Rh2DG025300

cyclin-dependent protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016859
Physical Location & Seq
Reverse (-)
1510320 .. 1512273
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG025300.1

Sequence Viewer

Length: 936 bp
ATGAAGAGGTACACGTTCGCCGAGGAGCTCAGGGCCGGAAAATGCCGCCGTTTGGTGGCCGCACTTGACAAGACTACCGATCGGGCCGTCATCGTTGCCGCCTACAACGACGACGGGATCCTCGAAGGCTACAAAGAGATCCAAATCCTGCGAGCGCTTGCTGAGTGTCCTTTCGTGGTCAATCTAGTGGGGCACGAGGTGGATGATTTCGAAGCTCGCTCGACGTGGCGTGATCCTCAGAAGGCCTCAACCGTTTCCGTCGTGTACGAGCATTGCGATACTGACCTGACCATGTATAGGATGGCTTCTCCTCGCCGCCATCTCCCCGTCGAAAAGGTGAAGAGCTTGTTTTTTCAGCTCTCCACGGGCCTTCATGCCGCCCACTCCAAAGGGATCTTTCTCCGAGACCTCCGCCCAGAGAAGATTCGCGTTTTGGAGAACCCTTTTCGAGTGAAGCTCTCCGACTTCATTGGGGCCAAGATGCTTCACCCAATGGCCCCCGATTCGGATTTGGTCACACCTCCCGGCGCGTTGGAGCGCAACCTGAGCTATCAGGCCCCTGAGCAGCTACTTGGGTCAGAGATGTACACCTCTGCCGTGGACATGTGGGCACTGGCTTGCATTGTAGTTGAGATGACAACTGGTGTTGTTCTGTTTTCGGCCGATTCTACTTCTCATCCACGTACCCATCTGCAATCTATATTCGGACTATTGGGCACTCCAACAGTGAACCCATATCCTCTTGATGTGAAGGATCAATGGGCAGCCCAAAAGACATGTGAGCCTACTCTTTATCTATATGATCTACTCTTGCCAGTCTTGGGCCACAATGGATCTGAGCTCCTGATGGGACTACTGTGCATCGACCCGGCAAAGAGGATTACAGCTGAAGAGGCATTGAAGCACACCTACTTCAACGGTTATAATCTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009934 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0022603 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044839 GO:0044843 GO:0046483 GO:0046777 GO:0048316 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04540 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04540 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

311

Amino Acids

34.87

Weight (kDa)

