Rorug02G0086900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011838
Physical Location & Seq
Forward (+)
6909333 .. 6910442
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0086900.1

Sequence Viewer

Length: 813 bp
ATGACGGCGACTGTGTGTCTCAAGGCCACTCGCTCCTTCTTAAAGTTAAACCCCCTTCCATTCTCTCGCTCCCTCTCACATCCCAAACACCACCACTTCCTCTCTTTCCCCAAAACCCGCATCTCCAATTTCGCCACCGTCACCATGTCGTCATCCTCCGTCGTCGAGCACATCGTCCTCTTCAAGGTCAAAGACGACACCGACCCCTCCAAGGTCAACTCCATGGTCAACGGCCTCAACGGCCTGACCTCCCTCGATCTCACCCTCCACCTCACCGCCGGTCCCCTCCTCCGCACCCGATCCTCCCCCTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAAGACCAAAGACGACCTCGCCGCCTATACCGTCCACCCGGGCCACCTCAGCGTCGTCAAGGAGTCCGTTCTCCCGATCTGCGATGACGTCATGGCCGTTGACTGGGTCGCGGATGGGTTGACGGGCCCGGTGGGTCCTTCGCCGGGGTCCGCGATCCGGGTCACGTTTTTGAAGTTGAAGGAGGAGCTGGGGGAGGCGGCGAAAGGTGAGATTTTGGAGGTGATTAAAGGGATTAAGGGGAAGTTCGGAGAGGTGGGGCAGATTAGTGTGGGCGAGAACTTCTCGCCGGCAAGGGCTAAAGGGTATTCGATTGCTTCAGTGGCGGTTTTCTTCGAGGGAGTGAGCGAGATGGAGGCCGTGGATTCGAAGGAGGAGCTGGCGAAGCTGGAGAAGGACAAAGTTAGGGAGTACTTGGACAGCGTCATTGTTCTTGACTATGTTGTTCCATCGCCCCAATCTGCAAGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.29

Weight (kDa)

