Rh2BG023400

cyclin-dependent protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016859
Physical Location & Seq
Reverse (-)
1571106 .. 1571765
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG023400.1

Sequence Viewer

Length: 660 bp
ATGAAGAGGTACACGTTCGCCGAGGACCTGATGAGAACCGGGAAATGCCGCCGTTTGGTGGCCGCACTTGACAACACGACCAATCGCGCCGTCATCGTCGCCGCCTACAACGACGACGGGATCCTGGAAGGCTACAAAGAGATCGAAATCCTGCGAGCGCTTGCTGAGTGTCCTTTCGTGGTCAATCTAGTGGGCCACGAGGTGGATGATTTCGAAGCTCGCTCGACGTGGCGTGATCCTCAGAAGGCCTCAACCGTTTCCGTCGTGTACGAGCACTGTGATACTGATCTCAGCAGGTACCGGAAGGCTATCCAAGGCCATCATCTCCCCGCCCGGATGGTTAAGAGCTTGTTTTACCAGCTCTCCACGGGCCTTCATGCCGCCCACTCCAAAGGGATCTTTCTCCGAGACCTCCGGCCTGAGAAGATTCGGGTTTTGGACAACCCTTTTCGAGTGAAGCTCTCCGACTTCATTGGGACCAAGATGCTTCACCCAATGGCCCGCGATTCGGATTTTATCACACCTCCCGGCGCGTTGGAGCGCAACCTGAGCTATCAGGCCCCTGAGCAGCTAATTGGGTCAGAGATGTACACCTCTGCGGTGGACATGTGGGCACTGGCTTGCATTGTGGGTAAATCACTGATCTTTTCTCTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009934 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0022603 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044839 GO:0044843 GO:0046483 GO:0046777 GO:0048316 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04540 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04540 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

219

Amino Acids

24.79

Weight (kDa)