6.07

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 22 - 305 7.9e-31 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 42 - 214 1.1e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
AccII CGCG 2 cut(s) 429, 530
AciI CCGC 6 cut(s) 46, 60, 99, 316, 378, 412
AclWI GGATC 7 cut(s) 112, 125, 133, 227, 401, 762, 841
AcoI YGGCCR 2 cut(s) 57, 660
AcuI CTGAAG 1 cut(s) 909
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 4 cut(s) 11, 266, 587, 685
AfeI AGCGCT 1 cut(s) 156
AfiI CCNNNNNNNGG 5 cut(s) 52, 55, 297, 505, 821
AflIII ACRYGT 3 cut(s) 12, 603, 776
AgsI TTSAA 2 cut(s) 901, 916
AjiI CACGTC 1 cut(s) 225
AluBI AGCT 9 cut(s) 28, 215, 345, 358, 457, 549, 568, 841, 887
AluI AGCT 9 cut(s) 28, 215, 345, 358, 457, 549, 568, 841, 887
Alw21I GWGCWC 2 cut(s) 30, 843
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 7 cut(s) 112, 125, 133, 227, 401, 762, 841
Aor51HI AGCGCT 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 565, 764
AspLEI GCGC 3 cut(s) 157, 530, 540
AspS9I GGNCC 7 cut(s) 33, 84, 367, 474, 496, 556, 823
AsuC2I CCSGG 2 cut(s) 525, 869
AsuHPI GGTGA 2 cut(s) 349, 479
AsuII TTCGAA 1 cut(s) 210
BaeGI GKGCMC 3 cut(s) 195, 613, 719
BamHI GGATCC 1 cut(s) 117
BanII GRGCYC 2 cut(s) 30, 843
BarI GAAGNNNNNNTAC 2 cut(s) 893, 925
BauI CACGAG 1 cut(s) 194
Bbv12I GWGCWC 2 cut(s) 30, 843
BbvI GCAGC 2 cut(s) 577, 776
BccI CCATC 4 cut(s) 295, 327, 696, 841
BceAI ACGGC 3 cut(s) 33, 71, 581
BcnI CCSGG 2 cut(s) 525, 869
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 158
BisI GCNGC 7 cut(s) 46, 60, 99, 316, 378, 566, 765
BlsI GCNGC 7 cut(s) 47, 61, 100, 317, 379, 567, 766
Bme1390I CCNGG 2 cut(s) 525, 869
BmgBI CACGTC 1 cut(s) 225
BmgT120I GGNCC 7 cut(s) 33, 84, 367, 474, 496, 556, 823
BmiI GGNNCC 4 cut(s) 119, 475, 498, 558
BmrFI CCNGG 2 cut(s) 525, 869
BmsI GCATC 2 cut(s) 471, 870
BplI GAGNNNNNCTC 2 cut(s) 441, 473
Bpu10I CCTNAGC 3 cut(s) 29, 545, 561
Bpu14I TTCGAA 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 525, 869
BsaAI YACGTR 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 399
BsaJI CCNNGG 3 cut(s) 21, 363, 597
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 55, 297, 505, 821
Bse1I ACTGG 3 cut(s) 618, 646, 815
Bse3DI GCAATG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 21, 363, 597
BseGI GGATG 3 cut(s) 208, 306, 676
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 5 cut(s) 52, 55, 297, 505, 821
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 6 cut(s) 43, 153, 251, 536, 552, 828
BseNI ACTGG 3 cut(s) 618, 646, 815
BseRI GAGGAG 2 cut(s) 38, 300
BseSI GKGCMC 3 cut(s) 195, 613, 719
BseX3I CGGCCG 1 cut(s) 660
BseXI GCAGC 2 cut(s) 577, 776
Bsh1236I CGCG 2 cut(s) 429, 530
Bsh1285I CGRYCG 2 cut(s) 82, 663
BsiEI CGRYCG 2 cut(s) 82, 663
BsiHKAI GWGCWC 2 cut(s) 30, 843
BsiSI CCGG 3 cut(s) 36, 525, 869
BslFI GGGAC 1 cut(s) 864
BslI CCNNNNNNNGG 5 cut(s) 52, 55, 297, 505, 821
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 864
Bso31I GGTCTC 1 cut(s) 399
Bsp119I TTCGAA 1 cut(s) 210
Bsp1286I GDGCHC 5 cut(s) 30, 195, 613, 719, 843
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 8 cut(s) 79, 117, 138, 232, 393, 754, 802, 833
BspACI CCGC 6 cut(s) 46, 60, 99, 316, 378, 412
BspCNI CTCAG 6 cut(s) 42, 154, 250, 537, 553, 829
