No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51050 |
| fragaria_vesca | FvH4_1g12400 FvH4_1g12400 |
| malus_domestica | MD02G1137100.v1.1 MD15G1250800.v1.1 |
| prunus_persica | Prupe.7G163500_v2.0.a1 Prupe.7G163500_v2.0.a1 |
| pyrus_communis | pycom02g10850 pycom15g22120 |
| rosa_chinensis | RchiOBHm_Chr2g0100261 |
| rosa_laevigata | RLG00000016950 |
| rosa_multiflora | Rmu_sc0002547.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00142440 |
| rosa_rugosa | Rorug02G0086900 |
| rosa_samantha | Rh2AG135900 Rh2BG139400 Rh2CG141200 Rh2DG141400 |
| rosa_wichuraiana | Rw2G010630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1028 |
| Acc36I | ACCTGC | 1 cut(s) | 2185 |
| AccB1I | GGYRCC | 2 cut(s) | 1162, 3369 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2032 |
| AccBSI | CCGCTC | 1 cut(s) | 35 |
| AccI | GTMKAC | 2 cut(s) | 5, 807 |
| AccII | CGCG | 3 cut(s) | 77, 221, 223 |
| AccIII | TCCGGA | 1 cut(s) | 2763 |
| AclWI | GGATC | 6 cut(s) | 751, 1698, 2402, 3156, 3169, 3586 |
| AcoI | YGGCCR | 5 cut(s) | 114, 188, 1824, 2148, 3361 |
| AcsI | RAATTY | 6 cut(s) | 901, 1004, 1272, 2118, 2488, 2684 |
| AcuI | CTGAAG | 6 cut(s) | 1850, 1873, 2360, 2577, 3572, 3775 |
| AcyI | GRCGYC | 2 cut(s) | 80, 2016 |
| AdeI | CACNNNGTG | 1 cut(s) | 1402 |
| AfaI | GTAC | 7 cut(s) | 508, 995, 1044, 1196, 1934, 2903, 3210 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 109, 186, 1660, 2032, 2104, 2130, 2986, 3744 |
| AflII | CTTAAG | 1 cut(s) | 1433 |
| AflIII | ACRYGT | 2 cut(s) | 1075, 1612 |
| AhlI | ACTAGT | 1 cut(s) | 3799 |
| AjnI | CCWGG | 9 cut(s) | 2176, 2189, 2662, 2848, 3117, 3436, 3631, 3767, 3775 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1128, 1160, 1805, 1837 |
| Alw21I | GWGCWC | 4 cut(s) | 48, 787, 2077, 3307 |
| Alw26I | GTCTC | 5 cut(s) | 198, 508, 962, 1349, 1750 |
| AlwI | GGATC | 6 cut(s) | 751, 1698, 2402, 3156, 3169, 3586 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2032, 2498 |
| Aor13HI | TCCGGA | 1 cut(s) | 2763 |
| ApaI | GGGCCC | 2 cut(s) | 179, 3784 |
| ApoI | RAATTY | 6 cut(s) | 901, 1004, 1272, 2118, 2488, 2684 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 423, 3021, 3557 |
| AspLEI | GCGC | 2 cut(s) | 223, 3140 |
| AspS9I | GGNCC | 8 cut(s) | 175, 176, 1218, 1472, 2977, 3541, 3780, 3781 |
| AsuNHI | GCTAGC | 1 cut(s) | 1105 |
| AvaII | GGWCC | 3 cut(s) | 1472, 2977, 3541 |
| BaeGI | GKGCMC | 3 cut(s) | 179, 3453, 3784 |
| BalI | TGGCCA | 3 cut(s) | 1826, 2150, 3363 |
| BamHI | GGATCC | 1 cut(s) | 3161 |
| BanI | GGYRCC | 2 cut(s) | 1162, 3369 |
