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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51050 |
| fragaria_vesca | FvH4_1g12400 FvH4_1g12400 |
| malus_domestica | MD02G1137100.v1.1 MD15G1250800.v1.1 |
| prunus_persica | Prupe.7G163500_v2.0.a1 Prupe.7G163500_v2.0.a1 |
| pyrus_communis | pycom02g10850 pycom15g22120 |
| rosa_chinensis | RchiOBHm_Chr2g0100261 |
| rosa_laevigata | RLG00000016950 |
| rosa_multiflora | Rmu_sc0002547.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00142440 |
| rosa_rugosa | Rorug02G0086900 |
| rosa_samantha | Rh2AG135900 Rh2BG139400 Rh2CG141200 Rh2DG141400 |
| rosa_wichuraiana | Rw2G010630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1070 |
| Acc36I | ACCTGC | 1 cut(s) | 2389 |
| AccB1I | GGYRCC | 2 cut(s) | 1204, 3603 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2236 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AccII | CGCG | 3 cut(s) | 77, 221, 223 |
| AccIII | TCCGGA | 1 cut(s) | 415 |
| AclWI | GGATC | 6 cut(s) | 793, 1902, 2606, 3390, 3403, 3820 |
| AcoI | YGGCCR | 6 cut(s) | 114, 188, 2029, 2352, 2736, 3595 |
| AcsI | RAATTY | 6 cut(s) | 943, 1046, 1395, 2322, 2692, 2973 |
| AcuI | CTGAAG | 8 cut(s) | 1502, 2055, 2078, 2564, 2877, 3806, 3948, 4009 |
| AcyI | GRCGYC | 2 cut(s) | 80, 2220 |
| AdeI | CACNNNGTG | 1 cut(s) | 1525 |
| AfaI | GTAC | 9 cut(s) | 550, 1037, 1086, 1238, 1383, 2139, 2808, 3137, 3444 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 119, 186, 1864, 2236, 2308, 2334, 2969, 3220, 3978 |
| AflII | CTTAAG | 1 cut(s) | 1556 |
| AflIII | ACRYGT | 2 cut(s) | 1117, 1816 |
| AhlI | ACTAGT | 1 cut(s) | 4033 |
| AjnI | CCWGG | 9 cut(s) | 1645, 2380, 2393, 2962, 3351, 3670, 3865, 4001, 4009 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 194, 226, 1170, 1202, 2010, 2042 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 693, 725 |
| Alw21I | GWGCWC | 5 cut(s) | 28, 48, 829, 2281, 3541 |
| Alw26I | GTCTC | 7 cut(s) | 198, 428, 550, 1004, 1676, 1961, 2788 |
| AlwI | GGATC | 6 cut(s) | 793, 1902, 2606, 3390, 3403, 3820 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2236, 2702 |
| Aor13HI | TCCGGA | 1 cut(s) | 415 |
| ApaI | GGGCCC | 2 cut(s) | 179, 4018 |
| ApoI | RAATTY | 6 cut(s) | 943, 1046, 1395, 2322, 2692, 2973 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1961, 1993 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2973, 3255, 3791 |
| AspLEI | GCGC | 2 cut(s) | 223, 3374 |
| AspS9I | GGNCC | 8 cut(s) | 175, 176, 1260, 1595, 3211, 3775, 4014, 4015 |
| AsuNHI | GCTAGC | 1 cut(s) | 1147 |
| AvaII | GGWCC | 3 cut(s) | 1595, 3211, 3775 |
| BaeGI | GKGCMC | 3 cut(s) | 179, 3687, 4018 |
| BalI | TGGCCA | 3 cut(s) | 2031, 2354, 3597 |
