI	CATG	5 cut(s)	54, 237, 295, 345, 384
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	14, 257
FspI	TGCGCA	1 cut(s)	171
GlaI	GCGC	2 cut(s)	171, 261
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	4 cut(s)	201, 450, 568, 598
HapII	CCGG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	2 cut(s)	172, 262
Hin1II	CATG	5 cut(s)	58, 241, 299, 349, 388
Hin6I	GCGC	2 cut(s)	170, 260
HinP1I	GCGC	2 cut(s)	170, 260
HinfI	GANTC	2 cut(s)	176, 481
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	344, 368, 452
Hpy166II	GTNNAC	3 cut(s)	22, 31, 313
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	3 cut(s)	127, 272, 296
Hpy8I	GTNNAC	3 cut(s)	22, 31, 313
Hpy99I	CGWCG	1 cut(s)	437
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	3 cut(s)	4, 510, 537
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 218, 266
HpyF3I	CTNAG	2 cut(s)	76, 370
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	5 cut(s)	58, 241, 299, 349, 388
HspAI	GCGC	2 cut(s)	170, 260
Kzo9I	GATC	1 cut(s)	528
LpnPI	CCDG	7 cut(s)	140, 206, 229, 331, 446, 473, 593
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	14, 257
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	1 cut(s)	530
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	4 cut(s)	46, 104, 406, 424
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	170, 475
MnlI	CCTC	3 cut(s)	85, 487, 498
Mox20I	TGGCCA	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	450
MslI	CAYNNNNRTG	3 cut(s)	98, 294, 389
Msp20I	TGGCCA	1 cut(s)	450
MspI	CCGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	3 cut(s)	10, 218, 266
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	528
NlaIII	CATG	5 cut(s)	58, 241, 299, 349, 388
NlaIV	GGNNCC	1 cut(s)	60
NsbI	TGCGCA	1 cut(s)	171
NspI	RCATGY	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	213
PagI	TCATGA	1 cut(s)	295
PceI	AGGCCT	2 cut(s)	568, 598
PflMI	CCANNNNNTGG	2 cut(s)	243, 351
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	2 cut(s)	170, 475
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
PpsI	GAGTC	2 cut(s)	170, 475
Ppu21I	YACGTR	1 cut(s)	587
PsiI	TTATAA	2 cut(s)	324, 573
PspCI	CACGTG	1 cut(s)	587
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	58
PspXI	VCTCGAGB	1 cut(s)	213
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	3 cut(s)	98, 294, 389
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	528
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	2 cut(s)	170, 475
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	7 cut(s)	195, 229, 342, 465, 479, 509, 589
SfaNI	GCATC	1 cut(s)	364
Sfr274I	CTCGAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	58
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	3 cut(s)	98, 294, 389
SmlI	CTYRAG	2 cut(s)	213, 270
SmoI	CTYRAG	2 cut(s)	213, 270
Sse9I	AATT	4 cut(s)	46, 104, 406, 424
SseBI	AGGCCT	2 cut(s)	568, 598
SsiI	CCGC	3 cut(s)	218, 221, 551
SspMI	CTAG	2 cut(s)	14, 257
StuI	AGGCCT	2 cut(s)	568, 598
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	3 cut(s)	214, 422, 479
TasI	AATT	4 cut(s)	46, 104, 406, 424
TauI	GCSGC	1 cut(s)	221
TscAI	CASTG	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	108, 267, 284
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	2 cut(s)	243, 351
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	213
XspI	CTAG	2 cut(s)	14, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.