| BanII | GRGCYC | 6 cut(s) | 48, 179, 787, 3307, 3717, 3784 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 550, 582, 2722, 2754 |
| BauI | CACGAG | 4 cut(s) | 552, 1871, 2076, 3731 |
| BbsI | GAAGAC | 3 cut(s) | 416, 696, 3068 |
| Bbv12I | GWGCWC | 4 cut(s) | 48, 787, 2077, 3307 |
| BbvCI | CCTCAGC | 2 cut(s) | 1101, 3693 |
| BceAI | ACGGC | 4 cut(s) | 101, 175, 1993, 1999 |
| BciT130I | CCWGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| BcoDI | GTCTC | 5 cut(s) | 198, 508, 962, 1349, 1750 |
| BcuI | ACTAGT | 1 cut(s) | 3799 |
| BfoI | RGCGCY | 1 cut(s) | 3141 |
| BfrI | CTTAAG | 1 cut(s) | 1433 |
| BfuAI | ACCTGC | 1 cut(s) | 2185 |
| BglII | AGATCT | 1 cut(s) | 754 |
| BlpI | GCTNAGC | 2 cut(s) | 288, 3141 |
| BmcAI | AGTACT | 1 cut(s) | 508 |
| Bme1390I | CCNGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| Bme18I | GGWCC | 3 cut(s) | 1472, 2977, 3541 |
| BmgT120I | GGNCC | 8 cut(s) | 175, 176, 1218, 1472, 2977, 3541, 3780, 3781 |
| BmrFI | CCNGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| BmrI | ACTGGG | 3 cut(s) | 621, 2893, 3753 |
| BmsI | GCATC | 8 cut(s) | 517, 1893, 2489, 2587, 2609, 2725, 3041, 3481 |
| BmtI | GCTAGC | 1 cut(s) | 1109 |
| BmuI | ACTGGG | 3 cut(s) | 621, 2893, 3753 |
| BpiI | GAAGAC | 3 cut(s) | 416, 696, 3068 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3686, 3718 |
| BpmI | CTGGAG | 4 cut(s) | 2054, 3495, 3624, 3654 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1101, 3693 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 288, 3141 |
| BpuEI | CTTGAG | 2 cut(s) | 344, 3677 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2244 |
| BsaHI | GRCGYC | 2 cut(s) | 80, 2016 |
| BsaJI | CCNNGG | 6 cut(s) | 895, 2177, 2701, 3165, 3385, 3776 |
| BsaWI | WCCGGW | 4 cut(s) | 37, 1793, 2153, 2763 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1616, 1646, 1655, 1685, 3839, 3869 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 109, 186, 1660, 2032, 2104, 2130, 2986, 3744 |
| Bse118I | RCCGGY | 3 cut(s) | 109, 158, 2534 |
| Bse1I | ACTGG | 4 cut(s) | 616, 704, 2899, 3748 |
| Bse3DI | GCAATG | 1 cut(s) | 282 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2244 |
| BseAI | TCCGGA | 1 cut(s) | 2763 |
| BseBI | CCWGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| BseDI | CCNNGG | 6 cut(s) | 895, 2177, 2701, 3165, 3385, 3776 |
| BseJI | GATNNNNATC | 1 cut(s) | 2244 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 109, 186, 1660, 2032, 2104, 2130, 2986, 3744 |
| BseMI | GCAATG | 1 cut(s) | 282 |
| BseMII | CTCAG | 6 cut(s) | 279, 1012, 1115, 2079, 3132, 3684 |
