Rroxscaffold_7G00213730

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015529
Physical Location & Seq
Reverse (-)
64173864 .. 64179138
5275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213730.1

Sequence Viewer

Length: 639 bp
ATGGACCCATCAGTCAGTGCCTCAGAAATTCTACAAACCATCAGCATGGAATTGTGTAAGATTTCATCAGTCCTGATTTCTCTCGTAGCCTTATCCCTGCTCCATTCCATTTTTGCGCAAGACTCGATCAAAGACTACCTGAACGGCCACAACTTTGCTCGAGCAGCTGTAGGTAACGAGCCCATGGTCTGGGATGATGAACTAGCGCTCTTTGCTCAAGACTATGCCCAAAAACACATTCATGACTGCCAACTTGTCCACTCCGGTTATAAATACGGTGAAAACCTTGCCATGAGTTGGGGTGAGATGTTTGGCTTAGATGCTGTGAGCATGTGGGTGGGGGAGAAGCCGAATTACGATTACAACTCGAATTCTTGCGTCGGTGGCGAATGTGGGCATTATTTGCAAGTCATTTGGAACACCTCGACTCATCTGGGGTGTGCCAAAGCAAGGTGCAACAATGGGGGTACTTGGATCGGGTGCAACTATAATCCCCGCCAAGTGGGGATAGGCCTTATAATCCCCTGCCACCTTACTTCACTTAGAAGGAAGAAAGAACGTGGAAGTCGTAAGATCAATACACCACTTGATATTATTTTCATTCCAACCTACATACCTGAAAACAGTGATCATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

212

Amino Acids

23.61

Weight (kDa)

5.95

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 47 - 163 2.2e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 270, 518
AasI GACNNNNNNGTC 1 cut(s) 11
Acc16I TGCGCA 1 cut(s) 117
AccB7I CCANNNNNTGG 2 cut(s) 189, 297
AciI CCGC 1 cut(s) 496
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 2 cut(s) 27, 370
AfaI GTAC 1 cut(s) 469
AfeI AGCGCT 1 cut(s) 207
AfiI CCNNNNNNNGG 4 cut(s) 189, 297, 450, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 159
Aor51HI AGCGCT 1 cut(s) 207
AoxI GGCC 2 cut(s) 145, 511
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 27, 370
AspLEI GCGC 2 cut(s) 118, 208
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 290, 314
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BbvI GCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 16, 47
BceAI ACGGC 1 cut(s) 160
BclI TGATCA 1 cut(s) 628
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 209
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 297, 450, 502
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 4 cut(s) 189, 297, 450, 502
BseMII CTCAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 147, 513
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 4 cut(s) 189, 297, 450, 502
BsnI GGCC 2 cut(s) 147, 513
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 4 cut(s) 126, 474, 573, 628
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 1 cut(s) 496
BspANI GGCC 2 cut(s) 147, 513
BspCNI CTCAG 1 cut(s) 35
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 482
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 4 cut(s) 126, 474, 573, 628
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 278, 626
BstAPI GCANNNNNTGC 1 cut(s) 403
BstDEI CTNAG 3 cut(s) 22, 316, 542
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 2 cut(s) 118, 208
BstKTI GATC 4 cut(s) 129, 477, 576, 631
BstMBI GATC 4 cut(s) 126, 474, 573, 628
BstMWI GCNNNNNNNGC 4 cut(s) 164, 212, 384, 403
BstNSI RCATGY 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 46
BsuRI GGCC 2 cut(s) 147, 513
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 22, 631
CciI TCATGA 1 cut(s) 241
CfoI GCGC 2 cut(s) 118, 208
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 468
CviAII CATG 5 cut(s) 46, 184, 242, 292, 331
CviJI RGCY 7 cut(s) 89, 147, 167, 181, 315, 349, 513
CviKI_1 RGCY 7 cut(s) 89, 147, 167, 181, 315, 349, 513
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 3 cut(s) 22, 316, 542
DpnI GATC 4 cut(s) 128, 476, 575, 630
DpnII GATC 4 cut(s) 126, 474, 573, 628
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 5 cut(s) 49, 187, 245, 295, 334
FatI CATG 5 cut(s) 45, 183, 241, 291, 330
FauI CCCGC 1 cut(s) 503
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 203
FspI TGCGCA 1 cut(s) 117
GlaI GCGC 2 cut(s) 117, 207
GluI GCNGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 2 cut(s) 147, 513
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 367
HhaI GCGC 2 cut(s) 118, 208
Hin1II CATG 5 cut(s) 49, 187, 245, 295, 334
Hin6I GCGC 2 cut(s) 116, 206
HinP1I GCGC 2 cut(s) 116, 206
HinfI GANTC 2 cut(s) 122, 427
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 290, 314
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 73, 218, 242
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 2 cut(s) 278, 626
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 3 cut(s) 406, 456, 483
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 212, 384, 403
HpyF3I CTNAG 3 cut(s) 22, 316, 542
HpySE526I ACGT 1 cut(s) 559
Hsp92II CATG 5 cut(s) 49, 187, 245, 295, 334
HspAI GCGC 2 cut(s) 116, 206
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 4 cut(s) 126, 474, 573, 628
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 86, 110, 152, 175, 277, 419, 538, 630
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 128, 476, 575, 630
MboI GATC 4 cut(s) 126, 474, 573, 628
MboII GAAGA 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 27, 50, 352, 370
MlyI GAGTC 2 cut(s) 116, 421
MmeI TCCRAC 1 cut(s) 629
MnlI CCTC 2 cut(s) 31, 433
MslI CAYNNNNRTG 3 cut(s) 44, 240, 335
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 164, 212, 384, 403
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 126, 474, 573, 628
NlaIII CATG 5 cut(s) 49, 187, 245, 295, 334
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 117
NspI RCATGY 1 cut(s) 334
PaeR7I CTCGAG 1 cut(s) 159
PagI TCATGA 1 cut(s) 241
PceI AGGCCT 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 565
PflMI CCANNNNNTGG 2 cut(s) 189, 297
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 2 cut(s) 116, 421
PpsI GAGTC 2 cut(s) 116, 421
PsiI TTATAA 2 cut(s) 270, 518
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 3 cut(s) 44, 240, 335
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 4 cut(s) 126, 474, 573, 628
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 116, 421
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 159
SmiMI CAYNNNNRTG 3 cut(s) 44, 240, 335
SmlI CTYRAG 2 cut(s) 159, 216
SmoI CTYRAG 2 cut(s) 159, 216
Sse9I AATT 4 cut(s) 27, 50, 352, 370
SseBI AGGCCT 1 cut(s) 513
SsiI CCGC 1 cut(s) 496
SspMI CTAG 1 cut(s) 203
StuI AGGCCT 1 cut(s) 513
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 278, 626
TaiI ACGT 1 cut(s) 562
TaqI TCGA 4 cut(s) 125, 160, 368, 425
TasI AATT 4 cut(s) 27, 50, 352, 370
TscAI CASTG 2 cut(s) 22, 631
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 4 cut(s) 54, 213, 230, 589
TspRI CASTG 2 cut(s) 22, 631
Van91I CCANNNNNTGG 2 cut(s) 189, 297
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 27, 370
XceI RCATGY 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 159
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.