7.16

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 55 - 150 1.2e-20 Stress responsive A/B Barrel Domain
Dabb PF07876 167 - 262 1.9e-12 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51050
fragaria_vesca FvH4_1g12400 FvH4_1g12400
malus_domestica MD02G1137100.v1.1 MD15G1250800.v1.1
prunus_persica Prupe.7G163500_v2.0.a1 Prupe.7G163500_v2.0.a1
pyrus_communis pycom02g10850 pycom15g22120
rosa_chinensis RchiOBHm_Chr2g0100261
rosa_laevigata RLG00000016950
rosa_multiflora Rmu_sc0002547.1_g000015
rosa_roxburghii Rroxscaffold_2G00142440
rosa_rugosa Rorug02G0086900
rosa_samantha Rh2AG135900 Rh2BG139400 Rh2CG141200 Rh2DG141400
rosa_wichuraiana Rw2G010630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 432
AccII CGCG 2 cut(s) 452, 494
AciI CCGC 9 cut(s) 118, 276, 292, 337, 363, 452, 492, 539, 665
AclWI GGATC 2 cut(s) 294, 490
AcoI YGGCCR 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 1 cut(s) 752
AfiI CCNNNNNNNGG 5 cut(s) 184, 211, 444, 485, 498
AgsI TTSAA 3 cut(s) 184, 514, 520
AhdI GACNNNNNGTC 1 cut(s) 15
AluBI AGCT 3 cut(s) 529, 718, 727
AluI AGCT 3 cut(s) 529, 718, 727
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 294, 490
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 7 cut(s) 24, 232, 241, 382, 435, 466, 696
ApaI GGGCCC 1 cut(s) 470
AspS9I GGNCC 6 cut(s) 281, 382, 466, 467, 476, 489
AsuC2I CCSGG 5 cut(s) 380, 381, 470, 486, 500
AsuHPI GGTGA 6 cut(s) 133, 253, 265, 310, 560, 574
AsuII TTCGAA 1 cut(s) 707
AvaI CYCGRG 1 cut(s) 379
AvaII GGWCC 3 cut(s) 281, 476, 489
BaeGI GKGCMC 1 cut(s) 470
BanII GRGCYC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 389
BccI CCATC 3 cut(s) 449, 685, 796
BceAI ACGGC 5 cut(s) 21, 247, 256, 422, 683
BcnI CCSGG 5 cut(s) 380, 381, 470, 486, 500
BcoDI GTCTC 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 3 cut(s) 337, 363, 540
BlsI GCNGC 3 cut(s) 338, 364, 541
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 5 cut(s) 380, 381, 470, 486, 500
Bme18I GGWCC 3 cut(s) 281, 476, 489
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 6 cut(s) 281, 382, 466, 467, 476, 489
BmiI GGNNCC 4 cut(s) 283, 468, 477, 490
BmrFI CCNGG 5 cut(s) 380, 381, 470, 486, 500
BmrI ACTGGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 454
BplI GAGNNNNNCTC 2 cut(s) 608, 640
BpmI CTGGAG 1 cut(s) 749
Bpu10I CCTNAGC 1 cut(s) 389
Bpu14I TTCGAA 1 cut(s) 707
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 5 cut(s) 380, 381, 470, 486, 500
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 5 cut(s) 210, 222, 379, 485, 699
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 211, 444, 485, 498
Bse118I RCCGGY 2 cut(s) 278, 628
Bse1I ACTGG 1 cut(s) 449
BseDI CCNNGG 5 cut(s) 210, 222, 379, 485, 699
BseGI GGATG 3 cut(s) 79, 152, 460
BseLI CCNNNNNNNGG 5 cut(s) 184, 211, 444, 485, 498
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 4 cut(s) 278, 317, 539, 728
BseSI GKGCMC 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 529
Bsh1236I CGCG 2 cut(s) 452, 494
BshFI GGCC 7 cut(s) 26, 234, 243, 384, 437, 468, 698
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 6 cut(s) 279, 380, 470, 485, 499, 629
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 5 cut(s) 184, 211, 444, 485, 498
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 7 cut(s) 26, 234, 243, 384, 437, 468, 698
BsoBI CYCGRG 1 cut(s) 379
Bsp119I TTCGAA 1 cut(s) 707
Bsp120I GGGCCC 1 cut(s) 466
Bsp1286I GDGCHC 2 cut(s) 171, 470
Bsp143I GATC 4 cut(s) 256, 299, 417, 495
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 9 cut(s) 118, 276, 292, 337, 363, 452, 492, 539, 665
BspANI GGCC 7 cut(s) 26, 234, 243, 384, 437, 468, 698
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 2 cut(s) 452, 494
BspLI GGNNCC 4 cut(s) 283, 468, 477, 490
BspPI GGATC 2 cut(s) 294, 490
BspT104I TTCGAA 1 cut(s) 707
BsrFI RCCGGY 2 cut(s) 278, 628
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 2 cut(s) 278, 628
BssECI CCNNGG 5 cut(s) 210, 222, 379, 485, 699
BssMI GATC 4 cut(s) 256, 299, 417, 495
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 2 cut(s) 210, 222
Bst4CI ACNGT 3 cut(s) 13, 139, 373
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 429
BstBI TTCGAA 1 cut(s) 707
BstC8I GCNNGC 2 cut(s) 630, 720
BstDEI CTNAG 1 cut(s) 389
BstDSI CCRYGG 2 cut(s) 222, 699
BstENI CCTNNNNNAGG 1 cut(s) 182
BstF5I GGATG 3 cut(s) 79, 152, 460
BstFNI CGCG 2 cut(s) 452, 494
BstKTI GATC 4 cut(s) 259, 302, 420, 498
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 256, 299, 417, 495
BstMWI GCNNNNNNNGC 4 cut(s) 240, 390, 662, 724
BstSCI CCNGG 5 cut(s) 378, 379, 468, 484, 498
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 2 cut(s) 452, 494
BsuRI GGCC 7 cut(s) 26, 234, 243, 384, 437, 468, 698
BtgI CCRYGG 2 cut(s) 222, 699
BtgZI GCGATG 2 cut(s) 438, 774
BtsCI GGATG 3 cut(s) 79, 152, 460
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 2 cut(s) 630, 720
Cfr10I RCCGGY 2 cut(s) 278, 628