| BseNI | ACTGG | 4 cut(s) | 616, 704, 2899, 3748 |
| BseRI | GAGGAG | 1 cut(s) | 1580 |
| BseSI | GKGCMC | 3 cut(s) | 179, 3453, 3784 |
| BseX3I | CGGCCG | 2 cut(s) | 114, 188 |
| BsgI | GTGCAG | 1 cut(s) | 1424 |
| Bsh1236I | CGCG | 3 cut(s) | 77, 221, 223 |
| Bsh1285I | CGRYCG | 4 cut(s) | 117, 191, 1945, 1962 |
| BshNI | GGYRCC | 2 cut(s) | 1162, 3369 |
| BsiEI | CGRYCG | 4 cut(s) | 117, 191, 1945, 1962 |
| BsiHKAI | GWGCWC | 4 cut(s) | 48, 787, 2077, 3307 |
| BslFI | GGGAC | 3 cut(s) | 1485, 2963, 3527 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 109, 186, 1660, 2032, 2104, 2130, 2986, 3744 |
| BsmAI | GTCTC | 5 cut(s) | 198, 508, 962, 1349, 1750 |
| BsmBI | CGTCTC | 3 cut(s) | 198, 962, 1349 |
| BsmFI | GGGAC | 3 cut(s) | 1485, 2963, 3527 |
| BsmI | GAATGC | 1 cut(s) | 3557 |
| Bsp120I | GGGCCC | 2 cut(s) | 175, 3780 |
| Bsp1286I | GDGCHC | 8 cut(s) | 48, 179, 787, 2077, 3307, 3453, 3717, 3784 |
| Bsp13I | TCCGGA | 1 cut(s) | 2763 |
| Bsp1407I | TGTACA | 1 cut(s) | 1042 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 288, 3141 |
| Bsp19I | CCATGG | 3 cut(s) | 895, 3165, 3385 |
| BspCNI | CTCAG | 6 cut(s) | 280, 1011, 1114, 2080, 3133, 3685 |
| BspEI | TCCGGA | 1 cut(s) | 2763 |
| BspFNI | CGCG | 3 cut(s) | 77, 221, 223 |
| BspHI | TCATGA | 1 cut(s) | 1596 |
| BspMI | ACCTGC | 1 cut(s) | 2185 |
| BspOI | GCTAGC | 1 cut(s) | 1109 |
| BspPI | GGATC | 6 cut(s) | 751, 1698, 2402, 3156, 3169, 3586 |
| BspT107I | GGYRCC | 2 cut(s) | 1162, 3369 |
| BspTI | CTTAAG | 1 cut(s) | 1433 |
| BsrBI | CCGCTC | 1 cut(s) | 35 |
| BsrDI | GCAATG | 1 cut(s) | 282 |
| BsrFI | RCCGGY | 3 cut(s) | 109, 158, 2534 |
| BsrGI | TGTACA | 1 cut(s) | 1042 |
| BsrI | ACTGG | 4 cut(s) | 616, 704, 2899, 3748 |
| BssAI | RCCGGY | 3 cut(s) | 109, 158, 2534 |
| BssECI | CCNNGG | 6 cut(s) | 895, 2177, 2701, 3165, 3385, 3776 |
| BssNAI | GTATAC | 1 cut(s) | 808 |
| BssNI | GRCGYC | 2 cut(s) | 80, 2016 |
| BssSI | CACGAG | 4 cut(s) | 552, 1871, 2076, 3731 |
| BssT1I | CCWWGG | 3 cut(s) | 895, 3165, 3385 |
| Bst1107I | GTATAC | 1 cut(s) | 808 |
| Bst2BI | CACGAG | 4 cut(s) | 552, 1871, 2076, 3731 |
| Bst2UI | CCWGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| Bst4CI | ACNGT | 8 cut(s) | 768, 876, 928, 2500, 2607, 2654, 3151, 3455 |
| Bst6I | CTCTTC | 4 cut(s) | 1598, 1869, 2725, 3791 |
| BstACI | GRCGYC | 2 cut(s) | 80, 2016 |
| BstAFI | CTTAAG | 1 cut(s) | 1433 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2525, 3048 |
| BstAUI | TGTACA | 1 cut(s) | 1042 |
| BstC8I | GCNNGC | 9 cut(s) | 111, 160, 1107, 1299, 1758, 2132, 2136, 3053, 3443 |