BspFNI CGCG 2 cut(s) 429, 530
BspLI GGNNCC 4 cut(s) 119, 475, 498, 558
BspPI GGATC 7 cut(s) 112, 125, 133, 227, 401, 762, 841
BspQI GCTCTTC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 3 cut(s) 618, 646, 815
BssECI CCNNGG 3 cut(s) 21, 363, 597
BssMI GATC 8 cut(s) 79, 117, 138, 232, 393, 754, 802, 833
BssSI CACGAG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 194
Bst4CI ACNGT 4 cut(s) 253, 727, 858, 920
Bst6I CTCTTC 2 cut(s) 335, 885
BstAUI TGTACA 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 683
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 4 cut(s) 153, 159, 217, 619
BstDEI CTNAG 6 cut(s) 29, 162, 237, 545, 561, 837
BstDSI CCRYGG 2 cut(s) 363, 597
BstF5I GGATG 3 cut(s) 208, 306, 676
BstFNI CGCG 2 cut(s) 429, 530
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 3 cut(s) 157, 530, 540
BstKTI GATC 8 cut(s) 82, 120, 141, 235, 396, 757, 805, 836
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 8 cut(s) 79, 117, 138, 232, 393, 754, 802, 833
BstMCI CGRYCG 2 cut(s) 82, 663
BstMWI GCNNNNNNNGC 2 cut(s) 546, 893
BstNSI RCATGY 2 cut(s) 607, 780
BstSCI CCNGG 2 cut(s) 523, 867
BstSLI GKGCMC 3 cut(s) 195, 613, 719
BstUI CGCG 2 cut(s) 429, 530
BstV1I GCAGC 2 cut(s) 577, 776
BstX2I RGATCY 4 cut(s) 117, 138, 393, 833
BstYI RGATCY 4 cut(s) 117, 138, 393, 833
BstZI CGGCCG 1 cut(s) 660
BtgI CCRYGG 2 cut(s) 363, 597
BtrI CACGTC 1 cut(s) 225
BtsCI GGATG 3 cut(s) 208, 306, 676
BtsIMutI CAGTG 2 cut(s) 611, 732
Cac8I GCNNGC 4 cut(s) 153, 159, 217, 619
CfoI GCGC 3 cut(s) 157, 530, 540
Cfr13I GGNCC 7 cut(s) 33, 84, 367, 474, 496, 556, 823
Csp6I GTAC 4 cut(s) 10, 265, 586, 684
CviAII CATG 4 cut(s) 292, 374, 604, 777
CviQI GTAC 4 cut(s) 10, 265, 586, 684
DdeI CTNAG 6 cut(s) 29, 162, 237, 545, 561, 837
DpnI GATC 8 cut(s) 81, 119, 140, 234, 395, 756, 804, 835
DpnII GATC 8 cut(s) 79, 117, 138, 232, 393, 754, 802, 833
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 2 cut(s) 57, 660
EagI CGGCCG 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 335, 885
EarI CTCTTC 2 cut(s) 335, 885
EciI GGCGGA 1 cut(s) 401
Ecl136II GAGCTC 2 cut(s) 28, 841
EclXI CGGCCG 1 cut(s) 660
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 30, 843
Eco31I GGTCTC 1 cut(s) 399
Eco47III AGCGCT 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 660
Eco53kI GAGCTC 2 cut(s) 28, 841
Eco57I CTGAAG 1 cut(s) 909
EcoICRI GAGCTC 2 cut(s) 28, 841
EcoO109I RGGNCCY 1 cut(s) 556
EcoT38I GRGCYC 2 cut(s) 30, 843
FaeI CATG 4 cut(s) 295, 377, 607, 780
FaqI GGGAC 1 cut(s) 864
FatI CATG 4 cut(s) 291, 373, 603, 776
Fnu4HI GCNGC 7 cut(s) 46, 60, 99, 316, 378, 566, 765
FokI GGATG 3 cut(s) 215, 313, 663
FriOI GRGCYC 2 cut(s) 30, 843
Fsp4HI GCNGC 7 cut(s) 46, 60, 99, 316, 378, 566, 765
FspBI CTAG 1 cut(s) 185
GlaI GCGC 3 cut(s) 156, 529, 539
GluI GCNGC 7 cut(s) 46, 60, 99, 316, 378, 566, 765
HaeII RGCGCY 1 cut(s) 158
HapII CCGG 3 cut(s) 36, 525, 869
HhaI GCGC 3 cut(s) 157, 530, 540
Hin1II CATG 4 cut(s) 295, 377, 607, 780
Hin6I GCGC 3 cut(s) 155, 528, 538
HinP1I GCGC 3 cut(s) 155, 528, 538
HinfI GANTC 3 cut(s) 424, 503, 665
HpaII CCGG 3 cut(s) 36, 525, 869
HphI GGTGA 2 cut(s) 349, 479
Hpy166II GTNNAC 5 cut(s) 12, 265, 588, 601, 730
Hpy188I TCNGA 7 cut(s) 240, 404, 463, 508, 580, 707, 838
