Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004382

Physical Location & Seq

Genomic Coordinates Forward (+)

15564696 .. 15568768

Gene Structure 4073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG165200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGCTCCACCTCGTAAAACCCCTCCACCCCCATCTCCGCCGTCTGCGGTGGGCCCACTTCAAGGCCCCAAAGCCGCCGGAATCCCCTCCGAAACCGCCAAACCCTCCCCAGAAGCCCGAAACCTTCACCCTCCACGACCACACGTGGCAGGACCCCTACAGCTGGATGTCCAAGCTCAACGACAAGGTCGCCATGCGACACATGGACATGTACATGGAACAGGAAGACAAGTACACCGAAGCTGTCATGTACGGCACCGACCGCCTCCAGAGCAAGCTCCAGTCCGAGATGGCCTCCCGCCTTTCCTTCGACCTCTCCACTCCTCCCCTCAAATTCGGACCATCGTTGTACTACCGGCGCGTGGAGGAAGGTAAGCAGTTTCCGGTGCTTTGTCGTCGACTCGCGAGTCTACACGACGAGTTCATTTCTCATAAGTCGCCTTCTGCTGGGTTTGATTTTACTTCCGGGAAGAGAATTGAGCAGAAGCTGATTGATTACAATCAAGAAGCTCAAAGATTTGGAGGTTATGCATATGAAGAATTATCGGAAGTTTCGCCGGATCATCGGTTTATTGCTTATACAATGTATGATAAAGACAAGGACTTGTTTAGGTTGTCTGTTAGGAACTTAAATTCTGGTGCATTGTGTAGTAAGCCTCAAGCGGAGCGTGTTTCGAATTTGGCTTGGGCCAAAGACGGGCAGGCATTGCTTTATGTTGTTACCGATCAGAACAAGCGGCCATATAGGATATATTGTAGCATGATTGGATCGACTGATGAGGACGTTTTGGTTTTTGAAGAATCGGATAATAATGTGTTTGTCAACATTAGACACACGAAAGATTTCCGGTTTGTGACTGTAAATACCTTCTCTACCGCGTCTTCCAAGGTCTTTTTGATAAATGCAGCTGATCCATTGTCGGGGTTGAACTTAGTTTGGCAGTGTGAAGGTATAGCACATTGCGTACTTGAGCATCACCAAGGATATCTTTTTCTTTTTACAGATGCTGCCAAAGGAGGGCAGTCAGTTGATAACCATTATCTCCTTCGTAGTCCTGTGGATTCTTCGAGCAGTCCAAGAATATGGGAGGATGTATTCGTCAGTGACCCAGACTGGGTTGTTGAGGATGTGGATTTCAGTCATACACACTTGGTACTTAATATAAGGGAAGGGAGAAACTTTAGACTTTGTTCTGTTGCTTTACCTTTGCCTGCTGGGAAGGGACCAGTTCATCTAAAAGAGCTTCACCCACAATTCTTGCCTCTTCCAAAATATGTTTCGCAAATTTCACCTGGACCAAATTATGACTACCATTCATCAAAGATGCGCTTTACAATATCGTCACCTGTGATGCCAGATGCTGTGGTTGATTATGACCTGTCAAATGGAAACTGGAAGATCATTCAACAGCAGAATATTCTTCATGAAAGAACAAAGGTTTTGTATGGAACAGCTTCTTCAGCAAGCATCAGCGAGAAAACCTTAAATACAGATAATTTGAATTCTGCAAATGAAGTCAGCCCTGATGATCAGCAGTTGTGGAATGATCTTTCTGAGTTTTATGCTTGTGAACAGCATAATGTCTCTTCTTATGATGGAGTCTTGGTTCCATTGACTGTTGTATACTCTCGCAAAAACAAGAAAGAGGATCAGAACCCTGGATTACTTCATGTGCATGGGGCTTATGGTGAGCTACTCGATAAAAGGTGGTGCAGTGAGTTGAAAAGCCTTCTTGATCGTGGTTGGATGGTTGCCTATGCTGATGTTAGAGGTGGAGGCGGTGGAGGTAAGAAGTGGCATCATGATGGAAGATGTACAAAGAAGATTAATTCCATCAAGGATTTTATAGCCTGTGCCAATTTCCTTGTTGACAAAGAAATTGTCCATGAAAAAAAGCTTGCTGCTTCAGGTTATAGTGCTGGAGGACTTGTAGTTGCTTCAGCCATCAATCAATGCCCACATTTGTTTACTGCTGCAGTTTTGAAGGTTCCATTTTTAGATGCAACGAGCACTCTTCTCTATCCCATTATACCGCTCACAGCTGTTGACTATGAAGAGTTTGGATACCCTGGGGACATTAATGATTTTCATGCTATACGTGACTATTCTCCATATGACAATATTCAGAAGGATGTTCTCTATCCAGCTGTATTGATATCCTCATCTTTCAATACACGTTTTGGAGTGTGGGAAGCTGCAAAATGGGTTGCACGAGTTCGTGAACTTACAGTTTACGACCCAAAGCGTCCAATACTGCTTAATTTGACAACAGACATAGTAGAGGAAAACAGGTACCTCCAGTGCAAGGAATCGGCACTAGAGACTGCATTTCTTATAAAGGCAATGGAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

