Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004382

Physical Location & Seq

Genomic Coordinates Forward (+)

14491911 .. 14496042

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017248

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGCTCCACCTCGTAAAACCCCTCCGCCCCGATCTCCGCCGTCTGCGGTGGGCCCACTTCAAGGCACCAAAGCCCCCAAAGCCTCCGGAATCCCCTCCGAAACCGCCAAACCCTCCCCAGAAGCCCGAAACCTTCACCCTCCACGACCACACGTGGCAGGACCCCTACAGCTGGATGTCCAAGCTCAACGACAAGGTCGCCATGCGACACATGGACATGTACATGGAACAAGAAGACAAGTACACCGAAGCTGTCATGTACGGCACCGACCGCCTCCAGAGCAAGCTCCAGTCCGAGATGGCCTCCCGCTTGTCCTTCGACCTCTCCACTCCTCCCCTCAAATTCGGACCCTGGTTGTACTACCGGCGCGTGGAGGAAGGGAAGCAGTTTCCGGTGCTGTGTCGTCGACTCGCGAGTTTACACGACGAGTTCATTTCTCATAAGTCGCCTTCTGCTGGGTTTGATTTTACTTCCGGGAAGAGAATTGAGCAGAAGCTGATTGATTACAATCAAGAAGCTCAAAGATTTGGAGGTTATGCATATGAGGAATTATCGGAAGTTTCACCGGATCACCGGTTTATTGCTTATACAATGTATGATAAGGACAAGGACTTGTTTAGGTTGTCTGTTAGGAACTTGAATTCTGGTGCATTGTGTAGTAAGCCTCAAGCGGAGCGTGTTTCGAATTTGGCTTGGGCCAAAGACGGGCAGGCATTGCTTTATGTTGTTACTGATCAGAACAAGCGGCCATATAGGATATATTGTAGCATGATTGGATCGACTGATGAGGACGTTTTGGTTTTTGAAGAATCGGATAATAATGTGTTTGTCAACATTAGACACACAAAAGATTTCCGGTTTGTGACTGTAAATACCTTCTCTACCGCGTCTTCCAAGGTCTTTTTGATAAATGCAGCTGATCCATTGTCGGGGCTGAACTTAGTTTGGCAGTGTGAAGGTATAGCGCATTGCATACTTGAGCATCACCAAGGATATCTTTTTCTGTTTACAGATGCTGCCAAAGGAGGGCAGTCAGTTGATAACCATTATCTCCTTCGTAGTCCTGTGGATTATTCGAGCAGTCCAAGAATATGGGAGGATGTATTCCTCAGTGACCCAGACTGGGTTGTTGAGGATGTGGATTTCAGTCATACACACTTGGTACTTAATATAAGGGAAGGGCAAAACTTTAGACTTTGTTCTGTTGCTTTACCTTTGCCTGCTGGGAAGGGACCAGTTCATCTAAAAGAGCTTCACCCACAATTCTTGCCTCTTCCAAAATATGTTTCGCAAATTTCACCTGGGCCAAATTATGACTACCATTCATCAAAGATGCGCTTTACAATATCGTCACCTGTGATGCCAGATGCTGTGGTTGATTATGACCTGTCAAATGGAAACTGGAAGATCATTCAACAGCAGAATATTCTTCATGAAAGAACAAAGGTTTTGTATGGAACAGCTTCTTCAGCAAGCATCAGCGGGAAAACCTTAAATACAGATAATTTGAATTCTGCAAATGAAGTCAGCCCTGATGATCAGCAGTTGTGGAATGATCTTTCTGAGTTTTATGCTTGTGAACAGCATAATGTCTCTTCTTATGATGGAGTCTTGGTTCCATTGACTGTTGTATACTCTCGCAAAAACAAGAAAGAGGATCAGAACCCTGGATTGCTTCATGTGCATGGAGCTTATGGTGAGCTACTCGATAAAAGGTGGCGCAATGAGTTGAAAAGCCTTCTTGATCGTGGTTGGATGGTTGCCTATGCTGATGTTAGAGGTGGAGGCGGTGGAGGTAAGAAGTGGCATCATGATGGAAGATGTACAAAGAAGATTAATTCCATCAAGGATTTTATAGCCTGTGCCAATTTCCTTGTTGACAAAGAAATTGTCCATGAAAAAAAGCTTGCTGCTTCAGGTTATAGTGCTGGAGGACTTGTAGTTGCTTCAGCCATCAATCAATGCCCACATTTGTTTACTGCTGCAGTTTTGAAGGTTCCATTTTTAGATGCGACGAGCACTCTTCTCTATCCCATTATACCGCTCACAGCTGTTGACTATGAAGAGTTTGGTTACCCTGGGGACATTAATGATTTTCATGCTATACGTGACTATTCTCCATATGACAATATTCAGAAGGATGTTCTCTATCCAGCTGTATTGATATCCTCATCTTTCAATACACGTTTTGGAGTGTGGGAAGCTGCAAAATGGGTTGCACGAGTTCGTGAGCTTACAGTTTACGACCCAAAGCGTCCAATACTGCTTAATTTGACAACAGACATAGTAGAGGAAAACAGGTACCTCCAGTGCAAGGAATCGGCACTAGAGACTGCATTTCTTATAAAGGCAATGGAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