| BamHI | GGATCC | 1 cut(s) | 3395 |
| BanI | GGYRCC | 2 cut(s) | 1204, 3603 |
| BanII | GRGCYC | 7 cut(s) | 28, 48, 179, 829, 3541, 3951, 4018 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 592, 624 |
| BauI | CACGAG | 5 cut(s) | 27, 594, 2076, 2280, 3965 |
| BbsI | GAAGAC | 3 cut(s) | 738, 3302, 3936 |
| Bbv12I | GWGCWC | 5 cut(s) | 28, 48, 829, 2281, 3541 |
| BbvCI | CCTCAGC | 2 cut(s) | 1143, 2292 |
| BceAI | ACGGC | 4 cut(s) | 101, 175, 2197, 2203 |
| BciT130I | CCWGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| BcoDI | GTCTC | 7 cut(s) | 198, 428, 550, 1004, 1676, 1961, 2788 |
| BcuI | ACTAGT | 1 cut(s) | 4033 |
| BfmI | CTRYAG | 2 cut(s) | 1341, 1951 |
| BfoI | RGCGCY | 1 cut(s) | 3375 |
| BfrI | CTTAAG | 1 cut(s) | 1556 |
| BfuAI | ACCTGC | 1 cut(s) | 2389 |
| BglII | AGATCT | 1 cut(s) | 796 |
| BlpI | GCTNAGC | 2 cut(s) | 288, 3375 |
| BmcAI | AGTACT | 2 cut(s) | 550, 2808 |
| Bme1390I | CCNGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| Bme18I | GGWCC | 3 cut(s) | 1595, 3211, 3775 |
| BmgT120I | GGNCC | 8 cut(s) | 175, 176, 1260, 1595, 3211, 3775, 4014, 4015 |
| BmrFI | CCNGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| BmrI | ACTGGG | 3 cut(s) | 663, 3127, 3987 |
| BmtI | GCTAGC | 1 cut(s) | 1151 |
| BmuI | ACTGGG | 3 cut(s) | 663, 3127, 3987 |
| BpiI | GAAGAC | 3 cut(s) | 738, 3302, 3936 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2768, 2800 |
| BpmI | CTGGAG | 5 cut(s) | 360, 2258, 3729, 3858, 3888 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1143, 2292 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 288, 3375 |
| BpuEI | CTTGAG | 2 cut(s) | 344, 3911 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2448 |
| BsaHI | GRCGYC | 2 cut(s) | 80, 2220 |
| BsaI | GGTCTC | 1 cut(s) | 428 |
| BsaJI | CCNNGG | 8 cut(s) | 937, 1645, 1701, 2381, 2990, 3399, 3619, 4010 |
| BsaWI | WCCGGW | 3 cut(s) | 37, 415, 2357 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1820, 1850, 1859, 1889, 4073, 4103 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 119, 186, 1864, 2236, 2308, 2334, 2969, 3220, 3978 |
| Bse118I | RCCGGY | 3 cut(s) | 112, 158, 2738 |
| Bse1I | ACTGG | 5 cut(s) | 658, 746, 3094, 3133, 3982 |
| Bse3DI | GCAATG | 2 cut(s) | 282, 488 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2448 |
| BseAI | TCCGGA | 1 cut(s) | 415 |
| BseBI | CCWGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| BseDI | CCNNGG | 8 cut(s) | 937, 1645, 1701, 2381, 2990, 3399, 3619, 4010 |
| BseJI | GATNNNNATC | 1 cut(s) | 2448 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 119, 186, 1864, 2236, 2308, 2334, 2969, 3220, 3978 |
| BseMI | GCAATG | 2 cut(s) | 282, 488 |