784

Amino Acids

89.12

Weight (kDa)

6.25

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S9_N	PF02897	36 - 471	1.6e-42	Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9	PF00326	573 - 741	3.2e-34	Prolyl oligopeptidase family
Hydrolase_4	PF12146	575 - 672	7e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66960
fragaria_vesca	FvH4_1g14740 FvH4_1g14740 FvH4_1g14740 FvH4_1g14740 FvH4_1g14740
malus_domestica	MD15G1274800.v1.1
prunus_persica	Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1
pyrus_communis	pycom15g23790
rosa_chinensis	RchiOBHm_Chr1g0319111 RchiOBHm_Chr2g0103681
rosa_laevigata	RLG00000017248 RLG00000029580 RLG00000030483
rosa_multiflora	Rmu_sc0001852.1_g000011 Rmu_sc0003574.1_g000010 Rmu_sc0009469.1_g000007
rosa_roxburghii	Rroxscaffold_2G00139490 Rroxscaffold_4G00328470
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh1AG038700 Rh2AG165200 Rh2BG172400 Rh2CG171300 Rh2DG170800 Rh5CG361300
rosa_wichuraiana	Rw1G003040 Rw2G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2336
AasI	GACNNNNNNGTC	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	2292
AccB1I	GGYRCC	2 cut(s)	254, 2292
AccBSI	CCGCTC	1 cut(s)	2035
AccI	GTMKAC	3 cut(s)	397, 409, 1623
AccII	CGCG	3 cut(s)	360, 404, 878
AclWI	GGATC	4 cut(s)	567, 775, 905, 1656
AcoI	YGGCCR	1 cut(s)	737
AcsI	RAATTY	5 cut(s)	332, 631, 676, 1284, 1501
AcuI	CTGAAG	3 cut(s)	1443, 1890, 1923
AcvI	CACGTG	1 cut(s)	144
AfaI	GTAC	8 cut(s)	212, 233, 251, 350, 966, 1155, 1816, 2294
AfiI	CCNNNNNNNGG	9 cut(s)	61, 162, 361, 446, 696, 920, 1017, 1114, 2305
AflIII	ACRYGT	3 cut(s)	141, 207, 2174
AgsI	TTSAA	8 cut(s)	61, 797, 928, 1406, 1501, 1723, 1984, 2170
AjnI	CCWGG	3 cut(s)	1291, 1657, 2068
AjuI	GAANNNNNNNTTGG	2 cut(s)	1261, 1293
AloI	GAACNNNNNNTCC	2 cut(s)	1590, 1622
Alw21I	GWGCWC	1 cut(s)	2012
Alw26I	GTCTC	2 cut(s)	1588, 2315
AlwI	GGATC	4 cut(s)	567, 775, 905, 1656
AlwNI	CAGNNNCTG	3 cut(s)	487, 1007, 1361
AoxI	GGCC	5 cut(s)	51, 63, 291, 687, 737
ApaI	GGGCCC	1 cut(s)	55
ApeKI	GCWGC	5 cut(s)	905, 1007, 1901, 1973, 2195
ApoI	RAATTY	5 cut(s)	332, 631, 676, 1284, 1501
ArsI	GACNNNNNNTTYG	2 cut(s)	1866, 1898
AseI	ATTAAT	2 cut(s)	1827, 2079
Asp700I	GAANNNNTTC	2 cut(s)	842, 1453
Asp718I	GGTACC	1 cut(s)	2292
AspLEI	GCGC	2 cut(s)	360, 1329
AspS9I	GGNCC	8 cut(s)	51, 52, 64, 151, 338, 687, 1223, 1295