788

Amino Acids

89.63

Weight (kDa)

6.33

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S9_N	PF02897	39 - 474	4.4e-43	Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9	PF00326	575 - 744	2.5e-34	Prolyl oligopeptidase family
Hydrolase_4	PF12146	577 - 675	5.6e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66960
fragaria_vesca	FvH4_1g14740 FvH4_1g14740 FvH4_1g14740 FvH4_1g14740 FvH4_1g14740
malus_domestica	MD15G1274800.v1.1
prunus_persica	Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1
pyrus_communis	pycom15g23790
rosa_chinensis	RchiOBHm_Chr1g0319111 RchiOBHm_Chr2g0103681
rosa_laevigata	RLG00000017248 RLG00000029580 RLG00000030483
rosa_multiflora	Rmu_sc0001852.1_g000011 Rmu_sc0003574.1_g000010 Rmu_sc0009469.1_g000007
rosa_roxburghii	Rroxscaffold_2G00139490 Rroxscaffold_4G00328470
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh1AG038700 Rh2AG165200 Rh2BG172400 Rh2CG171300 Rh2DG170800 Rh5CG361300
rosa_wichuraiana	Rw1G003040 Rw2G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2345
Acc65I	GGTACC	1 cut(s)	2301
AccB1I	GGYRCC	3 cut(s)	64, 263, 2301
AccBSI	CCGCTC	1 cut(s)	2044
AccI	GTMKAC	2 cut(s)	406, 1632
AccII	CGCG	3 cut(s)	369, 413, 887
AccIII	TCCGGA	1 cut(s)	85
AclWI	GGATC	4 cut(s)	576, 784, 914, 1665
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	5 cut(s)	341, 640, 685, 1293, 1510
AcuI	CTGAAG	3 cut(s)	1452, 1899, 1932
AcvI	CACGTG	1 cut(s)	153
AfaI	GTAC	7 cut(s)	221, 242, 260, 359, 1164, 1825, 2303
AfiI	CCNNNNNNNGG	9 cut(s)	61, 171, 370, 455, 705, 929, 1026, 1123, 2314
AflIII	ACRYGT	3 cut(s)	150, 216, 2183
AgeI	ACCGGT	1 cut(s)	573
AgsI	TTSAA	8 cut(s)	61, 640, 806, 1415, 1510, 1732, 1993, 2179
AjnI	CCWGG	4 cut(s)	350, 1300, 1666, 2077
AjuI	GAANNNNNNNTTGG	2 cut(s)	1270, 1302
AloI	GAACNNNNNNTCC	2 cut(s)	1599, 1631
Alw21I	GWGCWC	1 cut(s)	2021
Alw26I	GTCTC	2 cut(s)	1597, 2324
AlwI	GGATC	4 cut(s)	576, 784, 914, 1665
AlwNI	CAGNNNCTG	3 cut(s)	496, 1016, 1370
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	5 cut(s)	51, 300, 696, 746, 1304
ApaI	GGGCCC	1 cut(s)	55
ApeKI	GCWGC	5 cut(s)	914, 1016, 1910, 1982, 2204
ApoI	RAATTY	5 cut(s)	341, 640, 685, 1293, 1510
ArsI	GACNNNNNNTTYG	2 cut(s)	1875, 1907
AseI	ATTAAT	2 cut(s)	1836, 2088
AsiGI	ACCGGT	1 cut(s)	573