| BseMII | CTCAG | 7 cut(s) | 279, 1054, 1157, 1687, 1979, 2283, 3366 |
| BseNI | ACTGG | 5 cut(s) | 658, 746, 3094, 3133, 3982 |
| BseRI | GAGGAG | 2 cut(s) | 1784, 1939 |
| BseSI | GKGCMC | 3 cut(s) | 179, 3687, 4018 |
| BseX3I | CGGCCG | 2 cut(s) | 114, 188 |
| BsgI | GTGCAG | 1 cut(s) | 1547 |
| Bsh1236I | CGCG | 3 cut(s) | 77, 221, 223 |
| Bsh1285I | CGRYCG | 4 cut(s) | 117, 191, 2150, 2166 |
| BshNI | GGYRCC | 2 cut(s) | 1204, 3603 |
| BsiEI | CGRYCG | 4 cut(s) | 117, 191, 2150, 2166 |
| BsiHKAI | GWGCWC | 5 cut(s) | 28, 48, 829, 2281, 3541 |
| BsiSI | CCGG | 8 cut(s) | 38, 113, 159, 416, 2309, 2331, 2358, 2739 |
| BslFI | GGGAC | 3 cut(s) | 1608, 3197, 3761 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 119, 186, 1864, 2236, 2308, 2334, 2969, 3220, 3978 |
| BsmAI | GTCTC | 7 cut(s) | 198, 428, 550, 1004, 1676, 1961, 2788 |
| BsmBI | CGTCTC | 2 cut(s) | 198, 1004 |
| BsmFI | GGGAC | 3 cut(s) | 1608, 3197, 3761 |
| BsmI | GAATGC | 1 cut(s) | 3791 |
| Bso31I | GGTCTC | 1 cut(s) | 428 |
| Bsp120I | GGGCCC | 2 cut(s) | 175, 4014 |
| Bsp1286I | GDGCHC | 9 cut(s) | 28, 48, 179, 829, 2281, 3541, 3687, 3951, 4018 |
| Bsp13I | TCCGGA | 1 cut(s) | 415 |
| Bsp1407I | TGTACA | 2 cut(s) | 1084, 1381 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 288, 3375 |
| Bsp19I | CCATGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| BspCNI | CTCAG | 7 cut(s) | 280, 1053, 1156, 1686, 1978, 2284, 3367 |
| BspEI | TCCGGA | 1 cut(s) | 415 |
| BspFNI | CGCG | 3 cut(s) | 77, 221, 223 |
| BspHI | TCATGA | 2 cut(s) | 1351, 1800 |
| BspMI | ACCTGC | 1 cut(s) | 2389 |
| BspOI | GCTAGC | 1 cut(s) | 1151 |
| BspPI | GGATC | 6 cut(s) | 793, 1902, 2606, 3390, 3403, 3820 |
| BspT107I | GGYRCC | 2 cut(s) | 1204, 3603 |
| BspTI | CTTAAG | 1 cut(s) | 1556 |
| BspTNI | GGTCTC | 1 cut(s) | 428 |
| BsrDI | GCAATG | 2 cut(s) | 282, 488 |
| BsrFI | RCCGGY | 3 cut(s) | 112, 158, 2738 |
| BsrGI | TGTACA | 2 cut(s) | 1084, 1381 |
| BsrI | ACTGG | 5 cut(s) | 658, 746, 3094, 3133, 3982 |
| BssAI | RCCGGY | 3 cut(s) | 112, 158, 2738 |
| BssECI | CCNNGG | 8 cut(s) | 937, 1645, 1701, 2381, 2990, 3399, 3619, 4010 |
| BssNI | GRCGYC | 2 cut(s) | 80, 2220 |
| BssSI | CACGAG | 5 cut(s) | 27, 594, 2076, 2280, 3965 |
| BssT1I | CCWWGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| Bst2BI | CACGAG | 5 cut(s) | 27, 594, 2076, 2280, 3965 |
| Bst2UI | CCWGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| Bst4CI | ACNGT | 9 cut(s) | 810, 918, 970, 1342, 2704, 2907, 2954, 3385, 3689 |
| Bst6I | CTCTTC | 3 cut(s) | 1802, 2074, 4025 |
| BstACI | GRCGYC | 2 cut(s) | 80, 2220 |
| BstAFI | CTTAAG | 1 cut(s) | 1556 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2729, 3282 |