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	6 cut(s)	118, 968, 1238, 1281, 1335, 1700
AsuII	TTCGAA	1 cut(s)	674
AvaII	GGWCC	4 cut(s)	151, 338, 1223, 1295
BaeGI	GKGCMC	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	254, 2292
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	2211
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	2 cut(s)	231, 873
Bbv12I	GWGCWC	1 cut(s)	2012
BbvI	GCAGC	5 cut(s)	917, 994, 1888, 1960, 2182
BccI	CCATC	8 cut(s)	39, 283, 349, 1589, 1741, 1799, 1841, 1952
BceAI	ACGGC	2 cut(s)	24, 268
BcgI	CGANNNNNNTGC	1 cut(s)	2331
BciT130I	CCWGG	3 cut(s)	1293, 1659, 2070
BciVI	GTATCC	1 cut(s)	2057
BclI	TGATCA	1 cut(s)	1528
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	1588, 2315
BfaI	CTAG	1 cut(s)	2318
BfmI	CTRYAG	2 cut(s)	157, 1974
BfuI	GTATCC	1 cut(s)	2057
BisI	GCNGC	7 cut(s)	74, 737, 906, 1008, 1902, 1974, 2196
BlsI	GCNGC	7 cut(s)	75, 738, 907, 1009, 1903, 1975, 2197
Bme1390I	CCNGG	4 cut(s)	466, 1293, 1659, 2070
Bme18I	GGWCC	4 cut(s)	151, 338, 1223, 1295
BmgT120I	GGNCC	8 cut(s)	51, 52, 64, 151, 338, 687, 1223, 1295
BmiI	GGNNCC	8 cut(s)	53, 66, 153, 256, 1224, 1608, 1989, 2294
BmrFI	CCNGG	4 cut(s)	466, 1293, 1659, 2070
BmrI	ACTGGG	1 cut(s)	1123
BmsI	GCATC	8 cut(s)	982, 994, 1314, 1341, 1348, 1476, 1807, 1990
BmuI	ACTGGG	1 cut(s)	1123
BpiI	GAAGAC	2 cut(s)	231, 873
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	4 cut(s)	251, 263, 1941, 2282
Bpu14I	TTCGAA	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	642, 989
BpuMI	CCSGG	1 cut(s)	466
BsaAI	YACGTR	2 cut(s)	144, 2099
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	5 cut(s)	885, 979, 1657, 2068, 2069
BsaWI	WCCGGW	2 cut(s)	382, 846
BsaXI	ACNNNNNCTCC	4 cut(s)	1590, 1620, 1914, 1944
Bsc4I	CCNNNNNNNGG	9 cut(s)	61, 162, 361, 446, 696, 920, 1017, 1114, 2305
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	5 cut(s)	280, 1118, 1226, 1397, 2299
Bse3DI	GCAATG	3 cut(s)	704, 958, 2349
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	3 cut(s)	1293, 1659, 2070
BseDI	CCNNGG	5 cut(s)	885, 979, 1657, 2068, 2069
BseGI	GGATG	5 cut(s)	171, 1096, 1132, 1752, 2137
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	9 cut(s)	61, 162, 361, 446, 696, 920, 1017, 1114, 2305
BseMI	GCAATG	3 cut(s)	704, 958, 2349
BseMII	CTCAG	1 cut(s)	1545
BseNI	ACTGG	5 cut(s)	280, 1118, 1226, 1397, 2299
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	5 cut(s)	917, 994, 1888, 1960, 2182
BseYI	CCCAGC	2 cut(s)	446, 1214
BsgI	GTGCAG	1 cut(s)	1732
