RLG00000016532

Tubulin--tyrosine ligase-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
7371291 .. 7376914
5624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016532

Sequence Viewer

Length: 3039 bp
ATGTCAGCACCGGCAAAAAGAATTGAAACCTACGAAGACTTCGTCAAAGTTCACGGCTTGCTTCTGGCAGCCTCGGGATTGCCCCAGTCCCTGCACCGCCAGCTCTTCCAGAAGCTTCTCTCCGACACCTTCGACGGCGGGTCCCACTTCCAAATCGAGCCCACCTCCGACGGCCGTCAGCGTCGCCTTATCCTCACCTCCGACTCCATGCCCCAAAACTCCGACGTCTTCCTTGTTGACCACGCCTGGACCTTCCGCCTCTCCGAAGCTTTCAAACAGTTAAGGGAAGTTCCGGGATTGGCTGAGAGAATGGCGAGCATAATGTGTGTGGATATTGATTTGAATTCAGAAGAGAACCAAGTTCTGAGTGAGGGTGATGCAAAACGCAGCGTTTTGGAGGTACTGGAAAGTGAGATTAGTGAAGCCAATGGGAATGTTAACTGGTTGGAGCTTGAAGAACTTGGCATTGACAATGAAACGCTGTCGTCTTTGGACTTGTCTGCTAAGTTCCCTGGTTTGATTGCATTGTCCTTGTGTGGGAATAAGATTGACAATGTGGAGGTAGTTGTTGCGGAAGTTAGCAAATTGAAAAACCTAAGAGCGCTTTGGCTGAACAACAACCCGGTTGTAGAAAATCGTGGCAATGAATTAGGGGATAGGATTCTTCAAGAATTGCCGAATCTTGAAATCTATAACTCAAAGTTTACCGCCAATTTTGGTGAGTGGGCACTGGGGTTTTGTGGAGGAGTGTTTGACAAGGAAAATCCGGGCAGCATTGATCTGCCTGACCGTCCATTGCAGCAAGTCACGGATCTTGATCTTTCAGATAGATGTATTCAGAACTTAATCAATAAGGCATTTACCCCTTTTCAGTTGCCATGTCTTTCATACTTGAATCTTCGGGGAAATCCTTTAGAAGAGACCTCACTGGCCGACTTGTTATATGTACTACGGAATTTTCCTTCATTACAGTCTCTGGAGGTGGATATTCCTGGCCCTCTTGGAGAAAGTGCTCTAGAAATTCTTGAATCTCTTCCTAATCTCTCTGTACTGAATCGTGTCAATACATCAAAGATATTTGAAACTGAAAAGCATGTGGTTGATTCAGCGCTTCAGCCACGTCTTCCTGAGTGGACTCCTGATGAGCCTCTTGCTGATCGTGTTATAAATGCAATGTGGCAATATTTAATGACATATAGACTTGCGGACGAAGAGAAGATAGACGAGACCTCTGTGTTGTATGTGATGGATGAGCTAGGTTCAGCTTTGAGGCATAGTGATGAGCCAAATTTCAGAGTATCTCCTTTTCTGTTTATGCCAGAGGGGACATTAGCATCAGCTGTGAGTTTCTGCATATTATGGCCAATCAAGAATGTTGAAAAAGGTTATGAATGCACTCGTGATTATCTTTTTGGTATTGGGGAGGACAAGCAACGTTCTGCCAGACTTACAGCTTGGTTCCATACACCAGAGAAGTATTTTATTCGAGAGTATGAGAAGCACTGGCAGAACTTGCGAGCAAAAAGTTTAACTTCTCCTCCGATGGAGTCATGTCCAACTAAAAGTTTAAATCACAATGAAAAACGCACTTTTCGTGTGTACTCCGATATACCTCAAGTTGAAGAACTTTTGACACGTCCAGAGTTTGTACTCACACCTGATCCAAAGGATGCAGAAATTATATGGACAGGTGACCAAGTGGATGAGGATATGAAGAAAGCTTGGGGAATAACAGACAATCAGTTCATAAACCAGTTTCCTTTTGAGGCTTGTATCGTCATGAAACATCATTTGGCAGATACTGTTCAGAAGGCACTTGGATCTCCTGAGTGGATGCAGCCAACCTATAATCTGGAAACACATCTATCCCAACTTATTGGTGACTATTGTGTACGTAAAAGAGATGGGCTTAACAATCTGTGGATCTTAAAACCTTGGAACATGGCACGAACTATAGATACAACTGTCACTGATAATTTATCAGCTATTATTCGGCTCATGGAGACTGGACCGAAGATATGTCAGAAGTATATTGAGCACCCAGCCTTGTTCAAAGGGAGAAAGTTTGATATCCGCTACATAGTTTTACTACGGAGTTTGAACCCTATGGAAATATTTCTGTCAGACACTTTCTGGGTTAGACTGGCAAACAACCAATATTCTTTAGAAAAGCACAGTTTTTTTGAGTATGAGACTCACTTTACTGTTATGAACTATCGAGGGACACTGAATCACATGAACACGTCGGAATTTGTAAGAGAGTTTGAACAGGAGCACCAAGTTAAATGGTTGGATATTCACTCTAGAGTCAAAAAAATGATCCGATCGGTCTTTGAGGCAGCTGCAAAAGTGCACCCTGAGATGCACAGTCCAACGTCGAGGGCTATGTATGGTGTGGATGTCATGCTTGATAGTTCTTTCCAGCCAAAGTTACTGGAGGTTACTTACTGTCCTGACTGTACAAGAGCATGCAAGTATGATATGGAGGCAATAGTTGCAGGAGGGGAAGTGGTTAGAGCTCGTGAATTTTATAACTATGTCTTTGGTTGTCTCTTTTTGAATGAAGCCACTCATAGGTTCTGTACTGTGCTCGGCGACTACGACGGTGGGAGATCAGATCTAGGAATGAGTGATAGTAATAATTTCAGAGATCAGAGCTTTGTTTCCGATGATTCAAAATCCTCTTTGACGAGGACTTCCACCACCAATATCGCCTCTTCCTCGGCCTCACCTACATCCCCTGACAACGACAAGGCCCTCGGCTTCTTCATCCCTGATCGAAAATCCCAACCGGAAAGTCTCTCCGGCTCTTCGAGATGGCCTATAGGTCAGACGGTGACTACGACTAACTCTTTAAGTTCGTCTTCCTCGGTGATTCCGGCGACGGCAAATCCAACCTCTTGTCCAGGTTCATTTCGCAACAAGTTCAACCTCGAGTCTATATCCACCATCGGCGTCGAGTTCGCCACTCGGAGCATCCATGTCGATGATAAGATCGTCAAGGCCCAAATTTGGGACACCACCGGCCAAGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1013

Amino Acids

114.88

Weight (kDa)

5.1

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET_TTL PF25556 62 - 120 3.9e-12 Tubulin tyrosine ligase SET-like domain
SET_TTL PF25556 379 - 488 1.3e-22 Tubulin tyrosine ligase SET-like domain
TTL PF03133 580 - 830 2.3e-51 Tubulin-tyrosine ligase family
Ras PF00071 973 - 1012 1.2e-08 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77550
fragaria_vesca FvH4_1g08650 FvH4_1g08650
malus_domestica MD15G1217600.v1.1
prunus_persica Prupe.7G198800_v2.0.a1
pyrus_communis pycom15g19320
rosa_chinensis RchiOBHm_Chr2g0094931
rosa_laevigata RLG00000016532
rosa_multiflora Rmu_sc0004316.1_g000014
rosa_roxburghii Rroxscaffold_2G00146760
rosa_rugosa Rorug02G0048900
rosa_samantha Rh2AG095700 Rh2CG098600 Rh2DG095300
rosa_wichuraiana Rw2G007200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1166, 2532
AatII GACGTC 1 cut(s) 228
AciI CCGC 7 cut(s) 97, 138, 256, 572, 708, 1205, 2074
AclI AACGTT 1 cut(s) 1435
AclWI GGATC 5 cut(s) 819, 1655, 1828, 1931, 2314
AcoI YGGCCR 4 cut(s) 172, 930, 1361, 3025
AcsI RAATTY 7 cut(s) 343, 955, 1020, 1288, 2249, 2525, 3009
AcuI CTGAAG 1 cut(s) 1097
AcyI GRCGYC 2 cut(s) 225, 2955
AfaI GTAC 8 cut(s) 402, 948, 1050, 1601, 1650, 1893, 2461, 2584
AfeI AGCGCT 2 cut(s) 603, 1110
AfiI CCNNNNNNNGG 4 cut(s) 537, 2574, 3012, 3013
AflIII ACRYGT 2 cut(s) 1634, 2241
AhdI GACNNNNNGTC 1 cut(s) 139
