RLG00000015802
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016859
Physical Location & Seq
Forward (+)
1531079 .. 1531513
435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015802

Sequence Viewer

Length: 411 bp
ATGGCCATGAAGGAAGGAAAATGCCGCCGTTTGGTGGCCGCACTTGACAAGGCGACCAATCGCCCCGCCTACAACGACGACGGGATCCTGGAAGGCTACAAAGAGATCGAAATCCTCCGAGCGCTTGCTGAGTGTCGTTTCGTGGTCAATCTAGTGGGCCACGAGGTGGATGATTTCGAAGCTCGCTCGAAGTGGCGTGATGCTCAGAAGGCCGCAACCGTTACTGTCGTCTACGAGCATTGTGATACTGATCTCAGCAGGTACCGGAGGGCTCTCCAAGACGAGCGTCTCCCAGCCCCGATGGTGAAGAGCTTGTTTTACCAGCTCTGCAGCGGCCTTCGTGCCGCCCACTCCAAAGGGATCTTTCTCCGAGACCTCCGCCCTGAGAAGATTAGAACCCTTTTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

137

Amino Acids

15.66

Weight (kDa)

8.7

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 33 - 131 5.8e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 249
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccB7I CCANNNNNTGG 1 cut(s) 166
AccI GTMKAC 1 cut(s) 231
AciI CCGC 7 cut(s) 25, 39, 66, 213, 333, 345, 379
AclWI GGATC 3 cut(s) 79, 92, 368
AcoI YGGCCR 2 cut(s) 3, 36
AdeI CACNNNGTG 1 cut(s) 166
AfaI GTAC 1 cut(s) 263
AfeI AGCGCT 1 cut(s) 123
AfiI CCNNNNNNNGG 3 cut(s) 31, 34, 166
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 3 cut(s) 182, 312, 325
AluI AGCT 3 cut(s) 182, 312, 325
Alw26I GTCTC 2 cut(s) 293, 366
AlwI GGATC 3 cut(s) 79, 92, 368
Aor51HI AGCGCT 1 cut(s) 123
AoxI GGCC 5 cut(s) 3, 36, 157, 210, 334
ApeKI GCWGC 1 cut(s) 330
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 177
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 274
BauI CACGAG 1 cut(s) 161
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 2 cut(s) 293, 366
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 328
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 249
BisI GCNGC 6 cut(s) 25, 39, 213, 331, 334, 345
BlsI GCNGC 6 cut(s) 26, 40, 214, 332, 335, 346
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 86, 263
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 190
BoxI GACNNNNGTC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 177
BsaBI GATNNNNATC 2 cut(s) 110, 249
BsaI GGTCTC 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 34, 166
Bse8I GATNNNNATC 2 cut(s) 110, 249
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 2 cut(s) 110, 249
BseLI CCNNNNNNNGG 3 cut(s) 31, 34, 166
BseMII CTCAG 4 cut(s) 120, 218, 268, 375
BseXI GCAGC 1 cut(s) 342
BseYI CCCAGC 1 cut(s) 292
BshFI GGCC 5 cut(s) 5, 38, 159, 212, 336
BshNI GGYRCC 1 cut(s) 261
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 31, 34, 166
BsmAI GTCTC 2 cut(s) 293, 366
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 5 cut(s) 5, 38, 159, 212, 336
Bso31I GGTCTC 1 cut(s) 366
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 4 cut(s) 84, 105, 250, 360
BspACI CCGC 7 cut(s) 25, 39, 66, 213, 333, 345, 379
BspANI GGCC 5 cut(s) 5, 38, 159, 212, 336
BspCNI CTCAG 4 cut(s) 121, 217, 267, 376
BspLI GGNNCC 2 cut(s) 86, 263
BspMAI CTGCAG 1 cut(s) 332
BspMI ACCTGC 1 cut(s) 249
BspPI GGATC 3 cut(s) 79, 92, 368
BspQI GCTCTTC 1 cut(s) 302
BspT104I TTCGAA 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 366
BssMI GATC 4 cut(s) 84, 105, 250, 360
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 220, 226
Bst6I CTCTTC 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 126, 184
BstDEI CTNAG 4 cut(s) 129, 204, 254, 384
BstF5I GGATG 1 cut(s) 175
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 4 cut(s) 87, 108, 253, 363
BstMAI GTCTC 2 cut(s) 293, 366
BstMBI GATC 4 cut(s) 84, 105, 250, 360
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 89
BstPAI GACNNNNGTC 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 84, 360
BstYI RGATCY 2 cut(s) 84, 360
BsuRI GGCC 5 cut(s) 5, 38, 159, 212, 336
BtsCI GGATG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 126, 184
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 7
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 4 cut(s) 129, 204, 254, 384
DpnI GATC 4 cut(s) 86, 107, 252, 362
DpnII GATC 4 cut(s) 84, 105, 250, 360
DraIII CACNNNGTG 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 3, 36
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 366
Eco47III AGCGCT 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 1 cut(s) 10
FaiI YATR 1 cut(s) 8
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 73
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 6 cut(s) 25, 39, 213, 331, 334, 345
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 6 cut(s) 25, 39, 213, 331, 334, 345
FspBI CTAG 1 cut(s) 152
GlaI GCGC 1 cut(s) 123
GluI GCNGC 6 cut(s) 25, 39, 213, 331, 334, 345
GsaI CCCAGC 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 5 cut(s) 5, 38, 159, 212, 336
HapII CCGG 1 cut(s) 265
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 124
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HpaII CCGG 1 cut(s) 265
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 119, 207, 371
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 5 cut(s) 4, 8, 86, 202, 347
HpyCH4III ACNGT 2 cut(s) 220, 226
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 4 cut(s) 129, 204, 254, 384
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 122
KpnI GGTACC 1 cut(s) 265
Kzo9I GATC 4 cut(s) 84, 105, 250, 360
LguI GCTCTTC 1 cut(s) 302
LpnPI CCDG 7 cut(s) 74, 101, 244, 278, 306, 335, 396
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 220
MalI GATC 4 cut(s) 86, 107, 252, 362
MboI GATC 4 cut(s) 84, 105, 250, 360
MboII GAAGA 2 cut(s) 319, 400
MflI RGATCY 2 cut(s) 84, 360
MhlI GDGCHC 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 125, 157, 261, 386
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 4 cut(s) 84, 105, 250, 360
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 86, 263
NspV TTCGAA 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 6 cut(s) 26, 40, 214, 332, 335, 346
PshAI GACNNNNGTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 86, 263
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 332
PsuI RGATCY 2 cut(s) 84, 360
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 302
SatI GCNGC 6 cut(s) 25, 39, 213, 331, 334, 345
Sau3AI GATC 4 cut(s) 84, 105, 250, 360
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 274
SetI ASST 6 cut(s) 168, 184, 263, 314, 327, 378
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 177
SsiI CCGC 7 cut(s) 25, 39, 66, 213, 333, 345, 379
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 220, 226
TaqI TCGA 4 cut(s) 108, 177, 188, 405
TauI GCSGC 5 cut(s) 27, 41, 215, 336, 347
TseI GCWGC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 23
Van91I CCANNNNNTGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.