Bsh1236I	CGCG	3 cut(s)	360, 404, 878
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	5 cut(s)	53, 65, 293, 689, 739
BshNI	GGYRCC	2 cut(s)	254, 2292
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	2012
BsiSI	CCGG	6 cut(s)	77, 355, 383, 465, 557, 847
BslFI	GGGAC	2 cut(s)	1236, 2087
BslI	CCNNNNNNNGG	9 cut(s)	61, 162, 361, 446, 696, 920, 1017, 1114, 2305
BsmAI	GTCTC	2 cut(s)	1588, 2315
BsmFI	GGGAC	2 cut(s)	1236, 2087
BsnI	GGCC	5 cut(s)	53, 65, 293, 689, 739
Bsp119I	TTCGAA	1 cut(s)	674
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	55, 2012
Bsp1407I	TGTACA	2 cut(s)	210, 1814
Bsp143I	GATC	9 cut(s)	559, 724, 767, 910, 1398, 1528, 1546, 1648, 1735
Bsp68I	TCGCGA	1 cut(s)	404
BspANI	GGCC	5 cut(s)	53, 65, 293, 689, 739
BspCNI	CTCAG	1 cut(s)	1546
BspFNI	CGCG	3 cut(s)	360, 404, 878
BspHI	TCATGA	2 cut(s)	1423, 1801
BspLI	GGNNCC	8 cut(s)	53, 66, 153, 256, 1224, 1608, 1989, 2294
BspMAI	CTGCAG	1 cut(s)	1978
BspPI	GGATC	4 cut(s)	567, 775, 905, 1656
BspT104I	TTCGAA	1 cut(s)	674
BspT107I	GGYRCC	2 cut(s)	254, 2292
BsrBI	CCGCTC	1 cut(s)	2035
BsrDI	GCAATG	3 cut(s)	704, 958, 2349
BsrFI	RCCGGY	1 cut(s)	354
BsrGI	TGTACA	2 cut(s)	210, 1814
BsrI	ACTGG	5 cut(s)	280, 1118, 1226, 1397, 2299
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	5 cut(s)	885, 979, 1657, 2068, 2069
BssMI	GATC	9 cut(s)	559, 724, 767, 910, 1398, 1528, 1546, 1648, 1735
BssNAI	GTATAC	1 cut(s)	1624
BssSI	CACGAG	1 cut(s)	2211
BssT1I	CCWWGG	2 cut(s)	885, 979
Bst1107I	GTATAC	1 cut(s)	1624
Bst2BI	CACGAG	1 cut(s)	2211
Bst2UI	CCWGG	3 cut(s)	1293, 1659, 2070
Bst4CI	ACNGT	3 cut(s)	859, 1618, 2230
Bst6I	CTCTTC	5 cut(s)	464, 1269, 1591, 2019, 2049
BstAPI	GCANNNNNTGC	1 cut(s)	706
BstAUI	TGTACA	2 cut(s)	210, 1814
BstBAI	YACGTR	2 cut(s)	144, 2099
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	5 cut(s)	275, 702, 1212, 1465, 1899
BstDEI	CTNAG	2 cut(s)	931, 1554
BstF5I	GGATG	5 cut(s)	171, 1096, 1132, 1752, 2137
BstFNI	CGCG	3 cut(s)	360, 404, 878
BstHHI	GCGC	2 cut(s)	360, 1329
BstKTI	GATC	9 cut(s)	562, 727, 770, 913, 1401, 1531, 1549, 1651, 1738
BstMAI	GTCTC	2 cut(s)	1588, 2315
BstMBI	GATC	9 cut(s)	559, 724, 767, 910, 1398, 1528, 1546, 1648, 1735
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 270, 706, 1460
BstNI	CCWGG	3 cut(s)	1293, 1659, 2070
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	4 cut(s)	464, 1291, 1657, 2068
BstSFI	CTRYAG	2 cut(s)	157, 1974
BstSLI	GKGCMC	1 cut(s)	55
BstUI	CGCG	3 cut(s)	360, 404, 878
BstV1I	GCAGC	5 cut(s)	917, 994, 1888, 1960, 2182