AjiI CACGTC 3 cut(s) 1121, 1637, 2244
AjnI CCWGG 4 cut(s) 245, 511, 991, 2905
AjuI GAANNNNNNNTTGG 2 cut(s) 1775, 1807
Alw21I GWGCWC 6 cut(s) 1015, 2040, 2277, 2355, 2521, 2592
Alw26I GTCTC 7 cut(s) 914, 978, 1220, 1997, 2186, 2555, 2804
Alw44I GTGCAC 1 cut(s) 2351
AlwI GGATC 5 cut(s) 819, 1655, 1828, 1931, 2314
AlwNI CAGNNNCTG 3 cut(s) 91, 976, 1802
Ama87I CYCGRG 2 cut(s) 73, 2933
Aor51HI AGCGCT 2 cut(s) 603, 1110
AoxI GGCC 9 cut(s) 172, 930, 994, 1361, 2724, 2754, 2819, 3003, 3025
ApaLI GTGCAC 1 cut(s) 2351
ApeKI GCWGC 7 cut(s) 68, 387, 771, 799, 1837, 2339, 2342
ApoI RAATTY 7 cut(s) 343, 955, 1020, 1288, 2249, 2525, 3009
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
Asp700I GAANNNNTTC 2 cut(s) 1032, 2115
AspLEI GCGC 2 cut(s) 604, 1111
AspS9I GGNCC 6 cut(s) 141, 249, 995, 2009, 2755, 3004
AsuC2I CCSGG 3 cut(s) 294, 623, 768
AsuHPI GGTGA 8 cut(s) 187, 386, 731, 1703, 1892, 2721, 2848, 2884
AvaI CYCGRG 2 cut(s) 73, 2933
AvaII GGWCC 3 cut(s) 141, 249, 2009
BaeGI GKGCMC 2 cut(s) 730, 2355
BaeI ACNNNNGTAYC 2 cut(s) 1950, 1983
BalI TGGCCA 1 cut(s) 1363
BanII GRGCYC 2 cut(s) 162, 2521
BauI CACGAG 2 cut(s) 1398, 2520
BbsI GAAGAC 4 cut(s) 42, 220, 1115, 2856
Bbv12I GWGCWC 6 cut(s) 1015, 2040, 2277, 2355, 2521, 2592
BbvI GCAGC 7 cut(s) 80, 399, 783, 811, 1849, 2329, 2351
BccI CCATC 5 cut(s) 1240, 1537, 1898, 2811, 2957
BceAI ACGGC 5 cut(s) 70, 151, 159, 187, 2901
BcgI CGANNNNNNTGC 2 cut(s) 2965, 2999
BciT130I CCWGG 4 cut(s) 247, 513, 993, 2907
BcnI CCSGG 3 cut(s) 294, 623, 768
BcoDI GTCTC 7 cut(s) 914, 978, 1220, 1997, 2186, 2555, 2804
BfaI CTAG 4 cut(s) 1016, 1256, 2304, 2621
BfmI CTRYAG 2 cut(s) 1953, 2823
BfoI RGCGCY 2 cut(s) 605, 1112
BglII AGATCT 1 cut(s) 2617
BisI GCNGC 7 cut(s) 69, 388, 772, 800, 1838, 2340, 2343
BlsI GCNGC 7 cut(s) 70, 389, 773, 801, 1839, 2341, 2344
Bme1390I CCNGG 7 cut(s) 247, 294, 513, 623, 768, 993, 2907
Bme18I GGWCC 3 cut(s) 141, 249, 2009
BmeRI GACNNNNNGTC 1 cut(s) 139
BmeT110I CYCGRG 2 cut(s) 73, 2933
BmgBI CACGTC 3 cut(s) 1121, 1637, 2244
BmgT120I GGNCC 6 cut(s) 141, 249, 995, 2009, 2755, 3004
BmiI GGNNCC 3 cut(s) 142, 143, 1460
BmrFI CCNGG 7 cut(s) 247, 294, 513, 623, 768, 993, 2907
BmrI ACTGGG 2 cut(s) 79, 740
BmsI GCATC 6 cut(s) 367, 1343, 1660, 1824, 2352, 2985
BmuI ACTGGG 2 cut(s) 79, 740
BoxI GACNNNNGTC 1 cut(s) 174
BpiI GAAGAC 4 cut(s) 42, 220, 1115, 2856