Asp700I	GAANNNNTTC	1 cut(s)	1462
Asp718I	GGTACC	1 cut(s)	2301
AspLEI	GCGC	4 cut(s)	369, 967, 1338, 1722
AspS9I	GGNCC	7 cut(s)	51, 52, 160, 347, 696, 1232, 1304
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	8 cut(s)	127, 555, 563, 977, 1247, 1290, 1344, 1709
AsuII	TTCGAA	1 cut(s)	683
AvaII	GGWCC	3 cut(s)	160, 347, 1232
BaeGI	GKGCMC	1 cut(s)	55
BanI	GGYRCC	3 cut(s)	64, 263, 2301
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	2220
BbrPI	CACGTG	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	240, 882
Bbv12I	GWGCWC	1 cut(s)	2021
BbvI	GCAGC	5 cut(s)	926, 1003, 1897, 1969, 2191
BccI	CCATC	6 cut(s)	292, 1598, 1750, 1808, 1850, 1961
BceAI	ACGGC	2 cut(s)	24, 277
BcgI	CGANNNNNNTGC	1 cut(s)	2340
BciT130I	CCWGG	4 cut(s)	352, 1302, 1668, 2079
BclI	TGATCA	2 cut(s)	733, 1537
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	1597, 2324
BfaI	CTAG	1 cut(s)	2327
BfmI	CTRYAG	2 cut(s)	166, 1983
BisI	GCNGC	6 cut(s)	746, 915, 1017, 1911, 1983, 2205
BlsI	GCNGC	6 cut(s)	747, 916, 1018, 1912, 1984, 2206
Bme1390I	CCNGG	5 cut(s)	352, 475, 1302, 1668, 2079
Bme18I	GGWCC	3 cut(s)	160, 347, 1232
BmgT120I	GGNCC	7 cut(s)	51, 52, 160, 347, 696, 1232, 1304
BmiI	GGNNCC	9 cut(s)	53, 66, 162, 265, 349, 1233, 1617, 1998, 2303
BmrFI	CCNGG	5 cut(s)	352, 475, 1302, 1668, 2079
BmrI	ACTGGG	1 cut(s)	1132
BmsI	GCATC	8 cut(s)	991, 1003, 1323, 1350, 1357, 1485, 1816, 1999
BmuI	ACTGGG	1 cut(s)	1132
BpiI	GAAGAC	2 cut(s)	240, 882
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	4 cut(s)	260, 272, 1950, 2291
Bpu14I	TTCGAA	1 cut(s)	683
BpuEI	CTTGAG	2 cut(s)	651, 998
BpuMI	CCSGG	1 cut(s)	475
BsaAI	YACGTR	2 cut(s)	153, 2108
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	7 cut(s)	350, 894, 988, 1301, 1666, 2077, 2078
BsaWI	WCCGGW	5 cut(s)	85, 391, 565, 573, 855
BsaXI	ACNNNNNCTCC	4 cut(s)	1599, 1629, 1923, 1953
Bsc4I	CCNNNNNNNGG	9 cut(s)	61, 171, 370, 455, 705, 929, 1026, 1123, 2314
Bse118I	RCCGGY	2 cut(s)	363, 573
Bse1I	ACTGG	5 cut(s)	289, 1127, 1235, 1406, 2308
Bse3DI	GCAATG	4 cut(s)	713, 967, 1729, 2358
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	4 cut(s)	352, 1302, 1668, 2079
BseDI	CCNNGG	7 cut(s)	350, 894, 988, 1301, 1666, 2077, 2078
BseGI	GGATG	5 cut(s)	180, 1105, 1141, 1761, 2146
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	9 cut(s)	61, 171, 370, 455, 705, 929, 1026, 1123, 2314
BseMI	GCAATG	4 cut(s)	713, 967, 1729, 2358
BseMII	CTCAG	2 cut(s)	1123, 1554
BseNI	ACTGG	5 cut(s)	289, 1127, 1235, 1406, 2308