| BstDEI | CTNAG | 7 cut(s) | 288, 998, 1101, 2088, 2404, 3141, 3693 |
| BstDSI | CCRYGG | 3 cut(s) | 895, 3165, 3385 |
| BstEII | GGTNACC | 1 cut(s) | 1231 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1658, 2128 |
| BstFNI | CGCG | 3 cut(s) | 77, 221, 223 |
| BstH2I | RGCGCY | 1 cut(s) | 3141 |
| BstHHI | GCGC | 2 cut(s) | 223, 3140 |
| BstMAI | GTCTC | 5 cut(s) | 198, 508, 962, 1349, 1750 |
| BstMCI | CGRYCG | 4 cut(s) | 117, 191, 1945, 1962 |
| BstNI | CCWGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| BstNSI | RCATGY | 5 cut(s) | 1079, 1558, 1616, 1745, 2679 |
| BstPI | GGTNACC | 1 cut(s) | 1231 |
| BstSCI | CCNGG | 9 cut(s) | 2176, 2189, 2662, 2848, 3117, 3436, 3631, 3767, 3775 |
| BstSLI | GKGCMC | 3 cut(s) | 179, 3453, 3784 |
| BstUI | CGCG | 3 cut(s) | 77, 221, 223 |
| BstV2I | GAAGAC | 3 cut(s) | 416, 696, 3068 |
| BstX2I | RGATCY | 3 cut(s) | 754, 2407, 3161 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 578, 2906, 3125 |
| BstYI | RGATCY | 3 cut(s) | 754, 2407, 3161 |
| BstZ17I | GTATAC | 1 cut(s) | 808 |
| BstZI | CGGCCG | 2 cut(s) | 114, 188 |
| BtgI | CCRYGG | 3 cut(s) | 895, 3165, 3385 |
| BtgZI | GCGATG | 1 cut(s) | 2159 |
| BtsIMutI | CAGTG | 4 cut(s) | 346, 1137, 3548, 3717 |
| BveI | ACCTGC | 1 cut(s) | 2185 |
| Cac8I | GCNNGC | 9 cut(s) | 111, 160, 1107, 1299, 1758, 2132, 2136, 3053, 3443 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2032, 2498 |
| CciI | TCATGA | 1 cut(s) | 1596 |
| CfoI | GCGC | 2 cut(s) | 223, 3140 |
| Cfr10I | RCCGGY | 3 cut(s) | 109, 158, 2534 |
| Cfr13I | GGNCC | 8 cut(s) | 175, 176, 1218, 1472, 2977, 3541, 3780, 3781 |
| CseI | GACGC | 2 cut(s) | 88, 2024 |
| Csp6I | GTAC | 7 cut(s) | 507, 994, 1043, 1195, 1933, 2902, 3209 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2954, 2989 |
| CviQI | GTAC | 7 cut(s) | 507, 994, 1043, 1195, 1933, 2902, 3209 |
| DdeI | CTNAG | 7 cut(s) | 288, 998, 1101, 2088, 2404, 3141, 3693 |
| DraIII | CACNNNGTG | 1 cut(s) | 1402 |
| EaeI | YGGCCR | 5 cut(s) | 114, 188, 1824, 2148, 3361 |
| EagI | CGGCCG | 2 cut(s) | 114, 188 |
| Eam1104I | CTCTTC | 4 cut(s) | 1598, 1869, 2725, 3791 |
| EarI | CTCTTC | 4 cut(s) | 1598, 1869, 2725, 3791 |
| EciI | GGCGGA | 1 cut(s) | 2388 |
| Ecl136II | GAGCTC | 3 cut(s) | 46, 785, 3305 |
| EclXI | CGGCCG | 2 cut(s) | 114, 188 |
| Eco130I | CCWWGG | 3 cut(s) | 895, 3165, 3385 |
| Eco147I | AGGCCT | 1 cut(s) | 1099 |
| Eco24I | GRGCYC | 6 cut(s) | 48, 179, 787, 3307, 3717, 3784 |
| Eco32I | GATATC | 1 cut(s) | 3627 |
| Eco47I | GGWCC | 3 cut(s) | 1472, 2977, 3541 |
| Eco52I | CGGCCG | 2 cut(s) | 114, 188 |
| Eco53kI | GAGCTC | 3 cut(s) | 46, 785, 3305 |
