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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51050 |
| fragaria_vesca | FvH4_1g12400 FvH4_1g12400 |
| malus_domestica | MD02G1137100.v1.1 MD15G1250800.v1.1 |
| prunus_persica | Prupe.7G163500_v2.0.a1 Prupe.7G163500_v2.0.a1 |
| pyrus_communis | pycom02g10850 pycom15g22120 |
| rosa_chinensis | RchiOBHm_Chr2g0100261 |
| rosa_laevigata | RLG00000016950 |
| rosa_multiflora | Rmu_sc0002547.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00142440 |
| rosa_rugosa | Rorug02G0086900 |
| rosa_samantha | Rh2AG135900 Rh2BG139400 Rh2CG141200 Rh2DG141400 |
| rosa_wichuraiana | Rw2G010630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 40 |
| AccB1I | GGYRCC | 1 cut(s) | 1224 |
| AciI | CCGC | 5 cut(s) | 143, 228, 470, 1228, 1370 |
| AclWI | GGATC | 4 cut(s) | 257, 1011, 1024, 1441 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1216 |
| AcsI | RAATTY | 3 cut(s) | 343, 524, 539 |
| AcuI | CTGAAG | 4 cut(s) | 215, 432, 708, 1427 |
| AfaI | GTAC | 2 cut(s) | 758, 1065 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 841, 1599 |
| AgsI | TTSAA | 7 cut(s) | 272, 437, 505, 604, 643, 732, 920 |
| AhlI | ACTAGT | 1 cut(s) | 1654 |
| AjnI | CCWGG | 9 cut(s) | 31, 44, 517, 703, 972, 1291, 1486, 1622, 1630 |
| Alw21I | GWGCWC | 1 cut(s) | 1162 |
| AlwI | GGATC | 4 cut(s) | 257, 1011, 1024, 1441 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 353 |
| AoxI | GGCC | 4 cut(s) | 3, 29, 1216, 1635 |
| ApaI | GGGCCC | 1 cut(s) | 1639 |
| ApeKI | GCWGC | 5 cut(s) | 244, 472, 749, 1385, 1454 |
| ApoI | RAATTY | 3 cut(s) | 343, 524, 539 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 876, 1412 |
| AspLEI | GCGC | 1 cut(s) | 995 |
| AspS9I | GGNCC | 4 cut(s) | 832, 1396, 1635, 1636 |
| AsuHPI | GGTGA | 8 cut(s) | 146, 229, 962, 1256, 1281, 1283, 1476, 1687 |
| AvaII | GGWCC | 2 cut(s) | 832, 1396 |
| BaeGI | GKGCMC | 2 cut(s) | 1308, 1639 |
| BalI | TGGCCA | 2 cut(s) | 5, 1218 |
| BamHI | GGATCC | 1 cut(s) | 1016 |
| BanI | GGYRCC | 1 cut(s) | 1224 |
| BanII | GRGCYC | 3 cut(s) | 1162, 1572, 1639 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 577, 609 |
| BauI | CACGAG | 1 cut(s) | 1586 |
| BbsI | GAAGAC | 1 cut(s) | 923 |
| Bbv12I | GWGCWC | 1 cut(s) | 1162 |
| BbvCI | CCTCAGC | 1 cut(s) | 1548 |
| BbvI | GCAGC | 5 cut(s) | 256, 484, 736, 1372, 1466 |
| BciT130I | CCWGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| BcuI | ACTAGT | 1 cut(s) | 1654 |
| BfaI | CTAG | 4 cut(s) | 417, 962, 1143, 1655 |
| BfoI | RGCGCY | 1 cut(s) | 996 |
| BfuAI | ACCTGC | 1 cut(s) | 40 |
| BisI | GCNGC | 5 cut(s) | 245, 473, 750, 1386, 1455 |
| BlpI | GCTNAGC | 1 cut(s) | 996 |
| BlsI | GCNGC | 5 cut(s) | 246, 474, 751, 1387, 1456 |
| Bme1390I | CCNGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| Bme18I | GGWCC | 2 cut(s) | 832, 1396 |
| BmgT120I | GGNCC | 4 cut(s) | 832, 1396, 1635, 1636 |
| BmiI | GGNNCC | 7 cut(s) | 833, 834, 1018, 1226, 1398, 1636, 1637 |