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpmI CTGGAG 2 cut(s) 998, 2456
BpuEI CTTGAG 1 cut(s) 1599
BpuMI CCSGG 3 cut(s) 294, 623, 768
BsaAI YACGTR 1 cut(s) 1895
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 2 cut(s) 225, 2955
BsaI GGTCTC 2 cut(s) 914, 1220
BsaJI CCNNGG 6 cut(s) 72, 511, 1934, 2721, 2758, 2868
BsaWI WCCGGW 1 cut(s) 2791
BsaXI ACNNNNNCTCC 4 cut(s) 1522, 1552, 2493, 2523
Bsc4I CCNNNNNNNGG 4 cut(s) 537, 2574, 3012, 3013
Bse118I RCCGGY 2 cut(s) 10, 3023
Bse3DI GCAATG 3 cut(s) 649, 794, 1179
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 4 cut(s) 247, 513, 993, 2907
BseDI CCNNGG 6 cut(s) 72, 511, 1934, 2721, 2758, 2868
BseGI GGATG 8 cut(s) 1255, 1675, 1708, 1839, 2404, 2735, 2769, 2976
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 4 cut(s) 537, 2574, 3012, 3013
BseMI GCAATG 3 cut(s) 649, 794, 1179
BseMII CTCAG 5 cut(s) 294, 356, 1119, 1818, 2349
BseRI GAGGAG 2 cut(s) 759, 1527
BseSI GKGCMC 2 cut(s) 730, 2355
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 7 cut(s) 80, 399, 783, 811, 1849, 2329, 2351
BseYI CCCAGC 1 cut(s) 2041
BsgI GTGCAG 1 cut(s) 77
Bsh1285I CGRYCG 2 cut(s) 175, 2327
BshFI GGCC 9 cut(s) 174, 932, 996, 1363, 2726, 2756, 2821, 3005, 3027
BsiEI CGRYCG 2 cut(s) 175, 2327
BsiHKAI GWGCWC 6 cut(s) 1015, 2040, 2277, 2355, 2521, 2592
BsiHKCI CYCGRG 2 cut(s) 73, 2933
BsiSI CCGG 8 cut(s) 11, 293, 623, 767, 2792, 2805, 2879, 3024
BslFI GGGAC 5 cut(s) 73, 127, 1339, 2236, 3029
BslI CCNNNNNNNGG 4 cut(s) 537, 2574, 3012, 3013
BsmAI GTCTC 7 cut(s) 914, 978, 1220, 1997, 2186, 2555, 2804
BsmFI GGGAC 5 cut(s) 73, 127, 1339, 2236, 3029
BsmI GAATGC 1 cut(s) 1397
BsnI GGCC 9 cut(s) 174, 932, 996, 1363, 2726, 2756, 2821, 3005, 3027
Bso31I GGTCTC 2 cut(s) 914, 1220
BsoBI CYCGRG 2 cut(s) 73, 2933
Bsp1286I GDGCHC 8 cut(s) 162, 730, 1015, 2040, 2277, 2355, 2521, 2592
Bsp1407I TGTACA 1 cut(s) 2459
BspACI CCGC 7 cut(s) 97, 138, 256, 572, 708, 1205, 2074
BspANI GGCC 9 cut(s) 174, 932, 996, 1363, 2726, 2756, 2821, 3005, 3027
BspCNI CTCAG 5 cut(s) 295, 357, 1120, 1819, 2350
BspHI TCATGA 1 cut(s) 1779
BspLI GGNNCC 3 cut(s) 142, 143, 1460
BspPI GGATC 5 cut(s) 819, 1655, 1828, 1931, 2314
BspQI GCTCTTC 2 cut(s) 110, 2815
BspTNI GGTCTC 2 cut(s) 914, 1220
BsrDI GCAATG 3 cut(s) 649, 794, 1179
BsrFI RCCGGY 2 cut(s) 10, 3023
BsrGI TGTACA 1 cut(s) 2459