| Eco57I | CTGAAG | 6 cut(s) | 1850, 1873, 2360, 2577, 3572, 3775 |
| Eco91I | GGTNACC | 1 cut(s) | 1231 |
| EcoICRI | GAGCTC | 3 cut(s) | 46, 785, 3305 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1658, 2128 |
| EcoO109I | RGGNCCY | 5 cut(s) | 176, 1218, 2977, 3780, 3781 |
| EcoO65I | GGTNACC | 1 cut(s) | 1231 |
| EcoRI | GAATTC | 2 cut(s) | 1272, 2684 |
| EcoRII | CCWGG | 9 cut(s) | 2176, 2189, 2662, 2848, 3117, 3436, 3631, 3767, 3775 |
| EcoRV | GATATC | 1 cut(s) | 3627 |
| EcoT14I | CCWWGG | 3 cut(s) | 895, 3165, 3385 |
| EcoT22I | ATGCAT | 2 cut(s) | 437, 2602 |
| EcoT38I | GRGCYC | 6 cut(s) | 48, 179, 787, 3307, 3717, 3784 |
| ErhI | CCWWGG | 3 cut(s) | 895, 3165, 3385 |
| Esp3I | CGTCTC | 3 cut(s) | 198, 962, 1349 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1301, 1333, 3060, 3092, 3579, 3611 |
| FaqI | GGGAC | 3 cut(s) | 1485, 2963, 3527 |
| FauI | CCCGC | 3 cut(s) | 111, 1962, 3508 |
| FauNDI | CATATG | 1 cut(s) | 979 |
| FblI | GTMKAC | 2 cut(s) | 5, 807 |
| FriOI | GRGCYC | 6 cut(s) | 48, 179, 787, 3307, 3717, 3784 |
| GlaI | GCGC | 2 cut(s) | 222, 3139 |
| GsuI | CTGGAG | 4 cut(s) | 2054, 3495, 3624, 3654 |
| HaeII | RGCGCY | 1 cut(s) | 3141 |
| HgaI | GACGC | 2 cut(s) | 88, 2024 |
| HhaI | GCGC | 2 cut(s) | 223, 3140 |
| Hin1I | GRCGYC | 2 cut(s) | 80, 2016 |
| Hin6I | GCGC | 2 cut(s) | 221, 3138 |
| HinP1I | GCGC | 2 cut(s) | 221, 3138 |
| HincII | GTYRAC | 3 cut(s) | 6, 931, 3480 |
| HindII | GTYRAC | 3 cut(s) | 6, 931, 3480 |
| HindIII | AAGCTT | 1 cut(s) | 3053 |
| HpaI | GTTAAC | 1 cut(s) | 3480 |
| Hpy166II | GTNNAC | 7 cut(s) | 6, 808, 931, 1195, 1517, 3209, 3480 |
| Hpy8I | GTNNAC | 7 cut(s) | 6, 808, 931, 1195, 1517, 3209, 3480 |
| Hpy99I | CGWCG | 8 cut(s) | 62, 82, 122, 1967, 1985, 2006, 2018, 2218 |
| HpyCH4III | ACNGT | 8 cut(s) | 768, 876, 928, 2500, 2607, 2654, 3151, 3455 |
| HpyCH4IV | ACGT | 3 cut(s) | 1450, 2213, 3178 |
| HpyF3I | CTNAG | 7 cut(s) | 288, 998, 1101, 2088, 2404, 3141, 3693 |
| HpySE526I | ACGT | 3 cut(s) | 1450, 2213, 3178 |
| Hsp92I | GRCGYC | 2 cut(s) | 80, 2016 |
| HspAI | GCGC | 2 cut(s) | 221, 3138 |
| KflI | GGGWCCC | 1 cut(s) | 2977 |
| Kpn2I | TCCGGA | 1 cut(s) | 2763 |
| KroI | GCCGGC | 2 cut(s) | 109, 158 |
| KroNI | GCCGGC | 2 cut(s) | 111, 160 |
| KspAI | GTTAAC | 1 cut(s) | 3480 |
| LmnI | GCTCC | 8 cut(s) | 23, 40, 278, 782, 1663, 1796, 2035, 3310 |
| LweI | GCATC | 8 cut(s) | 517, 1893, 2489, 2587, 2609, 2725, 3041, 3481 |
| MaeII | ACGT | 3 cut(s) | 1450, 2213, 3178 |
| MaeIII | GTNAC | 7 cut(s) | 1231, 1394, 1789, 2209, 3421, 3733, 3838 |