BstV2I	GAAGAC	2 cut(s)	231, 873
BstXI	CCANNNNNNTGG	1 cut(s)	1083
BstZ17I	GTATAC	1 cut(s)	1624
BsuI	GTATCC	1 cut(s)	2057
BsuRI	GGCC	5 cut(s)	53, 65, 293, 689, 739
BtsCI	GGATG	5 cut(s)	171, 1096, 1132, 1752, 2137
BtsI	GCAGTG	2 cut(s)	947, 1720
BtsIMutI	CAGTG	4 cut(s)	947, 1108, 1720, 2306
BtuMI	TCGCGA	1 cut(s)	404
Cac8I	GCNNGC	5 cut(s)	275, 702, 1212, 1465, 1899
CaiI	CAGNNNCTG	3 cut(s)	487, 1007, 1361
CciI	TCATGA	2 cut(s)	1423, 1801
CfoI	GCGC	2 cut(s)	360, 1329
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	8 cut(s)	51, 52, 64, 151, 338, 687, 1223, 1295
CseI	GACGC	2 cut(s)	867, 2234
Csp6I	GTAC	8 cut(s)	211, 232, 250, 349, 965, 1154, 1815, 2293
CspCI	CAANNNNNGTGG	2 cut(s)	1239, 1274
CviQI	GTAC	8 cut(s)	211, 232, 250, 349, 965, 1154, 1815, 2293
DdeI	CTNAG	2 cut(s)	931, 1554
DpnI	GATC	9 cut(s)	561, 726, 769, 912, 1400, 1530, 1548, 1650, 1737
DpnII	GATC	9 cut(s)	559, 724, 767, 910, 1398, 1528, 1546, 1648, 1735
DrdI	GACNNNNNNGTC	1 cut(s)	405
DseDI	GACNNNNNNGTC	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	737
Eam1104I	CTCTTC	5 cut(s)	464, 1269, 1591, 2019, 2049
EarI	CTCTTC	5 cut(s)	464, 1269, 1591, 2019, 2049
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	885, 979
Eco24I	GRGCYC	1 cut(s)	55
Eco32I	GATATC	2 cut(s)	986, 2157
Eco47I	GGWCC	4 cut(s)	151, 338, 1223, 1295
Eco57I	CTGAAG	3 cut(s)	1443, 1890, 1923
Eco72I	CACGTG	1 cut(s)	144
EcoO109I	RGGNCCY	2 cut(s)	64, 151
EcoRI	GAATTC	1 cut(s)	1501
EcoRII	CCWGG	3 cut(s)	1291, 1657, 2068
EcoRV	GATATC	2 cut(s)	986, 2157
EcoT14I	CCWWGG	2 cut(s)	885, 979
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	885, 979
FalI	AAGNNNNNCTT	4 cut(s)	972, 1004, 1313, 1345
FaqI	GGGAC	2 cut(s)	1236, 2087
FauI	CCCGC	1 cut(s)	305
FauNDI	CATATG	2 cut(s)	532, 2113
FbaI	TGATCA	1 cut(s)	1528
FblI	GTMKAC	3 cut(s)	397, 409, 1623
Fnu4HI	GCNGC	7 cut(s)	74, 737, 906, 1008, 1902, 1974, 2196
FokI	GGATG	5 cut(s)	178, 1103, 1139, 1759, 2144
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	7 cut(s)	74, 737, 906, 1008, 1902, 1974, 2196
FspBI	CTAG	1 cut(s)	2318
GlaI	GCGC	2 cut(s)	359, 1328
GluI	GCNGC	7 cut(s)	74, 737, 906, 1008, 1902, 1974, 2196
GsaI	CCCAGC	2 cut(s)	450, 1218
GsuI	CTGGAG	4 cut(s)	251, 263, 1941, 2282
HaeIII	GGCC	5 cut(s)	53, 65, 293, 689, 739
HapII	CCGG	6 cut(s)	77, 355, 383, 465, 557, 847
HgaI	GACGC	2 cut(s)	867, 2234
HhaI	GCGC	2 cut(s)	360, 1329
Hin6I	GCGC	2 cut(s)	358, 1327
HinP1I	GCGC	2 cut(s)	358, 1327
HincII	GTYRAC	4 cut(s)	398, 823, 1870, 2047
HindII	GTYRAC	4 cut(s)	398, 823, 1870, 2047