| BstAUI | TGTACA | 2 cut(s) | 1084, 1381 |
| BstC8I | GCNNGC | 8 cut(s) | 114, 160, 1149, 1422, 2336, 2340, 3287, 3677 |
| BstDSI | CCRYGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| BstEII | GGTNACC | 1 cut(s) | 1273 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1862, 2332 |
| BstFNI | CGCG | 3 cut(s) | 77, 221, 223 |
| BstH2I | RGCGCY | 1 cut(s) | 3375 |
| BstHHI | GCGC | 2 cut(s) | 223, 3374 |
| BstMAI | GTCTC | 7 cut(s) | 198, 428, 550, 1004, 1676, 1961, 2788 |
| BstMCI | CGRYCG | 4 cut(s) | 117, 191, 2150, 2166 |
| BstNI | CCWGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| BstNSI | RCATGY | 4 cut(s) | 1121, 1762, 1820, 1949 |
| BstPI | GGTNACC | 1 cut(s) | 1273 |
| BstSCI | CCNGG | 9 cut(s) | 1645, 2380, 2393, 2962, 3351, 3670, 3865, 4001, 4009 |
| BstSFI | CTRYAG | 2 cut(s) | 1341, 1951 |
| BstSLI | GKGCMC | 3 cut(s) | 179, 3687, 4018 |
| BstUI | CGCG | 3 cut(s) | 77, 221, 223 |
| BstV2I | GAAGAC | 3 cut(s) | 738, 3302, 3936 |
| BstX2I | RGATCY | 3 cut(s) | 796, 2611, 3395 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 620, 3140, 3359 |
| BstYI | RGATCY | 3 cut(s) | 796, 2611, 3395 |
| BstZI | CGGCCG | 2 cut(s) | 114, 188 |
| BtgI | CCRYGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| BtgZI | GCGATG | 1 cut(s) | 2363 |
| BtsIMutI | CAGTG | 5 cut(s) | 346, 1179, 1338, 3782, 3951 |
| BveI | ACCTGC | 1 cut(s) | 2389 |
| Cac8I | GCNNGC | 8 cut(s) | 114, 160, 1149, 1422, 2336, 2340, 3287, 3677 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2236, 2702 |
| CciI | TCATGA | 2 cut(s) | 1351, 1800 |
| CfoI | GCGC | 2 cut(s) | 223, 3374 |
| Cfr10I | RCCGGY | 3 cut(s) | 112, 158, 2738 |
| Cfr13I | GGNCC | 8 cut(s) | 175, 176, 1260, 1595, 3211, 3775, 4014, 4015 |
| CseI | GACGC | 2 cut(s) | 88, 2228 |
| Csp6I | GTAC | 9 cut(s) | 549, 1036, 1085, 1237, 1382, 2138, 2807, 3136, 3443 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3188, 3223 |
| CviQI | GTAC | 9 cut(s) | 549, 1036, 1085, 1237, 1382, 2138, 2807, 3136, 3443 |
| DraIII | CACNNNGTG | 1 cut(s) | 1525 |
| EaeI | YGGCCR | 6 cut(s) | 114, 188, 2029, 2352, 2736, 3595 |
| EagI | CGGCCG | 2 cut(s) | 114, 188 |
| Eam1104I | CTCTTC | 3 cut(s) | 1802, 2074, 4025 |
| EarI | CTCTTC | 3 cut(s) | 1802, 2074, 4025 |
| EciI | GGCGGA | 1 cut(s) | 2592 |
| Ecl136II | GAGCTC | 4 cut(s) | 26, 46, 827, 3539 |
| EclXI | CGGCCG | 2 cut(s) | 114, 188 |
| Eco130I | CCWWGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| Eco147I | AGGCCT | 1 cut(s) | 1141 |
| Eco24I | GRGCYC | 7 cut(s) | 28, 48, 179, 829, 3541, 3951, 4018 |
| Eco31I | GGTCTC | 1 cut(s) | 428 |
| Eco32I | GATATC | 1 cut(s) | 3861 |
| Eco47I | GGWCC | 3 cut(s) | 1595, 3211, 3775 |
| Eco52I | CGGCCG | 2 cut(s) | 114, 188 |
