Rh5BG120500

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015529
Physical Location & Seq
Reverse (-)
11406517 .. 11407015
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG120500.1

Sequence Viewer

Length: 477 bp
ATGGAATTTTGTAAGATTTCATCAGTCTGGATTTCTCTCGTAGCCTTATCCTTACTCCATTCCATTTATGCACAAGACAGAATCATAGACTTCCTGAACGGCCACAACTTTGCTCGAAGGGAGGTAGGTAACAAAGACCTGAAGTGGGATCCTGTACTAGAGCGTTATGCTACTGACTATGCCAAAAAACACATTAATGACTGCCAACTTATCCACACCGGTGGTCCATACGGTGAAAACCTTGCCTCGAGCCCTATTGAGATGTTCGGCTTAGATGCTGTGAGCATGTGGGTGTATGAGAAGAAAAATTACAATTACGAGACGAAATCTTGCGTCGGTGGCGAATGTGGGCATTATTTGCAGGTCATTTGGAATACCTCGACTCATCTGGGGTGTGCCAAATTGAGGTGCGACAATGGGGGTACTTGGATCGGGTGCAACTATAATCCCCCTCCACAGGGAGACTTGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

158

Amino Acids

17.91

Weight (kDa)

6.04

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 148 2.6e-17 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AclWI GGATC 3 cut(s) 143, 156, 437
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 2 cut(s) 156, 424
AfiI CCNNNNNNNGG 4 cut(s) 145, 405, 457, 458
AgeI ACCGGT 1 cut(s) 218
AleI CACNNNNGTG 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 314, 456
AlwI GGATC 3 cut(s) 143, 156, 437
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 5
AseI ATTAAT 1 cut(s) 195
AsiGI ACCGGT 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BceAI ACGGC 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 314, 456
BfaI CTAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 150
BmsI GCATC 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 405, 457, 458
Bse118I RCCGGY 1 cut(s) 218
BseLI CCNNNNNNNGG 4 cut(s) 145, 405, 457, 458
BshFI GGCC 1 cut(s) 102
BshTI ACCGGT 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 4 cut(s) 145, 405, 457, 458
BsmAI GTCTC 2 cut(s) 314, 456
BsmBI CGTCTC 1 cut(s) 314
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 148, 429
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 3 cut(s) 143, 156, 437
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssMI GATC 2 cut(s) 148, 429
Bst4CI ACNGT 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 271
BstKTI GATC 2 cut(s) 151, 432
BstMAI GTCTC 2 cut(s) 314, 456
BstMBI GATC 2 cut(s) 148, 429
BstMWI GCNNNNNNNGC 2 cut(s) 339, 358
BstNSI RCATGY 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 1 cut(s) 102
BveI ACCTGC 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 155, 423
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 1 cut(s) 286
CviJI RGCY 4 cut(s) 44, 102, 252, 270
CviKI_1 RGCY 4 cut(s) 44, 102, 252, 270
CviQI GTAC 2 cut(s) 155, 423
DdeI CTNAG 1 cut(s) 271
DpnI GATC 2 cut(s) 150, 431
DpnII GATC 2 cut(s) 148, 429
EaeI YGGCCR 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 1 cut(s) 289
FaiI YATR 8 cut(s) 69, 86, 168, 180, 229, 287, 297, 444
FatI CATG 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 254
FspBI CTAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 322
Hin1II CATG 1 cut(s) 289
HinfI GANTC 2 cut(s) 81, 382
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 245
Hpy188III TCNNGA 2 cut(s) 28, 94
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 71, 361, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 358
HpyF3I CTNAG 1 cut(s) 271
Hsp92II CATG 1 cut(s) 289
Kzo9I GATC 2 cut(s) 148, 429
LpnPI CCDG 8 cut(s) 13, 107, 152, 165, 232, 347, 374, 443
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 150, 431
MboI GATC 2 cut(s) 148, 429
MboII GAAGA 1 cut(s) 313
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 4 cut(s) 5, 307, 313, 401
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 5 cut(s) 115, 256, 388, 399, 462
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 3 cut(s) 195, 219, 290
MspI CCGG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 339, 358
NdeII GATC 2 cut(s) 148, 429
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 150
NspI RCATGY 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 247
PfeI GAWTC 1 cut(s) 81
PinAI ACCGGT 1 cut(s) 218
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 247
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 2 cut(s) 156, 424
RsaNI GTAC 2 cut(s) 155, 423
RseI CAYNNNNRTG 3 cut(s) 195, 219, 290
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 2 cut(s) 148, 429
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 376
SduI GDGCHC 1 cut(s) 254
SetI ASST 7 cut(s) 126, 130, 141, 243, 366, 380, 410
SfaNI GCATC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 247
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 247
SmiMI CAYNNNNRTG 3 cut(s) 195, 219, 290
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 4 cut(s) 5, 307, 313, 401
SspMI CTAG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 3 cut(s) 115, 248, 380
TasI AATT 4 cut(s) 5, 307, 313, 401
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 9
VpaK11BI GGWCC 1 cut(s) 224
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 247
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.