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	5 cut(s)	926, 1003, 1897, 1969, 2191
BseYI	CCCAGC	2 cut(s)	455, 1223
Bsh1236I	CGCG	3 cut(s)	369, 413, 887
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	5 cut(s)	53, 302, 698, 748, 1306
BshNI	GGYRCC	3 cut(s)	64, 263, 2301
BshTI	ACCGGT	1 cut(s)	573
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	2021
BsiSI	CCGG	7 cut(s)	86, 364, 392, 474, 566, 574, 856
BslFI	GGGAC	2 cut(s)	1245, 2096
BslI	CCNNNNNNNGG	9 cut(s)	61, 171, 370, 455, 705, 929, 1026, 1123, 2314
BsmAI	GTCTC	2 cut(s)	1597, 2324
BsmFI	GGGAC	2 cut(s)	1245, 2096
BsnI	GGCC	5 cut(s)	53, 302, 698, 748, 1306
Bsp119I	TTCGAA	1 cut(s)	683
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	55, 2021
Bsp13I	TCCGGA	1 cut(s)	85
Bsp1407I	TGTACA	2 cut(s)	219, 1823
Bsp68I	TCGCGA	1 cut(s)	413
BspANI	GGCC	5 cut(s)	53, 302, 698, 748, 1306
BspCNI	CTCAG	2 cut(s)	1122, 1555
BspEI	TCCGGA	1 cut(s)	85
BspFNI	CGCG	3 cut(s)	369, 413, 887
BspHI	TCATGA	2 cut(s)	1432, 1810
BspLI	GGNNCC	9 cut(s)	53, 66, 162, 265, 349, 1233, 1617, 1998, 2303
BspMAI	CTGCAG	1 cut(s)	1987
BspPI	GGATC	4 cut(s)	576, 784, 914, 1665
BspT104I	TTCGAA	1 cut(s)	683
BspT107I	GGYRCC	3 cut(s)	64, 263, 2301
BsrBI	CCGCTC	1 cut(s)	2044
BsrDI	GCAATG	4 cut(s)	713, 967, 1729, 2358
BsrFI	RCCGGY	2 cut(s)	363, 573
BsrGI	TGTACA	2 cut(s)	219, 1823
BsrI	ACTGG	5 cut(s)	289, 1127, 1235, 1406, 2308
BssAI	RCCGGY	2 cut(s)	363, 573
BssECI	CCNNGG	7 cut(s)	350, 894, 988, 1301, 1666, 2077, 2078
BssNAI	GTATAC	1 cut(s)	1633
BssSI	CACGAG	1 cut(s)	2220
BssT1I	CCWWGG	2 cut(s)	894, 988
Bst1107I	GTATAC	1 cut(s)	1633
Bst2BI	CACGAG	1 cut(s)	2220
Bst2UI	CCWGG	4 cut(s)	352, 1302, 1668, 2079
Bst4CI	ACNGT	3 cut(s)	868, 1627, 2239
Bst6I	CTCTTC	5 cut(s)	473, 1278, 1600, 2028, 2058
BstAPI	GCANNNNNTGC	1 cut(s)	715
BstAUI	TGTACA	2 cut(s)	219, 1823
BstBAI	YACGTR	2 cut(s)	153, 2108
BstBI	TTCGAA	1 cut(s)	683
BstC8I	GCNNGC	5 cut(s)	284, 711, 1221, 1474, 1908
BstDEI	CTNAG	3 cut(s)	940, 1109, 1563
BstEII	GGTNACC	1 cut(s)	2072
BstF5I	GGATG	5 cut(s)	180, 1105, 1141, 1761, 2146
BstFNI	CGCG	3 cut(s)	369, 413, 887
BstHHI	GCGC	4 cut(s)	369, 967, 1338, 1722
BstMAI	GTCTC	2 cut(s)	1597, 2324
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 270, 279, 715, 1469, 1681
BstNI	CCWGG	4 cut(s)	352, 1302, 1668, 2079
BstNSI	RCATGY	1 cut(s)	220
BstPI	GGTNACC	1 cut(s)	2072
BstSCI	CCNGG	5 cut(s)	350, 473, 1300, 1666, 2077
BstSFI	CTRYAG	2 cut(s)	166, 1983
BstSLI	GKGCMC	1 cut(s)	55