| Eco53kI | GAGCTC | 4 cut(s) | 26, 46, 827, 3539 |
| Eco57I | CTGAAG | 8 cut(s) | 1502, 2055, 2078, 2564, 2877, 3806, 3948, 4009 |
| Eco91I | GGTNACC | 1 cut(s) | 1273 |
| EcoICRI | GAGCTC | 4 cut(s) | 26, 46, 827, 3539 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1862, 2332 |
| EcoO109I | RGGNCCY | 5 cut(s) | 176, 1260, 3211, 4014, 4015 |
| EcoO65I | GGTNACC | 1 cut(s) | 1273 |
| EcoRI | GAATTC | 2 cut(s) | 1395, 2973 |
| EcoRII | CCWGG | 9 cut(s) | 1645, 2380, 2393, 2962, 3351, 3670, 3865, 4001, 4009 |
| EcoRV | GATATC | 1 cut(s) | 3861 |
| EcoT14I | CCWWGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| EcoT22I | ATGCAT | 2 cut(s) | 437, 2902 |
| EcoT38I | GRGCYC | 7 cut(s) | 28, 48, 179, 829, 3541, 3951, 4018 |
| ErhI | CCWWGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| Esp3I | CGTCTC | 2 cut(s) | 198, 1004 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1424, 1456, 2187, 2219, 3294, 3326, 3813, 3845 |
| FaqI | GGGAC | 3 cut(s) | 1608, 3197, 3761 |
| FauI | CCCGC | 3 cut(s) | 111, 2166, 3742 |
| FauNDI | CATATG | 1 cut(s) | 1021 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| FriOI | GRGCYC | 7 cut(s) | 28, 48, 179, 829, 3541, 3951, 4018 |
| GlaI | GCGC | 2 cut(s) | 222, 3373 |
| GsuI | CTGGAG | 5 cut(s) | 360, 2258, 3729, 3858, 3888 |
| HaeII | RGCGCY | 1 cut(s) | 3375 |
| HapII | CCGG | 8 cut(s) | 38, 113, 159, 416, 2309, 2331, 2358, 2739 |
| HgaI | GACGC | 2 cut(s) | 88, 2228 |
| HhaI | GCGC | 2 cut(s) | 223, 3374 |
| Hin1I | GRCGYC | 2 cut(s) | 80, 2220 |
| Hin6I | GCGC | 2 cut(s) | 221, 3372 |
| HinP1I | GCGC | 2 cut(s) | 221, 3372 |
| HincII | GTYRAC | 3 cut(s) | 6, 973, 3714 |
| HindII | GTYRAC | 3 cut(s) | 6, 973, 3714 |
| HindIII | AAGCTT | 1 cut(s) | 3287 |
| HpaI | GTTAAC | 1 cut(s) | 3714 |
| HpaII | CCGG | 8 cut(s) | 38, 113, 159, 416, 2309, 2331, 2358, 2739 |
| Hpy166II | GTNNAC | 8 cut(s) | 6, 973, 1237, 1336, 1721, 3259, 3443, 3714 |
| Hpy8I | GTNNAC | 8 cut(s) | 6, 973, 1237, 1336, 1721, 3259, 3443, 3714 |
| HpyCH4III | ACNGT | 9 cut(s) | 810, 918, 970, 1342, 2704, 2907, 2954, 3385, 3689 |
| HpyCH4IV | ACGT | 5 cut(s) | 87, 638, 1573, 2417, 3412 |
| HpySE526I | ACGT | 5 cut(s) | 87, 638, 1573, 2417, 3412 |
| Hsp92I | GRCGYC | 2 cut(s) | 80, 2220 |
| HspAI | GCGC | 2 cut(s) | 221, 3372 |
| KflI | GGGWCCC | 1 cut(s) | 3211 |
| Kpn2I | TCCGGA | 1 cut(s) | 415 |
| KroI | GCCGGC | 2 cut(s) | 112, 158 |
| KroNI | GCCGGC | 2 cut(s) | 114, 160 |
| KspAI | GTTAAC | 1 cut(s) | 3714 |
| LmnI | GCTCC | 8 cut(s) | 23, 40, 43, 278, 824, 1867, 2239, 3544 |
| MaeII | ACGT | 5 cut(s) | 87, 638, 1573, 2417, 3412 |
| MaeIII | GTNAC | 9 cut(s) | 88, 1273, 1517, 1994, 2413, 3085, 3655, 3967, 4072 |
