Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010698.1

Orthogroup ID

OG0016859

Physical Location & Seq

Genomic Coordinates Reverse (-)

45444 .. 45981

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010698.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgacaactggtgttgttctgttttcggccgattctacttctcatccacgtacccatctgcaatctatattcggactattgggtactccaacagtgaacccatatcctcttgatgtgaaggatcaatgggcagcccaaaagacatgtgagcctactcttgatctatatgatctactcttgccagtcttgggccagcgtggatctgagctcctgatgggactactgtgcatcgacccggcaaagaggattacagctgaaggggcattgaagcacacctacttcaaccgttatcgtctggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 ko04113 ko04360 ko05010 ko05030 map04011 map04111 map04113 map04360 map05010 map05030

Pfam Domains

Protein Families

Pkinase

Protein Analysis

100

Amino Acids

11.1

Weight (kDa)

6.81

Isoelectric Point (pI)

24.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25231 FvH4_6g35910 FvH4_6g35910 FvH4_6g35910
rosa_laevigata	RLG00000015802 RLG00000015803
rosa_multiflora	Rmu_sc0010698.1_g000010 Rmu_sc0010698.1_g000011
rosa_samantha	Rh2AG022800 Rh2AG024900 Rh2BG023200 Rh2BG023400 Rh2CG025400 Rh2DG025300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	129, 208
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	52, 85
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	268, 283
AluBI	AGCT	2 cut(s)	208, 254
AluI	AGCT	2 cut(s)	208, 254
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	129, 208
AoxI	GGCC	2 cut(s)	27, 190
ApeKI	GCWGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	63, 208
BcnI	CCSGG	1 cut(s)	236
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	13, 182
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	13, 182
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	29, 192
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	29, 192
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	121, 160, 169, 200
BspANI	GGCC	2 cut(s)	29, 192
BspCNI	CTCAG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	129, 208
BsrI	ACTGG	2 cut(s)	13, 182
BssMI	GATC	4 cut(s)	121, 160, 169, 200
Bst4CI	ACNGT	3 cut(s)	94, 225, 287
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	4 cut(s)	124, 163, 172, 203
BstMBI	GATC	4 cut(s)	121, 160, 169, 200
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	29, 192
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	51, 84
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	6 cut(s)	29, 134, 151, 192, 208, 254
CviKI_1	RGCY	6 cut(s)	29, 134, 151, 192, 208, 254
CviQI	GTAC	2 cut(s)	51, 84
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	123, 162, 171, 202
DpnII	GATC	4 cut(s)	121, 160, 169, 200
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	147
FaiI	YATR	5 cut(s)	68, 103, 145, 166, 168
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	29, 192
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	1 cut(s)	147
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	74, 205
Hpy188III	TCNNGA	3 cut(s)	110, 158, 211
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	112, 251
HpyCH4III	ACNGT	3 cut(s)	94, 225, 287
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	61, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	121, 160, 169, 200
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	195, 206, 224, 249, 281
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	1 cut(s)	49
MalI	GATC	4 cut(s)	123, 162, 171, 202
MboI	GATC	4 cut(s)	121, 160, 169, 200
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	2 cut(s)	117, 237
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	4 cut(s)	121, 160, 169, 200
NlaIII	CATG	1 cut(s)	147
NspI	RCATGY	1 cut(s)	147
PciI	ACATGT	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	50
PscI	ACATGT	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	52, 85
RsaNI	GTAC	2 cut(s)	51, 84
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	4 cut(s)	121, 160, 169, 200
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	52, 210, 256, 278
SfaNI	GCATC	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	3 cut(s)	94, 225, 287
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	32
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	1 cut(s)	131
TspRI	CASTG	1 cut(s)	99
XceI	RCATGY	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.