| BmrFI | CCNGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| BmrI | ACTGGG | 2 cut(s) | 748, 1608 |
| BmsI | GCATC | 5 cut(s) | 344, 442, 464, 896, 1336 |
| BmuI | ACTGGG | 2 cut(s) | 748, 1608 |
| BpiI | GAAGAC | 1 cut(s) | 923 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1541, 1573 |
| BpmI | CTGGAG | 3 cut(s) | 1350, 1479, 1509 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1548 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 996 |
| BpuEI | CTTGAG | 1 cut(s) | 1532 |
| BsaBI | GATNNNNATC | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 5 cut(s) | 32, 556, 1020, 1240, 1631 |
| BsaWI | WCCGGW | 1 cut(s) | 8 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1694, 1724 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 841, 1599 |
| Bse118I | RCCGGY | 1 cut(s) | 389 |
| Bse1I | ACTGG | 2 cut(s) | 754, 1603 |
| Bse8I | GATNNNNATC | 1 cut(s) | 99 |
| BseBI | CCWGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| BseDI | CCNNGG | 5 cut(s) | 32, 556, 1020, 1240, 1631 |
| BseJI | GATNNNNATC | 1 cut(s) | 99 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 841, 1599 |
| BseMII | CTCAG | 2 cut(s) | 987, 1539 |
| BseNI | ACTGG | 2 cut(s) | 754, 1603 |
| BseSI | GKGCMC | 2 cut(s) | 1308, 1639 |
| BseXI | GCAGC | 5 cut(s) | 256, 484, 736, 1372, 1466 |
| BshFI | GGCC | 4 cut(s) | 5, 31, 1218, 1637 |
| BshNI | GGYRCC | 1 cut(s) | 1224 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1162 |
| BsiSI | CCGG | 2 cut(s) | 9, 390 |
| BslFI | GGGAC | 2 cut(s) | 818, 1382 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 841, 1599 |
| BsmFI | GGGAC | 2 cut(s) | 818, 1382 |
| BsmI | GAATGC | 1 cut(s) | 1412 |
| BsnI | GGCC | 4 cut(s) | 5, 31, 1218, 1637 |
| Bsp120I | GGGCCC | 1 cut(s) | 1635 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1162, 1308, 1572, 1639 |
| Bsp143I | GATC | 4 cut(s) | 262, 964, 1016, 1446 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 996 |
| Bsp19I | CCATGG | 2 cut(s) | 1020, 1240 |
| BspACI | CCGC | 5 cut(s) | 143, 228, 470, 1228, 1370 |
| BspANI | GGCC | 4 cut(s) | 5, 31, 1218, 1637 |
| BspCNI | CTCAG | 2 cut(s) | 988, 1540 |
| BspLI | GGNNCC | 7 cut(s) | 833, 834, 1018, 1226, 1398, 1636, 1637 |
| BspMI | ACCTGC | 1 cut(s) | 40 |
| BspPI | GGATC | 4 cut(s) | 257, 1011, 1024, 1441 |
| BspT107I | GGYRCC | 1 cut(s) | 1224 |
| BsrFI | RCCGGY | 1 cut(s) | 389 |
| BsrI | ACTGG | 2 cut(s) | 754, 1603 |
| BssAI | RCCGGY | 1 cut(s) | 389 |
| BssECI | CCNNGG | 5 cut(s) | 32, 556, 1020, 1240, 1631 |
| BssMI | GATC | 4 cut(s) | 262, 964, 1016, 1446 |
| BssSI | CACGAG | 1 cut(s) | 1586 |
| BssT1I | CCWWGG | 2 cut(s) | 1020, 1240 |
| Bst2BI | CACGAG | 1 cut(s) | 1586 |
| Bst2UI | CCWGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| Bst4CI | ACNGT | 5 cut(s) | 355, 462, 509, 1006, 1310 |
| Bst6I | CTCTTC | 1 cut(s) | 580 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 380, 903 |