BssAI RCCGGY 2 cut(s) 10, 3023
BssECI CCNNGG 6 cut(s) 72, 511, 1934, 2721, 2758, 2868
BssNI GRCGYC 2 cut(s) 225, 2955
BssSI CACGAG 2 cut(s) 1398, 2520
BssT1I CCWWGG 1 cut(s) 1934
Bst2BI CACGAG 2 cut(s) 1398, 2520
Bst2UI CCWGG 4 cut(s) 247, 513, 993, 2907
Bst6I CTCTTC 7 cut(s) 110, 345, 912, 1038, 1206, 2722, 2815
BstACI GRCGYC 2 cut(s) 225, 2955
BstAPI GCANNNNNTGC 2 cut(s) 1513, 2495
BstAUI TGTACA 1 cut(s) 2459
BstBAI YACGTR 1 cut(s) 1895
BstC8I GCNNGC 5 cut(s) 59, 101, 316, 1518, 2470
BstDEI CTNAG 7 cut(s) 303, 365, 504, 596, 1128, 1827, 2358
BstEII GGTNACC 1 cut(s) 1691
BstF5I GGATG 8 cut(s) 1255, 1675, 1708, 1839, 2404, 2735, 2769, 2976
BstH2I RGCGCY 2 cut(s) 605, 1112
BstHHI GCGC 2 cut(s) 604, 1111
BstMAI GTCTC 7 cut(s) 914, 978, 1220, 1997, 2186, 2555, 2804
BstMCI CGRYCG 2 cut(s) 175, 2327
BstMWI GCNNNNNNNGC 3 cut(s) 100, 1513, 2495
BstNI CCWGG 4 cut(s) 247, 513, 993, 2907
BstNSI RCATGY 2 cut(s) 1097, 2472
BstPAI GACNNNNGTC 1 cut(s) 174
BstPI GGTNACC 1 cut(s) 1691
BstSCI CCNGG 7 cut(s) 245, 292, 511, 621, 766, 991, 2905
BstSFI CTRYAG 2 cut(s) 1953, 2823
BstSLI GKGCMC 2 cut(s) 730, 2355
BstSNI TACGTA 1 cut(s) 1895
BstV1I GCAGC 7 cut(s) 80, 399, 783, 811, 1849, 2329, 2351
BstV2I GAAGAC 4 cut(s) 42, 220, 1115, 2856
BstX2I RGATCY 4 cut(s) 811, 1820, 1923, 2617
BstXI CCANNNNNNTGG 1 cut(s) 1877
BstYI RGATCY 4 cut(s) 811, 1820, 1923, 2617
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 9 cut(s) 174, 932, 996, 1363, 2726, 2756, 2821, 3005, 3027
BtrI CACGTC 3 cut(s) 1121, 1637, 2244
BtsCI GGATG 8 cut(s) 1255, 1675, 1708, 1839, 2404, 2735, 2769, 2976
BtsIMutI CAGTG 5 cut(s) 728, 926, 1501, 1968, 2225
Cac8I GCNNGC 5 cut(s) 59, 101, 316, 1518, 2470
CaiI CAGNNNCTG 3 cut(s) 91, 976, 1802
CciI TCATGA 1 cut(s) 1779
CfoI GCGC 2 cut(s) 604, 1111
Cfr10I RCCGGY 2 cut(s) 10, 3023
Cfr13I GGNCC 6 cut(s) 141, 249, 995, 2009, 2755, 3004
CseI GACGC 2 cut(s) 170, 2944
Csp6I GTAC 8 cut(s) 401, 947, 1049, 1600, 1649, 1892, 2460, 2583
CviQI GTAC 8 cut(s) 401, 947, 1049, 1600, 1649, 1892, 2460, 2583
DdeI CTNAG 7 cut(s) 303, 365, 504, 596, 1128, 1827, 2358
DraI TTTAAA 1 cut(s) 1569
DriI GACNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 4 cut(s) 172, 930, 1361, 3025
EagI CGGCCG 1 cut(s) 172
Eam1104I CTCTTC 7 cut(s) 110, 345, 912, 1038, 1206, 2722, 2815
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 7 cut(s) 110, 345, 912, 1038, 1206, 2722, 2815