7.72

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 45 - 213 1.4e-18 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 285
Acc65I GGTACC 1 cut(s) 297
AccB1I GGYRCC 1 cut(s) 297
AccB7I CCANNNNNTGG 1 cut(s) 202
AccII CGCG 3 cut(s) 87, 504, 533
AciI CCGC 7 cut(s) 49, 63, 102, 330, 381, 502, 599
AclWI GGATC 4 cut(s) 115, 128, 230, 404
AcoI YGGCCR 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 4 cut(s) 11, 269, 299, 590
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 4 cut(s) 55, 58, 202, 508
AflIII ACRYGT 2 cut(s) 12, 606
AjiI CACGTC 1 cut(s) 228
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 6 cut(s) 218, 348, 361, 460, 552, 571
AluI AGCT 6 cut(s) 218, 348, 361, 460, 552, 571
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 4 cut(s) 115, 128, 230, 404
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 8 cut(s) 60, 193, 246, 316, 370, 416, 498, 558
ApeKI GCWGC 1 cut(s) 568
Asp718I GGTACC 1 cut(s) 297
AspLEI GCGC 4 cut(s) 89, 160, 533, 543
AspS9I GGNCC 6 cut(s) 25, 193, 370, 477, 499, 559
AsuC2I CCSGG 3 cut(s) 40, 334, 528
AsuHPI GGTGA 1 cut(s) 482
AsuII TTCGAA 1 cut(s) 213
AvaII GGWCC 2 cut(s) 25, 477
BaeGI GKGCMC 1 cut(s) 616
BamHI GGATCC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 297
BauI CACGAG 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 580
BccI CCATC 2 cut(s) 327, 331
BceAI ACGGC 2 cut(s) 36, 74
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 3 cut(s) 40, 334, 528
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 656
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 285
BisI GCNGC 5 cut(s) 49, 63, 102, 381, 569
BlsI GCNGC 5 cut(s) 50, 64, 103, 382, 570
Bme1390I CCNGG 4 cut(s) 40, 125, 334, 528
Bme18I GGWCC 2 cut(s) 25, 477
BmgBI CACGTC 1 cut(s) 228
BmgT120I GGNCC 6 cut(s) 25, 193, 370, 477, 499, 559
BmiI GGNNCC 4 cut(s) 122, 299, 478, 561
BmrFI CCNGG 4 cut(s) 40, 125, 334, 528
BmsI GCATC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 444, 476
Bpu10I CCTNAGC 2 cut(s) 548, 564
Bpu14I TTCGAA 1 cut(s) 213
BpuMI CCSGG 3 cut(s) 40, 334, 528
BsaBI GATNNNNATC 2 cut(s) 146, 285
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 21, 313, 366
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 58, 202, 508
Bse1I ACTGG 1 cut(s) 621
Bse8I GATNNNNATC 2 cut(s) 146, 285
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 3 cut(s) 21, 313, 366
BseGI GGATG 2 cut(s) 211, 342
BseJI GATNNNNATC 2 cut(s) 146, 285
BseLI CCNNNNNNNGG 4 cut(s) 55, 58, 202, 508
BseMII CTCAG 6 cut(s) 156, 254, 304, 411, 539, 555
BseNI ACTGG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 1 cut(s) 580
Bsh1236I CGCG 3 cut(s) 87, 504, 533
BshFI GGCC 8 cut(s) 62, 195, 248, 318, 372, 418, 500, 560
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 5 cut(s) 39, 301, 334, 415, 528
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 4 cut(s) 55, 58, 202, 508
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 8 cut(s) 62, 195, 248, 318, 372, 418, 500, 560
Bso31I GGTCTC 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 276, 616
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 6 cut(s) 120, 141, 235, 286, 396, 642
BspACI CCGC 7 cut(s) 49, 63, 102, 330, 381, 502, 599
BspANI GGCC 8 cut(s) 62, 195, 248, 318, 372, 418, 500, 560
BspCNI CTCAG 6 cut(s) 157, 253, 303, 412, 540, 556
BspFNI CGCG 3 cut(s) 87, 504, 533
BspLI GGNNCC 4 cut(s) 122, 299, 478, 561
BspMI ACCTGC 1 cut(s) 285
BspPI GGATC 4 cut(s) 115, 128, 230, 404
BspT104I TTCGAA 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 3 cut(s) 21, 313, 366
BssMI GATC 6 cut(s) 120, 141, 235, 286, 396, 642
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 256, 278
BstAUI TGTACA 1 cut(s) 588
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 5 cut(s) 156, 162, 220, 502, 622
BstDEI CTNAG 6 cut(s) 165, 240, 290, 420, 548, 564
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 211, 342
BstFNI CGCG 3 cut(s) 87, 504, 533
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 4 cut(s) 89, 160, 533, 543
BstKTI GATC 6 cut(s) 123, 144, 238, 289, 399, 645
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 6 cut(s) 120, 141, 235, 286, 396, 642
BstMWI GCNNNNNNNGC 1 cut(s) 549
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 4 cut(s) 38, 123, 332, 526
BstSFI CTRYAG 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 3 cut(s) 87, 504, 533
BstV1I GCAGC 1 cut(s) 580
BstX2I RGATCY 2 cut(s) 120, 396
BstYI RGATCY 2 cut(s) 120, 396
BsuRI GGCC 8 cut(s) 62, 195, 248, 318, 372, 418, 500, 560
BtgI CCRYGG 1 cut(s) 366
BtrI CACGTC 1 cut(s) 228
BtsCI GGATG 2 cut(s) 211, 342