| BstC8I | GCNNGC | 2 cut(s) | 908, 1298 |
| BstDEI | CTNAG | 4 cut(s) | 259, 883, 996, 1548 |
| BstDSI | CCRYGG | 2 cut(s) | 1020, 1240 |
| BstH2I | RGCGCY | 1 cut(s) | 996 |
| BstHHI | GCGC | 1 cut(s) | 995 |
| BstKTI | GATC | 4 cut(s) | 265, 967, 1019, 1449 |
| BstMBI | GATC | 4 cut(s) | 262, 964, 1016, 1446 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 380, 758, 767, 903, 1236, 1544 |
| BstNI | CCWGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| BstNSI | RCATGY | 1 cut(s) | 534 |
| BstSCI | CCNGG | 9 cut(s) | 31, 44, 517, 703, 972, 1291, 1486, 1622, 1630 |
| BstSLI | GKGCMC | 2 cut(s) | 1308, 1639 |
| BstV1I | GCAGC | 5 cut(s) | 256, 484, 736, 1372, 1466 |
| BstV2I | GAAGAC | 1 cut(s) | 923 |
| BstX2I | RGATCY | 2 cut(s) | 262, 1016 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 576, 761, 980 |
| BstYI | RGATCY | 2 cut(s) | 262, 1016 |
| BsuRI | GGCC | 4 cut(s) | 5, 31, 1218, 1637 |
| BtgI | CCRYGG | 2 cut(s) | 1020, 1240 |
| BtsIMutI | CAGTG | 2 cut(s) | 1403, 1572 |
| BveI | ACCTGC | 1 cut(s) | 40 |
| Cac8I | GCNNGC | 2 cut(s) | 908, 1298 |
| CaiI | CAGNNNCTG | 1 cut(s) | 353 |
| CfoI | GCGC | 1 cut(s) | 995 |
| Cfr10I | RCCGGY | 1 cut(s) | 389 |
| Cfr13I | GGNCC | 4 cut(s) | 832, 1396, 1635, 1636 |
| Csp6I | GTAC | 2 cut(s) | 757, 1064 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 809, 844 |
| CviQI | GTAC | 2 cut(s) | 757, 1064 |
| DdeI | CTNAG | 4 cut(s) | 259, 883, 996, 1548 |
| DpnI | GATC | 4 cut(s) | 264, 966, 1018, 1448 |
| DpnII | GATC | 4 cut(s) | 262, 964, 1016, 1446 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1216 |
| Eam1104I | CTCTTC | 1 cut(s) | 580 |
| EarI | CTCTTC | 1 cut(s) | 580 |
| EciI | GGCGGA | 1 cut(s) | 243 |
| Ecl136II | GAGCTC | 1 cut(s) | 1160 |
| Eco130I | CCWWGG | 2 cut(s) | 1020, 1240 |
| Eco24I | GRGCYC | 3 cut(s) | 1162, 1572, 1639 |
| Eco32I | GATATC | 1 cut(s) | 1482 |
| Eco47I | GGWCC | 2 cut(s) | 832, 1396 |
| Eco53kI | GAGCTC | 1 cut(s) | 1160 |
| Eco57I | CTGAAG | 4 cut(s) | 215, 432, 708, 1427 |
| EcoICRI | GAGCTC | 1 cut(s) | 1160 |
| EcoO109I | RGGNCCY | 3 cut(s) | 832, 1635, 1636 |
| EcoRI | GAATTC | 1 cut(s) | 539 |
| EcoRII | CCWGG | 9 cut(s) | 31, 44, 517, 703, 972, 1291, 1486, 1622, 1630 |
| EcoRV | GATATC | 1 cut(s) | 1482 |
| EcoT14I | CCWWGG | 2 cut(s) | 1020, 1240 |
| EcoT22I | ATGCAT | 1 cut(s) | 457 |
| EcoT38I | GRGCYC | 3 cut(s) | 1162, 1572, 1639 |
| ErhI | CCWWGG | 2 cut(s) | 1020, 1240 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 915, 947, 1434, 1466 |
| FaqI | GGGAC | 2 cut(s) | 818, 1382 |
| FauI | CCCGC | 1 cut(s) | 1363 |
| Fnu4HI | GCNGC | 5 cut(s) | 245, 473, 750, 1386, 1455 |
| FriOI | GRGCYC | 3 cut(s) | 1162, 1572, 1639 |
| Fsp4HI | GCNGC | 5 cut(s) | 245, 473, 750, 1386, 1455 |
| FspBI | CTAG | 4 cut(s) | 417, 962, 1143, 1655 |
| GlaI | GCGC | 1 cut(s) | 994 |
| GluI | GCNGC | 5 cut(s) | 245, 473, 750, 1386, 1455 |
| GsuI | CTGGAG | 3 cut(s) | 1350, 1479, 1509 |