BstUI	CGCG	3 cut(s)	369, 413, 887
BstV1I	GCAGC	5 cut(s)	926, 1003, 1897, 1969, 2191
BstV2I	GAAGAC	2 cut(s)	240, 882
BstXI	CCANNNNNNTGG	1 cut(s)	1092
BstZ17I	GTATAC	1 cut(s)	1633
BsuRI	GGCC	5 cut(s)	53, 302, 698, 748, 1306
BtsCI	GGATG	5 cut(s)	180, 1105, 1141, 1761, 2146
BtsI	GCAGTG	1 cut(s)	956
BtsIMutI	CAGTG	3 cut(s)	956, 1117, 2315
BtuMI	TCGCGA	1 cut(s)	413
Cac8I	GCNNGC	5 cut(s)	284, 711, 1221, 1474, 1908
CaiI	CAGNNNCTG	3 cut(s)	496, 1016, 1370
CciI	TCATGA	2 cut(s)	1432, 1810
CfoI	GCGC	4 cut(s)	369, 967, 1338, 1722
Cfr10I	RCCGGY	2 cut(s)	363, 573
Cfr13I	GGNCC	7 cut(s)	51, 52, 160, 347, 696, 1232, 1304
CseI	GACGC	2 cut(s)	876, 2243
Csp6I	GTAC	7 cut(s)	220, 241, 259, 358, 1163, 1824, 2302
CspAI	ACCGGT	1 cut(s)	573
CspCI	CAANNNNNGTGG	2 cut(s)	1248, 1283
CviQI	GTAC	7 cut(s)	220, 241, 259, 358, 1163, 1824, 2302
DdeI	CTNAG	3 cut(s)	940, 1109, 1563
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	5 cut(s)	473, 1278, 1600, 2028, 2058
EarI	CTCTTC	5 cut(s)	473, 1278, 1600, 2028, 2058
EciI	GGCGGA	2 cut(s)	14, 26
Eco130I	CCWWGG	2 cut(s)	894, 988
Eco24I	GRGCYC	1 cut(s)	55
Eco32I	GATATC	2 cut(s)	995, 2166
Eco47I	GGWCC	3 cut(s)	160, 347, 1232
Eco57I	CTGAAG	3 cut(s)	1452, 1899, 1932
Eco72I	CACGTG	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	2072
EcoO109I	RGGNCCY	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	2072
EcoRI	GAATTC	2 cut(s)	640, 1510
EcoRII	CCWGG	4 cut(s)	350, 1300, 1666, 2077
EcoRV	GATATC	2 cut(s)	995, 2166
EcoT14I	CCWWGG	2 cut(s)	894, 988
EcoT22I	ATGCAT	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	894, 988
FalI	AAGNNNNNCTT	4 cut(s)	981, 1013, 1322, 1354
FaqI	GGGAC	2 cut(s)	1245, 2096
FauI	CCCGC	2 cut(s)	314, 1475
FauNDI	CATATG	2 cut(s)	541, 2122
FbaI	TGATCA	2 cut(s)	733, 1537
FblI	GTMKAC	2 cut(s)	406, 1632
Fnu4HI	GCNGC	6 cut(s)	746, 915, 1017, 1911, 1983, 2205
FokI	GGATG	5 cut(s)	187, 1112, 1148, 1768, 2153
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	6 cut(s)	746, 915, 1017, 1911, 1983, 2205
FspBI	CTAG	1 cut(s)	2327
GlaI	GCGC	4 cut(s)	368, 966, 1337, 1721
GluI	GCNGC	6 cut(s)	746, 915, 1017, 1911, 1983, 2205
GsaI	CCCAGC	2 cut(s)	459, 1227
GsuI	CTGGAG	4 cut(s)	260, 272, 1950, 2291
HaeIII	GGCC	5 cut(s)	53, 302, 698, 748, 1306
HapII	CCGG	7 cut(s)	86, 364, 392, 474, 566, 574, 856
HgaI	GACGC	2 cut(s)	876, 2243
HhaI	GCGC	4 cut(s)	369, 967, 1338, 1722
Hin6I	GCGC	4 cut(s)	367, 965, 1336, 1720
HinP1I	GCGC	4 cut(s)	367, 965, 1336, 1720
HincII	GTYRAC	4 cut(s)	407, 832, 1879, 2056