| MbiI | CCGCTC | 1 cut(s) | 35 |
| MfeI | CAATTG | 1 cut(s) | 209 |
| MflI | RGATCY | 3 cut(s) | 754, 2407, 3161 |
| MhlI | GDGCHC | 8 cut(s) | 48, 179, 787, 2077, 3307, 3453, 3717, 3784 |
| MlsI | TGGCCA | 3 cut(s) | 1826, 2150, 3363 |
| MluNI | TGGCCA | 3 cut(s) | 1826, 2150, 3363 |
| MlyI | GAGTC | 2 cut(s) | 234, 2852 |
| MmeI | TCCRAC | 2 cut(s) | 276, 3295 |
| Mox20I | TGGCCA | 3 cut(s) | 1826, 2150, 3363 |
| Mph1103I | ATGCAT | 2 cut(s) | 437, 2602 |
| MreI | CGCCGGCG | 1 cut(s) | 109 |
| MroI | TCCGGA | 1 cut(s) | 2763 |
| MroNI | GCCGGC | 2 cut(s) | 109, 158 |
| MroXI | GAANNNNTTC | 3 cut(s) | 423, 3021, 3557 |
| MscI | TGGCCA | 3 cut(s) | 1826, 2150, 3363 |
| MslI | CAYNNNNRTG | 6 cut(s) | 249, 1832, 3084, 3170, 3390, 3818 |
| Msp20I | TGGCCA | 3 cut(s) | 1826, 2150, 3363 |
| MspA1I | CMGCKG | 4 cut(s) | 1238, 2798, 3515, 3602 |
| MspCI | CTTAAG | 1 cut(s) | 1433 |
| MspR9I | CCNGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| MunI | CAATTG | 1 cut(s) | 209 |
| Mva1269I | GAATGC | 1 cut(s) | 3557 |
| MvaI | CCWGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| MvnI | CGCG | 3 cut(s) | 77, 221, 223 |
| NaeI | GCCGGC | 2 cut(s) | 111, 160 |
| NcoI | CCATGG | 3 cut(s) | 895, 3165, 3385 |
| NdeI | CATATG | 1 cut(s) | 979 |
| NgoMIV | GCCGGC | 2 cut(s) | 109, 158 |
| NheI | GCTAGC | 1 cut(s) | 1105 |
| NmuCI | GTSAC | 5 cut(s) | 1231, 1394, 1789, 3733, 3838 |
| NsiI | ATGCAT | 2 cut(s) | 437, 2602 |
| NspI | RCATGY | 5 cut(s) | 1079, 1558, 1616, 1745, 2679 |
| PagI | TCATGA | 1 cut(s) | 1596 |
| PceI | AGGCCT | 1 cut(s) | 1099 |
| PciI | ACATGT | 2 cut(s) | 1075, 1612 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 54, 550, 2010 |
| PctI | GAATGC | 1 cut(s) | 3557 |
| PdiI | GCCGGC | 2 cut(s) | 111, 160 |
| PdmI | GAANNNNTTC | 3 cut(s) | 423, 3021, 3557 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2032 |
| PfoI | TCCNGGA | 2 cut(s) | 2662, 2848 |
| Ple19I | CGATCG | 1 cut(s) | 1962 |
| PleI | GAGTC | 2 cut(s) | 233, 2852 |
| PpsI | GAGTC | 2 cut(s) | 233, 2852 |
| PpuMI | RGGWCCY | 1 cut(s) | 2977 |
| PscI | ACATGT | 2 cut(s) | 1075, 1612 |
| PsiI | TTATAA | 1 cut(s) | 1028 |
| Psp124BI | GAGCTC | 3 cut(s) | 48, 787, 3307 |
| Psp5II | RGGWCCY | 1 cut(s) | 2977 |
| Psp6I | CCWGG | 9 cut(s) | 2176, 2189, 2662, 2848, 3117, 3436, 3631, 3767, 3775 |
| PspEI | GGTNACC | 1 cut(s) | 1231 |
| PspGI | CCWGG | 9 cut(s) | 2176, 2189, 2662, 2848, 3117, 3436, 3631, 3767, 3775 |
| PspOMI | GGGCCC | 2 cut(s) | 175, 3780 |
| PspPI | GGNCC | 8 cut(s) | 175, 176, 1218, 1472, 2977, 3541, 3780, 3781 |