| HaeII | RGCGCY | 1 cut(s) | 996 |
| HaeIII | GGCC | 4 cut(s) | 5, 31, 1218, 1637 |
| HapII | CCGG | 2 cut(s) | 9, 390 |
| HhaI | GCGC | 1 cut(s) | 995 |
| Hin6I | GCGC | 1 cut(s) | 993 |
| HinP1I | GCGC | 1 cut(s) | 993 |
| HincII | GTYRAC | 1 cut(s) | 1335 |
| HindII | GTYRAC | 1 cut(s) | 1335 |
| HindIII | AAGCTT | 1 cut(s) | 908 |
| HinfI | GANTC | 6 cut(s) | 95, 206, 466, 548, 713, 1683 |
| HpaI | GTTAAC | 1 cut(s) | 1335 |
| HpaII | CCGG | 2 cut(s) | 9, 390 |
| HphI | GGTGA | 8 cut(s) | 146, 229, 962, 1256, 1281, 1283, 1476, 1687 |
| Hpy166II | GTNNAC | 3 cut(s) | 880, 1064, 1335 |
| Hpy188I | TCNGA | 7 cut(s) | 195, 340, 451, 545, 560, 621, 1620 |
| Hpy188III | TCNNGA | 9 cut(s) | 210, 348, 920, 962, 1143, 1163, 1439, 1477, 1588 |
| Hpy8I | GTNNAC | 3 cut(s) | 880, 1064, 1335 |
| Hpy99I | CGWCG | 2 cut(s) | 73, 1568 |
| HpyAV | CCTTC | 3 cut(s) | 225, 857, 1402 |
| HpyCH4III | ACNGT | 5 cut(s) | 355, 462, 509, 1006, 1310 |
| HpyCH4IV | ACGT | 2 cut(s) | 68, 1033 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 380, 758, 767, 903, 1236, 1544 |
| HpyF3I | CTNAG | 4 cut(s) | 259, 883, 996, 1548 |
| HpySE526I | ACGT | 2 cut(s) | 68, 1033 |
| HspAI | GCGC | 1 cut(s) | 993 |
| KflI | GGGWCCC | 1 cut(s) | 832 |
| KspAI | GTTAAC | 1 cut(s) | 1335 |
| Kzo9I | GATC | 4 cut(s) | 262, 964, 1016, 1446 |
| LmnI | GCTCC | 1 cut(s) | 1165 |
| Lsp1109I | GCAGC | 5 cut(s) | 256, 484, 736, 1372, 1466 |
| LweI | GCATC | 5 cut(s) | 344, 442, 464, 896, 1336 |
| MaeI | CTAG | 4 cut(s) | 417, 962, 1143, 1655 |
| MaeII | ACGT | 2 cut(s) | 68, 1033 |
| MaeIII | GTNAC | 4 cut(s) | 64, 1276, 1588, 1693 |
| MalI | GATC | 4 cut(s) | 264, 966, 1018, 1448 |
| MboI | GATC | 4 cut(s) | 262, 964, 1016, 1446 |
| MflI | RGATCY | 2 cut(s) | 262, 1016 |
| MhlI | GDGCHC | 4 cut(s) | 1162, 1308, 1572, 1639 |
| MlsI | TGGCCA | 2 cut(s) | 5, 1218 |
| MluNI | TGGCCA | 2 cut(s) | 5, 1218 |
| MlyI | GAGTC | 2 cut(s) | 707, 1692 |
| MmeI | TCCRAC | 1 cut(s) | 1150 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 1218 |
| Mph1103I | ATGCAT | 1 cut(s) | 457 |
| MroXI | GAANNNNTTC | 2 cut(s) | 876, 1412 |
| MscI | TGGCCA | 2 cut(s) | 5, 1218 |
| MseI | TTAA | 6 cut(s) | 123, 912, 1086, 1116, 1334, 1502 |
| MslI | CAYNNNNRTG | 4 cut(s) | 939, 1025, 1245, 1673 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 1218 |
| MspA1I | CMGCKG | 3 cut(s) | 653, 1370, 1457 |
| MspI | CCGG | 2 cut(s) | 9, 390 |
| MspR9I | CCNGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| Mva1269I | GAATGC | 1 cut(s) | 1412 |
| MvaI | CCWGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 380, 758, 767, 903, 1236, 1544 |
| NcoI | CCATGG | 2 cut(s) | 1020, 1240 |
| NdeII | GATC | 4 cut(s) | 262, 964, 1016, 1446 |
| NlaIV | GGNNCC | 7 cut(s) | 833, 834, 1018, 1226, 1398, 1636, 1637 |
| NmuCI | GTSAC | 2 cut(s) | 1588, 1693 |
| NsiI | ATGCAT | 1 cut(s) | 457 |
| NspI | RCATGY | 1 cut(s) | 534 |
| PctI | GAATGC | 1 cut(s) | 1412 |