Hpy188III TCNNGA 2 cut(s) 743, 844
Hpy8I GTNNAC 5 cut(s) 12, 265, 588, 601, 730
Hpy99I CGWCG 5 cut(s) 113, 116, 226, 263, 332
HpyAV CCTTC 4 cut(s) 119, 235, 380, 745
HpyCH4III ACNGT 4 cut(s) 253, 727, 858, 920
HpyCH4IV ACGT 3 cut(s) 14, 224, 682
HpyCH4V TGCA 3 cut(s) 621, 694, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 546, 893
HpyF3I CTNAG 6 cut(s) 29, 162, 237, 545, 561, 837
HpySE526I ACGT 3 cut(s) 14, 224, 682
Hsp92II CATG 4 cut(s) 295, 377, 607, 780
HspAI GCGC 3 cut(s) 155, 528, 538
Kzo9I GATC 8 cut(s) 79, 117, 138, 232, 393, 754, 802, 833
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 3 cut(s) 25, 535, 846
Lsp1109I GCAGC 2 cut(s) 577, 776
LweI GCATC 2 cut(s) 471, 870
MaeI CTAG 1 cut(s) 185
MaeII ACGT 3 cut(s) 14, 224, 682
MaeIII GTNAC 1 cut(s) 514
MalI GATC 8 cut(s) 81, 119, 140, 234, 395, 756, 804, 835
MboI GATC 8 cut(s) 79, 117, 138, 232, 393, 754, 802, 833
MboII GAAGA 4 cut(s) 16, 352, 433, 902
MflI RGATCY 4 cut(s) 117, 138, 393, 833
MhlI GDGCHC 5 cut(s) 30, 195, 613, 719, 843
MmeI TCCRAC 3 cut(s) 486, 513, 746
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 3 cut(s) 36, 525, 869
MspR9I CCNGG 2 cut(s) 525, 869
MvnI CGCG 2 cut(s) 429, 530
MwoI GCNNNNNNNGC 2 cut(s) 546, 893
NciI CCSGG 2 cut(s) 525, 869
NdeII GATC 8 cut(s) 79, 117, 138, 232, 393, 754, 802, 833
NlaIII CATG 4 cut(s) 295, 377, 607, 780
NlaIV GGNNCC 4 cut(s) 119, 475, 498, 558
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 2 cut(s) 607, 780
NspV TTCGAA 1 cut(s) 210
PceI AGGCCT 1 cut(s) 245
PciI ACATGT 2 cut(s) 603, 776
PciSI GCTCTTC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 273
PfeI GAWTC 3 cut(s) 424, 503, 665
PkrI GCNGC 7 cut(s) 47, 61, 100, 317, 379, 567, 766
Ple19I CGATCG 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 683
PscI ACATGT 2 cut(s) 603, 776
PsiI TTATAA 1 cut(s) 924
Psp124BI GAGCTC 2 cut(s) 30, 843
PspN4I GGNNCC 4 cut(s) 119, 475, 498, 558
PspPI GGNCC 7 cut(s) 33, 84, 367, 474, 496, 556, 823
PsuI RGATCY 4 cut(s) 117, 138, 393, 833
PvuI CGATCG 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 4 cut(s) 11, 266, 587, 685
RsaNI GTAC 4 cut(s) 10, 265, 586, 684
SacI GAGCTC 2 cut(s) 30, 843
SapI GCTCTTC 1 cut(s) 335
SatI GCNGC 7 cut(s) 46, 60, 99, 316, 378, 566, 765
Sau3AI GATC 8 cut(s) 79, 117, 138, 232, 393, 754, 802, 833
Sau96I GGNCC 7 cut(s) 33, 84, 367, 474, 496, 556, 823
ScrFI CCNGG 2 cut(s) 525, 869
SduI GDGCHC 5 cut(s) 30, 195, 613, 719, 843
SfaNI GCATC 2 cut(s) 471, 870
SfuI TTCGAA 1 cut(s) 210
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 6 cut(s) 46, 60, 99, 316, 378, 412
SspMI CTAG 1 cut(s) 185
SstI GAGCTC 2 cut(s) 30, 843
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 523, 867
TaaI ACNGT 4 cut(s) 253, 727, 858, 920
TaiI ACGT 3 cut(s) 17, 227, 685
TaqI TCGA 6 cut(s) 123, 210, 221, 330, 448, 864
TatI WGTACW 1 cut(s) 585
TauI GCSGC 5 cut(s) 48, 62, 101, 318, 380
TfiI GAWTC 3 cut(s) 424, 503, 665
TscAI CASTG 2 cut(s) 618, 732
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 2 cut(s) 565, 764
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 3 cut(s) 17, 362, 457
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 2 cut(s) 618, 732
XceI RCATGY 2 cut(s) 607, 780
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.