EciI GGCGGA 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 2519
EclXI CGGCCG 1 cut(s) 172
Eco105I TACGTA 1 cut(s) 1895
Eco130I CCWWGG 1 cut(s) 1934
Eco24I GRGCYC 2 cut(s) 162, 2521
Eco31I GGTCTC 2 cut(s) 914, 1220
Eco32I GATATC 1 cut(s) 2071
Eco47I GGWCC 3 cut(s) 141, 249, 2009
Eco47III AGCGCT 2 cut(s) 603, 1110
Eco52I CGGCCG 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 2519
Eco57I CTGAAG 1 cut(s) 1097
Eco88I CYCGRG 2 cut(s) 73, 2933
Eco91I GGTNACC 1 cut(s) 1691
EcoICRI GAGCTC 1 cut(s) 2519
EcoO109I RGGNCCY 2 cut(s) 141, 2755
EcoO65I GGTNACC 1 cut(s) 1691
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 4 cut(s) 245, 511, 991, 2905
EcoRV GATATC 1 cut(s) 2071
EcoT14I CCWWGG 1 cut(s) 1934
EcoT38I GRGCYC 2 cut(s) 162, 2521
ErhI CCWWGG 1 cut(s) 1934
FalI AAGNNNNNCTT 4 cut(s) 1516, 1548, 2848, 2880
FaqI GGGAC 5 cut(s) 73, 127, 1339, 2236, 3029
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 7 cut(s) 69, 388, 772, 800, 1838, 2340, 2343
FokI GGATG 8 cut(s) 1262, 1682, 1715, 1846, 2411, 2722, 2756, 2963
FriOI GRGCYC 2 cut(s) 162, 2521
Fsp4HI GCNGC 7 cut(s) 69, 388, 772, 800, 1838, 2340, 2343
FspBI CTAG 4 cut(s) 1016, 1256, 2304, 2621
GlaI GCGC 2 cut(s) 603, 1110
GluI GCNGC 7 cut(s) 69, 388, 772, 800, 1838, 2340, 2343
GsaI CCCAGC 1 cut(s) 2045
GsuI CTGGAG 2 cut(s) 998, 2456
HaeII RGCGCY 2 cut(s) 605, 1112
HaeIII GGCC 9 cut(s) 174, 932, 996, 1363, 2726, 2756, 2821, 3005, 3027
HapII CCGG 8 cut(s) 11, 293, 623, 767, 2792, 2805, 2879, 3024
HgaI GACGC 2 cut(s) 170, 2944
HhaI GCGC 2 cut(s) 604, 1111
Hin1I GRCGYC 2 cut(s) 225, 2955
Hin6I GCGC 2 cut(s) 602, 1109
HinP1I GCGC 2 cut(s) 602, 1109
HincII GTYRAC 2 cut(s) 238, 439
HindII GTYRAC 2 cut(s) 238, 439
HindIII AAGCTT 3 cut(s) 113, 267, 1719
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 8 cut(s) 11, 293, 623, 767, 2792, 2805, 2879, 3024
HphI GGTGA 8 cut(s) 187, 386, 731, 1703, 1892, 2721, 2848, 2884
Hpy166II GTNNAC 8 cut(s) 52, 238, 439, 705, 1134, 1600, 1892, 2353
Hpy8I GTNNAC 8 cut(s) 52, 238, 439, 705, 1134, 1600, 1892, 2353
Hpy99I CGWCG 9 cut(s) 137, 173, 186, 227, 2248, 2380, 2606, 2887, 2960
HpyAV CCTTC 4 cut(s) 139, 262, 972, 1804
HpyCH4IV ACGT 7 cut(s) 225, 1120, 1435, 1636, 1894, 2243, 2375
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 1513, 2495