BtsIMutI CAGTG 3 cut(s) 274, 614, 638
BveI ACCTGC 1 cut(s) 285
Cac8I GCNNGC 5 cut(s) 156, 162, 220, 502, 622
CfoI GCGC 4 cut(s) 89, 160, 533, 543
Cfr13I GGNCC 6 cut(s) 25, 193, 370, 477, 499, 559
Csp6I GTAC 4 cut(s) 10, 268, 298, 589
CviAII CATG 2 cut(s) 377, 607
CviQI GTAC 4 cut(s) 10, 268, 298, 589
DdeI CTNAG 6 cut(s) 165, 240, 290, 420, 548, 564
DpnI GATC 6 cut(s) 122, 143, 237, 288, 398, 644
DpnII GATC 6 cut(s) 120, 141, 235, 286, 396, 642
DraIII CACNNNGTG 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 313
Eco147I AGGCCT 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 25, 477
Eco47III AGCGCT 1 cut(s) 159
EcoO109I RGGNCCY 2 cut(s) 25, 559
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 380, 610
FaiI YATR 3 cut(s) 378, 608, 658
FaqI GGGAC 1 cut(s) 490
FatI CATG 2 cut(s) 376, 606
FauI CCCGC 2 cut(s) 337, 509
Fnu4HI GCNGC 5 cut(s) 49, 63, 102, 381, 569
FokI GGATG 2 cut(s) 218, 349
Fsp4HI GCNGC 5 cut(s) 49, 63, 102, 381, 569
FspBI CTAG 1 cut(s) 188
GlaI GCGC 4 cut(s) 88, 159, 532, 542
GluI GCNGC 5 cut(s) 49, 63, 102, 381, 569
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 8 cut(s) 62, 195, 248, 318, 372, 418, 500, 560
HapII CCGG 5 cut(s) 39, 301, 334, 415, 528
HhaI GCGC 4 cut(s) 89, 160, 533, 543
Hin1II CATG 2 cut(s) 380, 610
Hin6I GCGC 4 cut(s) 87, 158, 531, 541
HinP1I GCGC 4 cut(s) 87, 158, 531, 541
HinfI GANTC 2 cut(s) 427, 506
HpaII CCGG 5 cut(s) 39, 301, 334, 415, 528
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 4 cut(s) 12, 268, 591, 604
Hpy188I TCNGA 5 cut(s) 243, 407, 466, 511, 583
Hpy8I GTNNAC 4 cut(s) 12, 268, 591, 604
Hpy99I CGWCG 5 cut(s) 101, 116, 119, 229, 266
HpyAV CCTTC 4 cut(s) 122, 238, 298, 383
HpyCH4III ACNGT 2 cut(s) 256, 278
HpyCH4IV ACGT 2 cut(s) 14, 227
HpyCH4V TGCA 1 cut(s) 624
HpyF10VI GCNNNNNNNGC 1 cut(s) 549
HpyF3I CTNAG 6 cut(s) 165, 240, 290, 420, 548, 564
HpySE526I ACGT 2 cut(s) 14, 227
Hsp92II CATG 2 cut(s) 380, 610
HspAI GCGC 4 cut(s) 87, 158, 531, 541
KpnI GGTACC 1 cut(s) 301
Kzo9I GATC 6 cut(s) 120, 141, 235, 286, 396, 642
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 1 cut(s) 474
MaeI CTAG 1 cut(s) 188
MaeII ACGT 2 cut(s) 14, 227
MalI GATC 6 cut(s) 122, 143, 237, 288, 398, 644
MboI GATC 6 cut(s) 120, 141, 235, 286, 396, 642
MboII GAAGA 2 cut(s) 16, 436
MflI RGATCY 2 cut(s) 120, 396
MhlI GDGCHC 2 cut(s) 276, 616
MluCI AATT 1 cut(s) 573
MmeI TCCRAC 2 cut(s) 489, 516
MnlI CCTC 7 cut(s) 16, 193, 249, 259, 422, 534, 604
MseI TTAA 1 cut(s) 342
MspI CCGG 5 cut(s) 39, 301, 334, 415, 528
MspR9I CCNGG 4 cut(s) 40, 125, 334, 528
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 3 cut(s) 87, 504, 533
MwoI GCNNNNNNNGC 1 cut(s) 549
NciI CCSGG 3 cut(s) 40, 334, 528
NdeII GATC 6 cut(s) 120, 141, 235, 286, 396, 642
NlaIII CATG 2 cut(s) 380, 610
NlaIV GGNNCC 4 cut(s) 122, 299, 478, 561
NmeAIII GCCGAG 1 cut(s) 46
NspI RCATGY 1 cut(s) 610
NspV TTCGAA 1 cut(s) 213
PceI AGGCCT 1 cut(s) 248
PciI ACATGT 1 cut(s) 606
PfeI GAWTC 2 cut(s) 427, 506
PflMI CCANNNNNTGG 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 5 cut(s) 50, 64, 103, 382, 570
PpuMI RGGWCCY 1 cut(s) 25
PscI ACATGT 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 4 cut(s) 122, 299, 478, 561
PspPI GGNCC 6 cut(s) 25, 193, 370, 477, 499, 559
PspPPI RGGWCCY 1 cut(s) 25
PsuI RGATCY 2 cut(s) 120, 396
RsaI GTAC 4 cut(s) 11, 269, 299, 590
RsaNI GTAC 4 cut(s) 10, 268, 298, 589
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 5 cut(s) 49, 63, 102, 381, 569
Sau3AI GATC 6 cut(s) 120, 141, 235, 286, 396, 642
Sau96I GGNCC 6 cut(s) 25, 193, 370, 477, 499, 559
ScrFI CCNGG 4 cut(s) 40, 125, 334, 528
SduI GDGCHC 2 cut(s) 276, 616
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 1 cut(s) 656
SfuI TTCGAA 1 cut(s) 213
SinI GGWCC 2 cut(s) 25, 477
Sse9I AATT 1 cut(s) 573
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 7 cut(s) 49, 63, 102, 330, 381, 502, 599
SspMI CTAG 1 cut(s) 188
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 4 cut(s) 38, 123, 332, 526
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 2 cut(s) 256, 278
TaiI ACGT 2 cut(s) 17, 230
TaqI TCGA 4 cut(s) 144, 213, 224, 451
TasI AATT 1 cut(s) 573
TatI WGTACW 1 cut(s) 588
TauI GCSGC 4 cut(s) 51, 65, 104, 383
TfiI GAWTC 2 cut(s) 427, 506
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 3 cut(s) 281, 621, 645
TseI GCWGC 1 cut(s) 568
TspDTI ATGAA 3 cut(s) 17, 365, 460
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 3 cut(s) 281, 621, 645
Van91I CCANNNNNTGG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 25, 477
XceI RCATGY 1 cut(s) 610
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.