HindII	GTYRAC	4 cut(s)	407, 832, 1879, 2056
HindIII	AAGCTT	1 cut(s)	1904
HinfI	GANTC	6 cut(s)	89, 408, 809, 1608, 2318, 2357
HpaII	CCGG	7 cut(s)	86, 364, 392, 474, 566, 574, 856
HphI	GGTGA	8 cut(s)	127, 555, 563, 977, 1247, 1290, 1344, 1709
Hpy188I	TCNGA	9 cut(s)	99, 295, 347, 556, 738, 814, 1564, 1662, 2136
Hpy188III	TCNNGA	8 cut(s)	86, 277, 412, 512, 1433, 1742, 1811, 2228
Hpy99I	CGWCG	3 cut(s)	408, 428, 2017
HpyCH4III	ACNGT	3 cut(s)	868, 1627, 2239
HpyCH4IV	ACGT	4 cut(s)	152, 792, 2107, 2185
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 270, 279, 715, 1469, 1681
HpyF3I	CTNAG	3 cut(s)	940, 1109, 1563
HpySE526I	ACGT	4 cut(s)	152, 792, 2107, 2185
HspAI	GCGC	4 cut(s)	367, 965, 1336, 1720
Kpn2I	TCCGGA	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	2305
Ksp22I	TGATCA	2 cut(s)	733, 1537
LmnI	GCTCC	4 cut(s)	9, 291, 673, 1688
Lsp1109I	GCAGC	5 cut(s)	926, 1003, 1897, 1969, 2191
LweI	GCATC	8 cut(s)	991, 1003, 1323, 1350, 1357, 1485, 1816, 1999
MaeI	CTAG	1 cut(s)	2327
MaeII	ACGT	4 cut(s)	152, 792, 2107, 2185
MaeIII	GTNAC	6 cut(s)	727, 862, 1112, 1350, 2072, 2108
MbiI	CCGCTC	1 cut(s)	2044
MhlI	GDGCHC	2 cut(s)	55, 2021
MlyI	GAGTC	2 cut(s)	402, 1617
MmeI	TCCRAC	1 cut(s)	1733
Mph1103I	ATGCAT	1 cut(s)	541
MroI	TCCGGA	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	1462
MseI	TTAA	5 cut(s)	1167, 1493, 1836, 2088, 2268
MslI	CAYNNNNRTG	4 cut(s)	215, 221, 1683, 1812
MspA1I	CMGCKG	5 cut(s)	171, 917, 1482, 2051, 2156
MspI	CCGG	7 cut(s)	86, 364, 392, 474, 566, 574, 856
MspR9I	CCNGG	5 cut(s)	352, 475, 1302, 1668, 2079
MvaI	CCWGG	4 cut(s)	352, 1302, 1668, 2079
MvnI	CGCG	3 cut(s)	369, 413, 887
MwoI	GCNNNNNNNGC	6 cut(s)	79, 270, 279, 715, 1469, 1681
NciI	CCSGG	1 cut(s)	475
NdeI	CATATG	2 cut(s)	541, 2122
NlaIV	GGNNCC	9 cut(s)	53, 66, 162, 265, 349, 1233, 1617, 1998, 2303
NmuCI	GTSAC	4 cut(s)	862, 1112, 1350, 2108
NruI	TCGCGA	1 cut(s)	413
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	683
PagI	TCATGA	2 cut(s)	1432, 1810
PasI	CCCWGGG	1 cut(s)	2078
PciI	ACATGT	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	1462
PfeI	GAWTC	4 cut(s)	89, 809, 2318, 2357
PflFI	GACNNNGTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	473
PinAI	ACCGGT	1 cut(s)	573
PkrI	GCNGC	6 cut(s)	747, 916, 1018, 1912, 1984, 2206
PleI	GAGTC	2 cut(s)	402, 1616
PmaCI	CACGTG	1 cut(s)	153
PmlI	CACGTG	1 cut(s)	153
PpsI	GAGTC	2 cut(s)	402, 1616
Ppu21I	YACGTR	2 cut(s)	153, 2108
PpuMI	RGGWCCY	1 cut(s)	160