HpyF3I CTNAG 7 cut(s) 303, 365, 504, 596, 1128, 1827, 2358
HpySE526I ACGT 7 cut(s) 225, 1120, 1435, 1636, 1894, 2243, 2375
Hsp92I GRCGYC 2 cut(s) 225, 2955
HspAI GCGC 2 cut(s) 602, 1109
KflI GGGWCCC 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 439
LguI GCTCTTC 2 cut(s) 110, 2815
LmnI GCTCC 3 cut(s) 448, 2272, 2973
Lsp1109I GCAGC 7 cut(s) 80, 399, 783, 811, 1849, 2329, 2351
LweI GCATC 6 cut(s) 367, 1343, 1660, 1824, 2352, 2985
MaeI CTAG 4 cut(s) 1016, 1256, 2304, 2621
MaeII ACGT 7 cut(s) 225, 1120, 1435, 1636, 1894, 2243, 2375
MaeIII GTNAC 7 cut(s) 805, 1691, 1880, 1966, 2430, 2440, 2836
MflI RGATCY 4 cut(s) 811, 1820, 1923, 2617
MhlI GDGCHC 8 cut(s) 162, 730, 1015, 2040, 2277, 2355, 2521, 2592
MlsI TGGCCA 1 cut(s) 1363
MluNI TGGCCA 1 cut(s) 1363
MlyI GAGTC 6 cut(s) 197, 1129, 1556, 2188, 2316, 2945
Mox20I TGGCCA 1 cut(s) 1363
MroXI GAANNNNTTC 2 cut(s) 1032, 2115
MscI TGGCCA 1 cut(s) 1363
MslI CAYNNNNRTG 2 cut(s) 1278, 2985
Msp20I TGGCCA 1 cut(s) 1363
MspA1I CMGCKG 2 cut(s) 1340, 2342
MspI CCGG 8 cut(s) 11, 293, 623, 767, 2792, 2805, 2879, 3024
MspR9I CCNGG 7 cut(s) 247, 294, 513, 623, 768, 993, 2907
Mva1269I GAATGC 1 cut(s) 1397
MvaI CCWGG 4 cut(s) 247, 513, 993, 2907
MwoI GCNNNNNNNGC 3 cut(s) 100, 1513, 2495
NciI CCSGG 3 cut(s) 294, 623, 768
NlaIV GGNNCC 3 cut(s) 142, 143, 1460
NmeAIII GCCGAG 3 cut(s) 2571, 2702, 2739
NmuCI GTSAC 5 cut(s) 805, 1691, 1880, 1966, 2836
NspI RCATGY 2 cut(s) 1097, 2472
PaeI GCATGC 1 cut(s) 2472
PaeR7I CTCGAG 1 cut(s) 2933
PagI TCATGA 1 cut(s) 1779
PciSI GCTCTTC 2 cut(s) 110, 2815
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 1591, 2598, 2840
PctI GAATGC 1 cut(s) 1397
PdmI GAANNNNTTC 2 cut(s) 1032, 2115
PfeI GAWTC 9 cut(s) 661, 679, 895, 1028, 1054, 1103, 2230, 2672, 2875
PflFI GACNNNGTC 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 7 cut(s) 70, 389, 773, 801, 1839, 2341, 2344
Ple19I CGATCG 1 cut(s) 2327
PleI GAGTC 6 cut(s) 197, 1129, 1555, 2188, 2315, 2944
PpsI GAGTC 6 cut(s) 197, 1129, 1555, 2188, 2315, 2944
Ppu21I YACGTR 1 cut(s) 1895
PpuMI RGGWCCY 1 cut(s) 141
PshAI GACNNNNGTC 1 cut(s) 174
PsiI TTATAA 2 cut(s) 1166, 2532
Psp124BI GAGCTC 1 cut(s) 2521
Psp1406I AACGTT 1 cut(s) 1435
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 4 cut(s) 245, 511, 991, 2905
PspEI GGTNACC 1 cut(s) 1691
PspFI CCCAGC 1 cut(s) 2041
PspGI CCWGG 4 cut(s) 245, 511, 991, 2905