| PspPPI | RGGWCCY | 1 cut(s) | 2977 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2032, 2498 |
| PsuI | RGATCY | 3 cut(s) | 754, 2407, 3161 |
| PvuI | CGATCG | 1 cut(s) | 1962 |
| PvuII | CAGCTG | 2 cut(s) | 2798, 3602 |
| RsaI | GTAC | 7 cut(s) | 508, 995, 1044, 1196, 1934, 2903, 3210 |
| RsaNI | GTAC | 7 cut(s) | 507, 994, 1043, 1195, 1933, 2902, 3209 |
| RseI | CAYNNNNRTG | 6 cut(s) | 249, 1832, 3084, 3170, 3390, 3818 |
| SacI | GAGCTC | 3 cut(s) | 48, 787, 3307 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| Sau96I | GGNCC | 8 cut(s) | 175, 176, 1218, 1472, 2977, 3541, 3780, 3781 |
| ScaI | AGTACT | 1 cut(s) | 508 |
| SchI | GAGTC | 2 cut(s) | 234, 2852 |
| ScrFI | CCNGG | 9 cut(s) | 2178, 2191, 2664, 2850, 3119, 3438, 3633, 3769, 3777 |
| SduI | GDGCHC | 8 cut(s) | 48, 179, 787, 2077, 3307, 3453, 3717, 3784 |
| SfaNI | GCATC | 8 cut(s) | 517, 1893, 2489, 2587, 2609, 2725, 3041, 3481 |
| SgrAI | CRCCGGYG | 1 cut(s) | 109 |
| SinI | GGWCC | 3 cut(s) | 1472, 2977, 3541 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 249, 1832, 3084, 3170, 3390, 3818 |
| SmlI | CTYRAG | 3 cut(s) | 359, 1433, 3656 |
| SmoI | CTYRAG | 3 cut(s) | 359, 1433, 3656 |
| SpeI | ACTAGT | 1 cut(s) | 3799 |
| SseBI | AGGCCT | 1 cut(s) | 1099 |
| SspI | AATATT | 1 cut(s) | 2578 |
| SstI | GAGCTC | 3 cut(s) | 48, 787, 3307 |
| StuI | AGGCCT | 1 cut(s) | 1099 |
| StyD4I | CCNGG | 9 cut(s) | 2176, 2189, 2662, 2848, 3117, 3436, 3631, 3767, 3775 |
| StyI | CCWWGG | 3 cut(s) | 895, 3165, 3385 |
| TaaI | ACNGT | 8 cut(s) | 768, 876, 928, 2500, 2607, 2654, 3151, 3455 |
| TaiI | ACGT | 3 cut(s) | 1453, 2216, 3181 |
| TatI | WGTACW | 2 cut(s) | 506, 1042 |
| TauI | GCSGC | 7 cut(s) | 35, 74, 77, 109, 116, 190, 2716 |
| TscAI | CASTG | 4 cut(s) | 346, 1137, 3555, 3724 |
| TseFI | GTSAC | 5 cut(s) | 1231, 1394, 1789, 3733, 3838 |
| Tsp45I | GTSAC | 5 cut(s) | 1231, 1394, 1789, 3733, 3838 |
| TspGWI | ACGGA | 3 cut(s) | 619, 1331, 3291 |
| TspRI | CASTG | 4 cut(s) | 346, 1137, 3555, 3724 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2032 |
| Vha464I | CTTAAG | 1 cut(s) | 1433 |
| VpaK11BI | GGWCC | 3 cut(s) | 1472, 2977, 3541 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1658, 2128 |
| XapI | RAATTY | 6 cut(s) | 901, 1004, 1272, 2118, 2488, 2684 |
| XbaI | TCTAGA | 3 cut(s) | 1708, 3106, 3287 |
| XceI | RCATGY | 5 cut(s) | 1079, 1558, 1616, 1745, 2679 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2197, 3125 |
| XmiI | GTMKAC | 2 cut(s) | 5, 807 |
| XmnI | GAANNNNTTC | 3 cut(s) | 423, 3021, 3557 |
| ZrmI | AGTACT | 1 cut(s) | 508 |
| Zsp2I | ATGCAT | 2 cut(s) | 437, 2602 |