HindIII	AAGCTT	1 cut(s)	1895
HinfI	GANTC	8 cut(s)	80, 399, 406, 800, 1061, 1599, 2309, 2348
HpaII	CCGG	6 cut(s)	77, 355, 383, 465, 557, 847
HphI	GGTGA	6 cut(s)	118, 968, 1238, 1281, 1335, 1700
Hpy188I	TCNGA	9 cut(s)	90, 286, 338, 547, 729, 805, 1555, 1653, 2127
Hpy188III	TCNNGA	7 cut(s)	268, 403, 503, 1424, 1733, 1802, 2219
Hpy99I	CGWCG	2 cut(s)	399, 419
HpyCH4III	ACNGT	3 cut(s)	859, 1618, 2230
HpyCH4IV	ACGT	4 cut(s)	143, 783, 2098, 2176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 270, 706, 1460
HpyF3I	CTNAG	2 cut(s)	931, 1554
HpySE526I	ACGT	4 cut(s)	143, 783, 2098, 2176
HspAI	GCGC	2 cut(s)	358, 1327
KpnI	GGTACC	1 cut(s)	2296
Ksp22I	TGATCA	1 cut(s)	1528
Kzo9I	GATC	9 cut(s)	559, 724, 767, 910, 1398, 1528, 1546, 1648, 1735
LmnI	GCTCC	3 cut(s)	9, 282, 664
Lsp1109I	GCAGC	5 cut(s)	917, 994, 1888, 1960, 2182
LweI	GCATC	8 cut(s)	982, 994, 1314, 1341, 1348, 1476, 1807, 1990
MaeI	CTAG	1 cut(s)	2318
MaeII	ACGT	4 cut(s)	143, 783, 2098, 2176
MaeIII	GTNAC	5 cut(s)	718, 853, 1103, 1341, 2099
MalI	GATC	9 cut(s)	561, 726, 769, 912, 1400, 1530, 1548, 1650, 1737
MbiI	CCGCTC	1 cut(s)	2035
MboI	GATC	9 cut(s)	559, 724, 767, 910, 1398, 1528, 1546, 1648, 1735
MhlI	GDGCHC	2 cut(s)	55, 2012
MlyI	GAGTC	3 cut(s)	393, 415, 1608
MmeI	TCCRAC	1 cut(s)	1724
Mph1103I	ATGCAT	1 cut(s)	532
MroXI	GAANNNNTTC	2 cut(s)	842, 1453
MseI	TTAA	6 cut(s)	629, 1158, 1484, 1827, 2079, 2259
MslI	CAYNNNNRTG	4 cut(s)	206, 212, 1674, 1803
MspA1I	CMGCKG	4 cut(s)	162, 908, 2042, 2147
MspI	CCGG	6 cut(s)	77, 355, 383, 465, 557, 847
MspR9I	CCNGG	4 cut(s)	466, 1293, 1659, 2070
MvaI	CCWGG	3 cut(s)	1293, 1659, 2070
MvnI	CGCG	3 cut(s)	360, 404, 878
MwoI	GCNNNNNNNGC	4 cut(s)	261, 270, 706, 1460
NciI	CCSGG	1 cut(s)	466
NdeI	CATATG	2 cut(s)	532, 2113
NdeII	GATC	9 cut(s)	559, 724, 767, 910, 1398, 1528, 1546, 1648, 1735
NlaIV	GGNNCC	8 cut(s)	53, 66, 153, 256, 1224, 1608, 1989, 2294
NmuCI	GTSAC	4 cut(s)	853, 1103, 1341, 2099
NruI	TCGCGA	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	674
PagI	TCATGA	2 cut(s)	1423, 1801
PasI	CCCWGGG	1 cut(s)	2069
PciI	ACATGT	1 cut(s)	207
PdmI	GAANNNNTTC	2 cut(s)	842, 1453
PfeI	GAWTC	5 cut(s)	80, 800, 1061, 2309, 2348
PflFI	GACNNNGTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	464
PkrI	GCNGC	7 cut(s)	75, 738, 907, 1009, 1903, 1975, 2197
PleI	GAGTC	3 cut(s)	393, 414, 1607
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	3 cut(s)	393, 414, 1607
Ppu21I	YACGTR	2 cut(s)	144, 2099
PpuMI	RGGWCCY	1 cut(s)	151
PscI	ACATGT	1 cut(s)	207
PshBI	ATTAAT	2 cut(s)	1827, 2079