PscI	ACATGT	1 cut(s)	216
PshBI	ATTAAT	2 cut(s)	1836, 2088
PsiI	TTATAA	1 cut(s)	2345
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	4 cut(s)	350, 1300, 1666, 2077
PspCI	CACGTG	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	2072
PspFI	CCCAGC	2 cut(s)	455, 1223
PspGI	CCWGG	4 cut(s)	350, 1300, 1666, 2077
PspN4I	GGNNCC	9 cut(s)	53, 66, 162, 265, 349, 1233, 1617, 1998, 2303
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	7 cut(s)	51, 52, 160, 347, 696, 1232, 1304
PspPPI	RGGWCCY	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	1987
PstNI	CAGNNNCTG	3 cut(s)	496, 1016, 1370
PsyI	GACNNNGTC	1 cut(s)	194
PvuII	CAGCTG	4 cut(s)	171, 917, 2051, 2156
RruI	TCGCGA	1 cut(s)	413
RsaI	GTAC	7 cut(s)	221, 242, 260, 359, 1164, 1825, 2303
RsaNI	GTAC	7 cut(s)	220, 241, 259, 358, 1163, 1824, 2302
RseI	CAYNNNNRTG	4 cut(s)	215, 221, 1683, 1812
SalI	GTCGAC	1 cut(s)	405
SaqAI	TTAA	5 cut(s)	1167, 1493, 1836, 2088, 2268
SatI	GCNGC	6 cut(s)	746, 915, 1017, 1911, 1983, 2205
Sau96I	GGNCC	7 cut(s)	51, 52, 160, 347, 696, 1232, 1304
SchI	GAGTC	2 cut(s)	402, 1617
ScrFI	CCNGG	5 cut(s)	352, 475, 1302, 1668, 2079
SduI	GDGCHC	2 cut(s)	55, 2021
SfaNI	GCATC	8 cut(s)	991, 1003, 1323, 1350, 1357, 1485, 1816, 1999
SfcI	CTRYAG	2 cut(s)	166, 1983
SfuI	TTCGAA	1 cut(s)	683
SinI	GGWCC	3 cut(s)	160, 347, 1232
SmiMI	CAYNNNNRTG	4 cut(s)	215, 221, 1683, 1812
SmlI	CTYRAG	2 cut(s)	666, 977
SmoI	CTYRAG	2 cut(s)	666, 977
SspI	AATATT	2 cut(s)	1426, 2131
SspMI	CTAG	1 cut(s)	2327
StyD4I	CCNGG	5 cut(s)	350, 473, 1300, 1666, 2077
StyI	CCWWGG	2 cut(s)	894, 988
TaaI	ACNGT	3 cut(s)	868, 1627, 2239
TaiI	ACGT	4 cut(s)	155, 795, 2110, 2188
TaqI	TCGA	6 cut(s)	318, 406, 683, 779, 1076, 1707
TatI	WGTACW	4 cut(s)	219, 240, 357, 1823
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	4 cut(s)	89, 809, 2318, 2357
Tru1I	TTAA	5 cut(s)	1167, 1493, 1836, 2088, 2268
Tru9I	TTAA	5 cut(s)	1167, 1493, 1836, 2088, 2268
TscAI	CASTG	3 cut(s)	956, 1117, 2315
TseFI	GTSAC	4 cut(s)	862, 1112, 1350, 2108
TseI	GCWGC	5 cut(s)	914, 1016, 1910, 1982, 2204
Tsp45I	GTSAC	4 cut(s)	862, 1112, 1350, 2108
TspRI	CASTG	3 cut(s)	956, 1117, 2315
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	3 cut(s)	160, 347, 1232
VspI	ATTAAT	2 cut(s)	1836, 2088
XapI	RAATTY	5 cut(s)	341, 640, 685, 1293, 1510
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmiI	GTMKAC	2 cut(s)	406, 1632
XmnI	GAANNNNTTC	1 cut(s)	1462
XspI	CTAG	1 cut(s)	2327
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.