| MfeI | CAATTG | 1 cut(s) | 209 |
| MflI | RGATCY | 3 cut(s) | 796, 2611, 3395 |
| MhlI | GDGCHC | 9 cut(s) | 28, 48, 179, 829, 2281, 3541, 3687, 3951, 4018 |
| MlsI | TGGCCA | 3 cut(s) | 2031, 2354, 3597 |
| MluNI | TGGCCA | 3 cut(s) | 2031, 2354, 3597 |
| MlyI | GAGTC | 6 cut(s) | 234, 1726, 2790, 3087, 3345, 4071 |
| MmeI | TCCRAC | 3 cut(s) | 276, 2143, 3529 |
| Mox20I | TGGCCA | 3 cut(s) | 2031, 2354, 3597 |
| Mph1103I | ATGCAT | 2 cut(s) | 437, 2902 |
| MroI | TCCGGA | 1 cut(s) | 415 |
| MroNI | GCCGGC | 2 cut(s) | 112, 158 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2973, 3255, 3791 |
| MscI | TGGCCA | 3 cut(s) | 2031, 2354, 3597 |
| MslI | CAYNNNNRTG | 6 cut(s) | 249, 2037, 3318, 3404, 3624, 4052 |
| Msp20I | TGGCCA | 3 cut(s) | 2031, 2354, 3597 |
| MspA1I | CMGCKG | 3 cut(s) | 1280, 3749, 3836 |
| MspCI | CTTAAG | 1 cut(s) | 1556 |
| MspI | CCGG | 8 cut(s) | 38, 113, 159, 416, 2309, 2331, 2358, 2739 |
| MspR9I | CCNGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| MunI | CAATTG | 1 cut(s) | 209 |
| Mva1269I | GAATGC | 1 cut(s) | 3791 |
| MvaI | CCWGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| MvnI | CGCG | 3 cut(s) | 77, 221, 223 |
| NaeI | GCCGGC | 2 cut(s) | 114, 160 |
| NcoI | CCATGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| NdeI | CATATG | 1 cut(s) | 1021 |
| NgoMIV | GCCGGC | 2 cut(s) | 112, 158 |
| NheI | GCTAGC | 1 cut(s) | 1147 |
| NmuCI | GTSAC | 7 cut(s) | 88, 1273, 1517, 1994, 3085, 3967, 4072 |
| NsiI | ATGCAT | 2 cut(s) | 437, 2902 |
| NspI | RCATGY | 4 cut(s) | 1121, 1762, 1820, 1949 |
| PagI | TCATGA | 2 cut(s) | 1351, 1800 |
| PceI | AGGCCT | 1 cut(s) | 1141 |
| PciI | ACATGT | 2 cut(s) | 1117, 1816 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 54, 592, 2214 |
| PctI | GAATGC | 1 cut(s) | 3791 |
| PdiI | GCCGGC | 2 cut(s) | 114, 160 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2973, 3255, 3791 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2236 |
| PfoI | TCCNGGA | 1 cut(s) | 2962 |
| Ple19I | CGATCG | 1 cut(s) | 2166 |
| PleI | GAGTC | 6 cut(s) | 233, 1725, 2789, 3087, 3344, 4070 |
| PpsI | GAGTC | 6 cut(s) | 233, 1725, 2789, 3087, 3344, 4070 |
| PpuMI | RGGWCCY | 1 cut(s) | 3211 |
| PscI | ACATGT | 2 cut(s) | 1117, 1816 |
| PsiI | TTATAA | 1 cut(s) | 1070 |
| Psp124BI | GAGCTC | 4 cut(s) | 28, 48, 829, 3541 |
| Psp5II | RGGWCCY | 1 cut(s) | 3211 |
| Psp6I | CCWGG | 9 cut(s) | 1645, 2380, 2393, 2962, 3351, 3670, 3865, 4001, 4009 |
| PspEI | GGTNACC | 1 cut(s) | 1273 |
| PspGI | CCWGG | 9 cut(s) | 1645, 2380, 2393, 2962, 3351, 3670, 3865, 4001, 4009 |
| PspOMI | GGGCCC | 2 cut(s) | 175, 4014 |
| PspPI | GGNCC | 8 cut(s) | 175, 176, 1260, 1595, 3211, 3775, 4014, 4015 |