PspN4I GGNNCC 3 cut(s) 142, 143, 1460
PspPI GGNCC 6 cut(s) 141, 249, 995, 2009, 2755, 3004
PspPPI RGGWCCY 1 cut(s) 141
PspXI VCTCGAGB 1 cut(s) 2933
PsrI GAACNNNNNNTAC 2 cut(s) 1942, 1974
PstNI CAGNNNCTG 3 cut(s) 91, 976, 1802
PsuI RGATCY 4 cut(s) 811, 1820, 1923, 2617
PsyI GACNNNGTC 1 cut(s) 41
PvuI CGATCG 1 cut(s) 2327
PvuII CAGCTG 2 cut(s) 1340, 2342
RsaI GTAC 8 cut(s) 402, 948, 1050, 1601, 1650, 1893, 2461, 2584
RsaNI GTAC 8 cut(s) 401, 947, 1049, 1600, 1649, 1892, 2460, 2583
RseI CAYNNNNRTG 2 cut(s) 1278, 2985
SacI GAGCTC 1 cut(s) 2521
SapI GCTCTTC 2 cut(s) 110, 2815
SatI GCNGC 7 cut(s) 69, 388, 772, 800, 1838, 2340, 2343
Sau96I GGNCC 6 cut(s) 141, 249, 995, 2009, 2755, 3004
SchI GAGTC 6 cut(s) 197, 1129, 1556, 2188, 2316, 2945
ScrFI CCNGG 7 cut(s) 247, 294, 513, 623, 768, 993, 2907
SduI GDGCHC 8 cut(s) 162, 730, 1015, 2040, 2277, 2355, 2521, 2592
SfaNI GCATC 6 cut(s) 367, 1343, 1660, 1824, 2352, 2985
SfcI CTRYAG 2 cut(s) 1953, 2823
Sfr274I CTCGAG 1 cut(s) 2933
SinI GGWCC 3 cut(s) 141, 249, 2009
SlaI CTCGAG 1 cut(s) 2933
SmiMI CAYNNNNRTG 2 cut(s) 1278, 2985
SmlI CTYRAG 2 cut(s) 1614, 2933
SmoI CTYRAG 2 cut(s) 1614, 2933
SnaBI TACGTA 1 cut(s) 1895
SphI GCATGC 1 cut(s) 2472
SsiI CCGC 7 cut(s) 97, 138, 256, 572, 708, 1205, 2074
SspI AATATT 3 cut(s) 1184, 2115, 2159
SspMI CTAG 4 cut(s) 1016, 1256, 2304, 2621
SstI GAGCTC 1 cut(s) 2521
StyD4I CCNGG 7 cut(s) 245, 292, 511, 621, 766, 991, 2905
StyI CCWWGG 1 cut(s) 1934
TaiI ACGT 7 cut(s) 228, 1123, 1438, 1639, 1897, 2246, 2378
TaqII GACCGA 2 cut(s) 2026, 2317
TatI WGTACW 6 cut(s) 946, 1048, 1599, 1648, 2459, 2582
TfiI GAWTC 9 cut(s) 661, 679, 895, 1028, 1054, 1103, 2230, 2672, 2875
TscAI CASTG 5 cut(s) 735, 933, 1508, 1975, 2232
TseFI GTSAC 5 cut(s) 805, 1691, 1880, 1966, 2836
TseI GCWGC 7 cut(s) 68, 387, 771, 799, 1837, 2339, 2342
Tsp45I GTSAC 5 cut(s) 805, 1691, 1880, 1966, 2836
TspGWI ACGGA 3 cut(s) 824, 967, 2107
TspRI CASTG 5 cut(s) 735, 933, 1508, 1975, 2232
Tth111I GACNNNGTC 1 cut(s) 41
VneI GTGCAC 1 cut(s) 2351
VpaK11BI GGWCC 3 cut(s) 141, 249, 2009
XapI RAATTY 7 cut(s) 343, 955, 1020, 1288, 2249, 2525, 3009
XbaI TCTAGA 2 cut(s) 1015, 2303
XceI RCATGY 2 cut(s) 1097, 2472
XhoI CTCGAG 1 cut(s) 2933
XmnI GAANNNNTTC 2 cut(s) 1032, 2115
XspI CTAG 4 cut(s) 1016, 1256, 2304, 2621
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.