PsiI	TTATAA	1 cut(s)	2336
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	1291, 1657, 2068
PspCI	CACGTG	1 cut(s)	144
PspFI	CCCAGC	2 cut(s)	446, 1214
PspGI	CCWGG	3 cut(s)	1291, 1657, 2068
PspN4I	GGNNCC	8 cut(s)	53, 66, 153, 256, 1224, 1608, 1989, 2294
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	8 cut(s)	51, 52, 64, 151, 338, 687, 1223, 1295
PspPPI	RGGWCCY	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	1978
PstNI	CAGNNNCTG	3 cut(s)	487, 1007, 1361
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	4 cut(s)	162, 908, 2042, 2147
RruI	TCGCGA	1 cut(s)	404
RsaI	GTAC	8 cut(s)	212, 233, 251, 350, 966, 1155, 1816, 2294
RsaNI	GTAC	8 cut(s)	211, 232, 250, 349, 965, 1154, 1815, 2293
RseI	CAYNNNNRTG	4 cut(s)	206, 212, 1674, 1803
SalI	GTCGAC	1 cut(s)	396
SaqAI	TTAA	6 cut(s)	629, 1158, 1484, 1827, 2079, 2259
SatI	GCNGC	7 cut(s)	74, 737, 906, 1008, 1902, 1974, 2196
Sau3AI	GATC	9 cut(s)	559, 724, 767, 910, 1398, 1528, 1546, 1648, 1735
Sau96I	GGNCC	8 cut(s)	51, 52, 64, 151, 338, 687, 1223, 1295
SchI	GAGTC	3 cut(s)	393, 415, 1608
ScrFI	CCNGG	4 cut(s)	466, 1293, 1659, 2070
SduI	GDGCHC	2 cut(s)	55, 2012
SfaNI	GCATC	8 cut(s)	982, 994, 1314, 1341, 1348, 1476, 1807, 1990
SfcI	CTRYAG	2 cut(s)	157, 1974
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	4 cut(s)	151, 338, 1223, 1295
SmiMI	CAYNNNNRTG	4 cut(s)	206, 212, 1674, 1803
SmlI	CTYRAG	2 cut(s)	657, 968
SmoI	CTYRAG	2 cut(s)	657, 968
SspI	AATATT	2 cut(s)	1417, 2122
SspMI	CTAG	1 cut(s)	2318
StyD4I	CCNGG	4 cut(s)	464, 1291, 1657, 2068
StyI	CCWWGG	2 cut(s)	885, 979
TaaI	ACNGT	3 cut(s)	859, 1618, 2230
TaiI	ACGT	4 cut(s)	146, 786, 2101, 2179
TaqI	TCGA	6 cut(s)	309, 397, 674, 770, 1067, 1698
TatI	WGTACW	4 cut(s)	210, 231, 348, 1814
TauI	GCSGC	2 cut(s)	76, 739
TfiI	GAWTC	5 cut(s)	80, 800, 1061, 2309, 2348
Tru1I	TTAA	6 cut(s)	629, 1158, 1484, 1827, 2079, 2259
Tru9I	TTAA	6 cut(s)	629, 1158, 1484, 1827, 2079, 2259
TscAI	CASTG	4 cut(s)	947, 1108, 1720, 2306
TseFI	GTSAC	4 cut(s)	853, 1103, 1341, 2099
TseI	GCWGC	5 cut(s)	905, 1007, 1901, 1973, 2195
Tsp45I	GTSAC	4 cut(s)	853, 1103, 1341, 2099
TspRI	CASTG	4 cut(s)	947, 1108, 1720, 2306
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	4 cut(s)	151, 338, 1223, 1295
VspI	ATTAAT	2 cut(s)	1827, 2079
XapI	RAATTY	5 cut(s)	332, 631, 676, 1284, 1501
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmiI	GTMKAC	3 cut(s)	397, 409, 1623
XmnI	GAANNNNTTC	2 cut(s)	842, 1453
XspI	CTAG	1 cut(s)	2318
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.