| PspPPI | RGGWCCY | 1 cut(s) | 3211 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2236, 2702 |
| PsuI | RGATCY | 3 cut(s) | 796, 2611, 3395 |
| PvuI | CGATCG | 1 cut(s) | 2166 |
| PvuII | CAGCTG | 1 cut(s) | 3836 |
| RsaI | GTAC | 9 cut(s) | 550, 1037, 1086, 1238, 1383, 2139, 2808, 3137, 3444 |
| RsaNI | GTAC | 9 cut(s) | 549, 1036, 1085, 1237, 1382, 2138, 2807, 3136, 3443 |
| RseI | CAYNNNNRTG | 6 cut(s) | 249, 2037, 3318, 3404, 3624, 4052 |
| SacI | GAGCTC | 4 cut(s) | 28, 48, 829, 3541 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| Sau96I | GGNCC | 8 cut(s) | 175, 176, 1260, 1595, 3211, 3775, 4014, 4015 |
| ScaI | AGTACT | 2 cut(s) | 550, 2808 |
| SchI | GAGTC | 6 cut(s) | 234, 1726, 2790, 3087, 3345, 4071 |
| ScrFI | CCNGG | 9 cut(s) | 1647, 2382, 2395, 2964, 3353, 3672, 3867, 4003, 4011 |
| SduI | GDGCHC | 9 cut(s) | 28, 48, 179, 829, 2281, 3541, 3687, 3951, 4018 |
| SfcI | CTRYAG | 2 cut(s) | 1341, 1951 |
| SinI | GGWCC | 3 cut(s) | 1595, 3211, 3775 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 249, 2037, 3318, 3404, 3624, 4052 |
| SmlI | CTYRAG | 3 cut(s) | 359, 1556, 3890 |
| SmoI | CTYRAG | 3 cut(s) | 359, 1556, 3890 |
| SpeI | ACTAGT | 1 cut(s) | 4033 |
| SseBI | AGGCCT | 1 cut(s) | 1141 |
| SstI | GAGCTC | 4 cut(s) | 28, 48, 829, 3541 |
| StuI | AGGCCT | 1 cut(s) | 1141 |
| StyD4I | CCNGG | 9 cut(s) | 1645, 2380, 2393, 2962, 3351, 3670, 3865, 4001, 4009 |
| StyI | CCWWGG | 4 cut(s) | 937, 1701, 3399, 3619 |
| TaaI | ACNGT | 9 cut(s) | 810, 918, 970, 1342, 2704, 2907, 2954, 3385, 3689 |
| TaiI | ACGT | 5 cut(s) | 90, 641, 1576, 2420, 3415 |
| TaqI | TCGA | 9 cut(s) | 5, 17, 48, 1292, 1614, 2442, 2525, 3096, 3535 |
| TatI | WGTACW | 4 cut(s) | 548, 1084, 1381, 2806 |
| TauI | GCSGC | 7 cut(s) | 35, 74, 77, 109, 112, 190, 3005 |
| TscAI | CASTG | 5 cut(s) | 346, 1179, 1345, 3789, 3958 |
| TseFI | GTSAC | 7 cut(s) | 88, 1273, 1517, 1994, 3085, 3967, 4072 |
| Tsp45I | GTSAC | 7 cut(s) | 88, 1273, 1517, 1994, 3085, 3967, 4072 |
| TspGWI | ACGGA | 2 cut(s) | 661, 1454 |
| TspRI | CASTG | 5 cut(s) | 346, 1179, 1345, 3789, 3958 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2236 |
| Vha464I | CTTAAG | 1 cut(s) | 1556 |
| VpaK11BI | GGWCC | 3 cut(s) | 1595, 3211, 3775 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1862, 2332 |
| XapI | RAATTY | 6 cut(s) | 943, 1046, 1395, 2322, 2692, 2973 |
| XbaI | TCTAGA | 3 cut(s) | 1912, 2795, 3521 |
| XceI | RCATGY | 4 cut(s) | 1121, 1762, 1820, 1949 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2401, 3359 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2973, 3255, 3791 |
| ZrmI | AGTACT | 2 cut(s) | 550, 2808 |
| Zsp2I | ATGCAT | 2 cut(s) | 437, 2902 |