Cfr13I GGNCC 6 cut(s) 281, 382, 466, 467, 476, 489
Cfr9I CCCGGG 1 cut(s) 379
CseI GACGC 2 cut(s) 382, 751
Csp6I GTAC 1 cut(s) 751
CviAII CATG 3 cut(s) 145, 223, 433
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 1 cut(s) 389
DpnI GATC 4 cut(s) 258, 301, 419, 497
DpnII GATC 4 cut(s) 256, 299, 417, 495
DriI GACNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 2 cut(s) 210, 222
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 3 cut(s) 281, 476, 489
Eco57I CTGAAG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 476
EcoT14I CCWWGG 2 cut(s) 210, 222
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 2 cut(s) 210, 222
FaeI CATG 3 cut(s) 148, 226, 436
FaiI YATR 5 cut(s) 146, 224, 369, 434, 780
FaqI GGGAC 1 cut(s) 267
FatI CATG 3 cut(s) 144, 222, 432
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 337, 363, 540
FokI GGATG 3 cut(s) 66, 139, 467
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 3 cut(s) 337, 363, 540
GluI GCNGC 3 cut(s) 337, 363, 540
GsaI CCCAGC 1 cut(s) 533
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 7 cut(s) 26, 234, 243, 384, 437, 468, 698
HapII CCGG 6 cut(s) 279, 380, 470, 485, 499, 629
HgaI GACGC 2 cut(s) 382, 751
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 3 cut(s) 148, 226, 436
HincII GTYRAC 4 cut(s) 217, 229, 442, 462
HindII GTYRAC 4 cut(s) 217, 229, 442, 462
HinfI GANTC 2 cut(s) 404, 704
HpaII CCGG 6 cut(s) 279, 380, 470, 485, 499, 629
HphI GGTGA 6 cut(s) 133, 253, 265, 310, 560, 574
Hpy166II GTNNAC 5 cut(s) 217, 229, 376, 442, 462
Hpy188I TCNGA 2 cut(s) 590, 812
Hpy188III TCNNGA 2 cut(s) 415, 773
Hpy8I GTNNAC 5 cut(s) 217, 229, 376, 442, 462
Hpy99I CGWCG 3 cut(s) 164, 167, 398
HpyAV CCTTC 8 cut(s) 46, 65, 319, 325, 489, 514, 703, 727
HpyCH4III ACNGT 3 cut(s) 13, 139, 373
HpyCH4IV ACGT 2 cut(s) 429, 506
HpyCH4V TGCA 1 cut(s) 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 390, 662, 724
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 2 cut(s) 429, 506
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 3 cut(s) 148, 226, 436
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Kzo9I GATC 4 cut(s) 256, 299, 417, 495
LmnI GCTCC 4 cut(s) 38, 74, 526, 715
LweI GCATC 1 cut(s) 129
MaeII ACGT 2 cut(s) 429, 506
MaeIII GTNAC 2 cut(s) 139, 502
MalI GATC 4 cut(s) 258, 301, 419, 497
MboI GATC 4 cut(s) 256, 299, 417, 495
MboII GAAGA 2 cut(s) 172, 664
MhlI GDGCHC 2 cut(s) 171, 470
MluCI AATT 1 cut(s) 127
MlyI GAGTC 1 cut(s) 413
MroNI GCCGGC 1 cut(s) 628
MseI TTAA 4 cut(s) 41, 47, 567, 576
MspI CCGG 6 cut(s) 279, 380, 470, 485, 499, 629
MspR9I CCNGG 5 cut(s) 380, 381, 470, 486, 500
MvnI CGCG 2 cut(s) 452, 494
MwoI GCNNNNNNNGC 4 cut(s) 240, 390, 662, 724
NaeI GCCGGC 1 cut(s) 630
NciI CCSGG 5 cut(s) 380, 381, 470, 486, 500
NcoI CCATGG 1 cut(s) 222
NdeII GATC 4 cut(s) 256, 299, 417, 495
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 3 cut(s) 148, 226, 436
NlaIV GGNNCC 4 cut(s) 283, 468, 477, 490
NmuCI GTSAC 2 cut(s) 139, 502
NspV TTCGAA 1 cut(s) 707
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 435
PdiI GCCGGC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 704
PflFI GACNNNGTC 2 cut(s) 446, 761
PkrI GCNGC 3 cut(s) 338, 364, 541
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PpuMI RGGWCCY 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 476
PspFI CCCAGC 1 cut(s) 529
PspN4I GGNNCC 4 cut(s) 283, 468, 477, 490
PspOMI GGGCCC 1 cut(s) 466
PspPI GGNCC 6 cut(s) 281, 382, 466, 467, 476, 489
PspPPI RGGWCCY 1 cut(s) 476
PsyI GACNNNGTC 2 cut(s) 446, 761
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
SaqAI TTAA 4 cut(s) 41, 47, 567, 576
SatI GCNGC 3 cut(s) 337, 363, 540
Sau3AI GATC 4 cut(s) 256, 299, 417, 495
Sau96I GGNCC 6 cut(s) 281, 382, 466, 467, 476, 489
ScaI AGTACT 1 cut(s) 752
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 5 cut(s) 380, 381, 470, 486, 500
SduI GDGCHC 2 cut(s) 171, 470
SfaNI GCATC 1 cut(s) 129
SfiI GGCCNNNNNGGCC 1 cut(s) 240
SfuI TTCGAA 1 cut(s) 707
SinI GGWCC 3 cut(s) 281, 476, 489
SmaI CCCGGG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 1 cut(s) 127
SsiI CCGC 9 cut(s) 118, 276, 292, 337, 363, 452, 492, 539, 665
StyD4I CCNGG 5 cut(s) 378, 379, 468, 484, 498
StyI CCWWGG 2 cut(s) 210, 222
TaaI ACNGT 3 cut(s) 13, 139, 373
TaiI ACGT 2 cut(s) 432, 509
TaqI TCGA 5 cut(s) 165, 255, 650, 675, 707
TasI AATT 1 cut(s) 127
TatI WGTACW 1 cut(s) 750
TauI GCSGC 3 cut(s) 339, 365, 542
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 4 cut(s) 41, 47, 567, 576
Tru9I TTAA 4 cut(s) 41, 47, 567, 576
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 2 cut(s) 139, 502
Tsp45I GTSAC 2 cut(s) 139, 502
TspGWI ACGGA 2 cut(s) 148, 397
TspMI CCCGGG 1 cut(s) 379
TspRI CASTG 1 cut(s) 666
Tth111I GACNNNGTC 2 cut(s) 446, 761
VpaK11BI GGWCC 3 cut(s) 281, 476, 489
XagI CCTNNNNNAGG 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 379
ZraI GACGTC 1 cut(s) 430
ZrmI AGTACT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.