| PdmI | GAANNNNTTC | 2 cut(s) | 876, 1412 |
| PfeI | GAWTC | 4 cut(s) | 95, 206, 466, 548 |
| PfoI | TCCNGGA | 2 cut(s) | 517, 703 |
| PkrI | GCNGC | 5 cut(s) | 246, 474, 751, 1387, 1456 |
| PleI | GAGTC | 2 cut(s) | 707, 1691 |
| PpsI | GAGTC | 2 cut(s) | 707, 1691 |
| PpuMI | RGGWCCY | 1 cut(s) | 832 |
| Psp124BI | GAGCTC | 1 cut(s) | 1162 |
| Psp5II | RGGWCCY | 1 cut(s) | 832 |
| Psp6I | CCWGG | 9 cut(s) | 31, 44, 517, 703, 972, 1291, 1486, 1622, 1630 |
| PspGI | CCWGG | 9 cut(s) | 31, 44, 517, 703, 972, 1291, 1486, 1622, 1630 |
| PspN4I | GGNNCC | 7 cut(s) | 833, 834, 1018, 1226, 1398, 1636, 1637 |
| PspOMI | GGGCCC | 1 cut(s) | 1635 |
| PspPI | GGNCC | 4 cut(s) | 832, 1396, 1635, 1636 |
| PspPPI | RGGWCCY | 1 cut(s) | 832 |
| PstNI | CAGNNNCTG | 1 cut(s) | 353 |
| PsuI | RGATCY | 2 cut(s) | 262, 1016 |
| PvuII | CAGCTG | 2 cut(s) | 653, 1457 |
| RsaI | GTAC | 2 cut(s) | 758, 1065 |
| RsaNI | GTAC | 2 cut(s) | 757, 1064 |
| RseI | CAYNNNNRTG | 4 cut(s) | 939, 1025, 1245, 1673 |
| SacI | GAGCTC | 1 cut(s) | 1162 |
| SaqAI | TTAA | 6 cut(s) | 123, 912, 1086, 1116, 1334, 1502 |
| SatI | GCNGC | 5 cut(s) | 245, 473, 750, 1386, 1455 |
| Sau3AI | GATC | 4 cut(s) | 262, 964, 1016, 1446 |
| Sau96I | GGNCC | 4 cut(s) | 832, 1396, 1635, 1636 |
| SchI | GAGTC | 2 cut(s) | 707, 1692 |
| ScrFI | CCNGG | 9 cut(s) | 33, 46, 519, 705, 974, 1293, 1488, 1624, 1632 |
| SduI | GDGCHC | 4 cut(s) | 1162, 1308, 1572, 1639 |
| SfaNI | GCATC | 5 cut(s) | 344, 442, 464, 896, 1336 |
| SinI | GGWCC | 2 cut(s) | 832, 1396 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 939, 1025, 1245, 1673 |
| SmlI | CTYRAG | 1 cut(s) | 1511 |
| SmoI | CTYRAG | 1 cut(s) | 1511 |
| SpeI | ACTAGT | 1 cut(s) | 1654 |
| SsiI | CCGC | 5 cut(s) | 143, 228, 470, 1228, 1370 |
| SspI | AATATT | 1 cut(s) | 433 |
| SspMI | CTAG | 4 cut(s) | 417, 962, 1143, 1655 |
| SstI | GAGCTC | 1 cut(s) | 1162 |
| StyD4I | CCNGG | 9 cut(s) | 31, 44, 517, 703, 972, 1291, 1486, 1622, 1630 |
| StyI | CCWWGG | 2 cut(s) | 1020, 1240 |
| TaaI | ACNGT | 5 cut(s) | 355, 462, 509, 1006, 1310 |
| TaiI | ACGT | 2 cut(s) | 71, 1036 |
| TaqI | TCGA | 4 cut(s) | 93, 176, 716, 1156 |
| TfiI | GAWTC | 4 cut(s) | 95, 206, 466, 548 |
| Tru1I | TTAA | 6 cut(s) | 123, 912, 1086, 1116, 1334, 1502 |
| Tru9I | TTAA | 6 cut(s) | 123, 912, 1086, 1116, 1334, 1502 |
| TscAI | CASTG | 2 cut(s) | 1410, 1579 |
| TseFI | GTSAC | 2 cut(s) | 1588, 1693 |
| TseI | GCWGC | 5 cut(s) | 244, 472, 749, 1385, 1454 |
| Tsp45I | GTSAC | 2 cut(s) | 1588, 1693 |
| TspDTI | ATGAA | 2 cut(s) | 923, 1164 |
| TspRI | CASTG | 2 cut(s) | 1410, 1579 |
| VpaK11BI | GGWCC | 2 cut(s) | 832, 1396 |
| XapI | RAATTY | 3 cut(s) | 343, 524, 539 |
| XbaI | TCTAGA | 2 cut(s) | 961, 1142 |
| XceI | RCATGY | 1 cut(s) | 534 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 52, 980 |
| XmnI | GAANNNNTTC | 2 cut(s) | 876, 1412 |
| XspI | CTAG | 4 cut(s) | 417, 962, 1143, 1655 |
| Zsp2I | ATGCAT | 1 cut(s) | 457 |