Rroxscaffold_1G00060960

peptidase inhibitor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015529
Physical Location & Seq
Forward (+)
83151922 .. 83153831
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060960.1

Sequence Viewer

Length: 483 bp
ATGATTTGCGGCTCAATGAGGTCTAAGATTTGTGGCCTTAATCTTAGGCCACAAATCTTAGGTGTCATGCTTTGTCTTATCCACAGAATCAAAGACTTCCTGAACGGCCACAACTTTGCTCGAAGGGAGGTAGGTAACAAAGACCTGGAGTGGGATCCTGTACTAGAGCGTTATGCTACTGACTATGCCAAAAAACACATTCATGACTGCCAACTTATCCACACCGGTGGTCCATACGGTGAAAACCTTGCCTCGAGCCCTATTGAGATGTTCGGCTTAGATGCTGTGAGCATGTGGGTGTATGAGAAGAAATATTACAATTACGAGACGAAATCTTGCGTCGGTGGCGAATGTGGGCATTATTTGCAGGTCATTTGGAATACCACGACTCATCTGGGGTGTGCCAAATTGAGGTGCGACAATGGGGGTACTTGGATCGGGTGCAACTATAATCCCCCTCCACAGGGAGACTTGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

160

Amino Acids

18.16

Weight (kDa)

7.02

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 34 - 150 9e-17 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AciI CCGC 1 cut(s) 9
AclWI GGATC 3 cut(s) 149, 162, 443
AcoI YGGCCR 1 cut(s) 106
AfaI GTAC 2 cut(s) 162, 430
AfiI CCNNNNNNNGG 4 cut(s) 151, 411, 463, 464
AgeI ACCGGT 1 cut(s) 224
AjnI CCWGG 1 cut(s) 144
AleI CACNNNNGTG 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 320, 462
AlwI GGATC 3 cut(s) 149, 162, 443
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 3 cut(s) 34, 47, 106
AsiGI ACCGGT 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 1 cut(s) 230
BamHI GGATCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 260
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 320, 462
BfaI CTAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 411, 463, 464
Bse118I RCCGGY 1 cut(s) 224
BseBI CCWGG 1 cut(s) 146
BseLI CCNNNNNNNGG 4 cut(s) 151, 411, 463, 464
BshFI GGCC 3 cut(s) 36, 49, 108
BshTI ACCGGT 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 4 cut(s) 151, 411, 463, 464
BsmAI GTCTC 2 cut(s) 320, 462
BsmBI CGTCTC 1 cut(s) 320
BsnI GGCC 3 cut(s) 36, 49, 108
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 154, 435
BspACI CCGC 1 cut(s) 9
BspANI GGCC 3 cut(s) 36, 49, 108
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 3 cut(s) 149, 162, 443
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssMI GATC 2 cut(s) 154, 435
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 364
BstDEI CTNAG 4 cut(s) 24, 44, 58, 277
BstKTI GATC 2 cut(s) 157, 438
BstMAI GTCTC 2 cut(s) 320, 462
BstMBI GATC 2 cut(s) 154, 435
BstMWI GCNNNNNNNGC 2 cut(s) 345, 364
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 3 cut(s) 36, 49, 108
BveI ACCTGC 1 cut(s) 358
CciI TCATGA 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 161, 429
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 3 cut(s) 67, 203, 292
CviJI RGCY 6 cut(s) 12, 36, 49, 108, 258, 276
CviKI_1 RGCY 6 cut(s) 12, 36, 49, 108, 258, 276
CviQI GTAC 2 cut(s) 161, 429
DdeI CTNAG 4 cut(s) 24, 44, 58, 277
DpnI GATC 2 cut(s) 156, 437
DpnII GATC 2 cut(s) 154, 435
EaeI YGGCCR 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 260
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 3 cut(s) 70, 206, 295
FaiI YATR 8 cut(s) 68, 174, 186, 204, 235, 293, 303, 450
FatI CATG 3 cut(s) 66, 202, 291
Fnu4HI GCNGC 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 3 cut(s) 36, 49, 108
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 328
Hin1II CATG 3 cut(s) 70, 206, 295
HinfI GANTC 2 cut(s) 87, 388
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 251
Hpy188III TCNNGA 2 cut(s) 100, 203
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 367, 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 345, 364
HpyF3I CTNAG 4 cut(s) 24, 44, 58, 277
Hsp92II CATG 3 cut(s) 70, 206, 295
Kzo9I GATC 2 cut(s) 154, 435
LpnPI CCDG 8 cut(s) 113, 131, 158, 171, 238, 353, 380, 449
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 156, 437
MboI GATC 2 cut(s) 154, 435
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 2 cut(s) 319, 407
MlyI GAGTC 1 cut(s) 382
MnlI CCTC 5 cut(s) 12, 121, 262, 405, 468
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 3 cut(s) 201, 225, 296
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 345, 364
NdeII GATC 2 cut(s) 154, 435
NlaIII CATG 3 cut(s) 70, 206, 295
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 253
PagI TCATGA 1 cut(s) 202
PfeI GAWTC 1 cut(s) 87
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 230
PspXI VCTCGAGB 1 cut(s) 253
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 2 cut(s) 162, 430
RsaNI GTAC 2 cut(s) 161, 429
RseI CAYNNNNRTG 3 cut(s) 201, 225, 296
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 154, 435
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 260
SetI ASST 8 cut(s) 23, 64, 132, 136, 147, 249, 372, 416
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 253
SgrAI CRCCGGYG 1 cut(s) 224
SinI GGWCC 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 253
SmiMI CAYNNNNRTG 3 cut(s) 201, 225, 296
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 2 cut(s) 319, 407
SsiI CCGC 1 cut(s) 9
SspI AATATT 1 cut(s) 314
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 121, 254
TasI AATT 2 cut(s) 319, 407
TatI WGTACW 1 cut(s) 160
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 230
XceI RCATGY 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XhoI CTCGAG 1 cut(s) 253
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.