Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004382

Physical Location & Seq

Genomic Coordinates Reverse (-)

40721145 .. 40724968

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGACAAGGTCGCCATGCGACACATGGACATGTACATGGAACAGGAAGACAAGTACACCGAAGCTTTCATGTACGGCACCGACCGCCTCCAAAGCAAGCTCCAGTCCGAGATGGCCTCCCGCTTATCCTTCGACCTCTCCACTCCTCCCCTCAAATTCGGACCATGGTTGTCCTAAGCAGTTTCCGGTGCTGTGTCGTCGACTTGCGAGTTTACACGACGAGTTCATTTCTCATAAGTCGCCTTCTGCTGGGTTTGATTTTACTTCCGGGAAGAGAATTGAGCAGAAGCTGATTGATTACAATCAAGAAGCTCAAAGATTTGGAGGTTATGCATATGAAGAATTATCGGAAGTTTCGCCGGATCATCGGTTTATTGCTTATACAATGTATGATAAAGACAAGGACTTGTTTAGGTTGTCTGTTAGGAACTTGAATTCTGGTGCATTGTGTAGTAAGCCTCAAGCAGAGCGTGTTTCGAATTTGGCTTGGGCCAAAGACGGGCAGGCATTGCTTTATGTTGTTACCGATCAGAACAAGCGGCCATATAGGATGTATTGTAGCATGATTGGATCGACTGATGAGGACGTTTTGGTTTTTGAAGAATCGGATAATAATGTGTTTGTCAACATTAGACACACGAAAGATTTCCGGTTTGTGACTGTAAATACCTTCTCTACCGCGTCTTCCAAGGTCTTTTTGATAAATGCAGCTGAGCCATTGTCGGGGTTGAACTTAGTTTGGCAGTGTGAAGGTATAGCGCATTGCGTACTTGAGCATCACCAAGGATATTTTTTTCTGTTTACAGATGCTGCCAAAGGAGGGCAGTCAGTTGATAACCATTATCTCCTTCGTAGTCCTGTGGATTCTTTGAGCAGTCCAAGAATATGGGAGGATGTATTCGTCAGTGACCCAGACTGGGTTTTTGAGGATGTGGATTTCAGTCATACACACTTGGTACTTAATATAAGGAAAGGGCGAAACTTTAGACTTTGTTCTGTTGCTTTACCTTTACCTGCTGGGAAGGGACCAGTTCATCTAAAAGAGCTTCACCCACAATTCTTGCCTCTTCCAAAATATGTTTCGCAAATTTCACCTGGACCAAATTATGACTACCATTCATCAAAGATGCGCTTTACAATATCGTCACCTGTGATGCCAGATGCTGTGGTTGATTATGACCTGTCAAATGGAAACTGGAAGATCATTCAACAGCAGAATATTCTTCATGAAAGAACAAAGGTTTTGTATGGAACAGCTTCTTCAGCAAGCATCAGCGAGAAAACCTTAAATACAGATAATTTGAATTCTGCAAATGAAGTCAGCCCTGATGATCAGCAGTTGTGGAATGATCTTTCTGAGTTTTATGCTTGTGAACAGCATAATGTCTCTTCTTATGATGGAGTCTTGGTTCCATTGACTGTTGTATACTCTTGCAAAAACAAGAAAGAGGATCAGAACCCTGGATTGCTTCATGTGCATGGAGCTTATGGTGAGCTACTCGATAAAAGGTGGCGCAGTGAGTTGAAAAGCCTTCTTGATCGTGGTTGGATGGTTGCCTATACTGATGTTAGAGGTGGAGGCGGTGGAGGTAAGAAGTGGCATCATGATGGAAGATGTACAATGAAGATTAATTCCATCAAGGATTTTATAGCCTGTGCCAATTTCCTTGTTGACAAAGAAATTGTCCATGAAGAAAAGCTCGCTGCTGCAGGTTATAGTGCTGGAGGACTAGTAGTTGCTTCAGCCATCAATCAATGCCCACATTTGTTTACTGCTGCAGTTTTGAAGGTTCTGTTTTTAGATGCAACGAGCACTCTTCTCTATCCCATTATACCGCTCACAGCTGTTGACTATGAAGAGTTTGGATACCCTGGGGACATTAATGATTTTCATGCTATACGTGACTATTCTCCATACGACAATATTCAGAAGGATGTTCTCTATCCAGCTGTATTGATATCCTCGTCTTTCAATACACGTTTTGGAGTGTGGGAAGCTGCAAAATGGGTTGCACGAGTTCGTGAACTTACAGTTTACGACCCAAAGCGTCCAATACTGCTTAATTTGACAACAGACATAGTAGAGGAAAACAGGTACCTCCAGTGCAAGGAATCGGCTCTAGAGACTGCATTTCTTATAAAGGCAATGGAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

719

Amino Acids

80.82

Weight (kDa)

6.1

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S9_N	PF02897	84 - 405	7.8e-24	Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9	PF00326	506 - 675	5.1e-33	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66960
fragaria_vesca	FvH4_1g14740 FvH4_1g14740 FvH4_1g14740 FvH4_1g14740 FvH4_1g14740
malus_domestica	MD15G1274800.v1.1
prunus_persica	Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1 Prupe.7G143000_v2.0.a1
pyrus_communis	pycom15g23790
rosa_chinensis	RchiOBHm_Chr1g0319111 RchiOBHm_Chr2g0103681
rosa_laevigata	RLG00000017248 RLG00000029580 RLG00000030483
rosa_multiflora	Rmu_sc0001852.1_g000011 Rmu_sc0003574.1_g000010 Rmu_sc0009469.1_g000007
rosa_roxburghii	Rroxscaffold_2G00139490 Rroxscaffold_4G00328470
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh1AG038700 Rh2AG165200 Rh2BG172400 Rh2CG171300 Rh2DG170800 Rh5CG361300
rosa_wichuraiana	Rw1G003040 Rw2G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2138
Acc36I	ACCTGC	2 cut(s)	1021, 1700
Acc65I	GGTACC	1 cut(s)	2094
AccB1I	GGYRCC	2 cut(s)	76, 2094
AccBSI	CCGCTC	1 cut(s)	1837
AccI	GTMKAC	2 cut(s)	199, 1425
AccII	CGCG	1 cut(s)	680
AciI	CCGC	6 cut(s)	84, 120, 538, 678, 1581, 1835
AclWI	GGATC	3 cut(s)	369, 577, 1458
AcoI	YGGCCR	1 cut(s)	539
AcsI	RAATTY	5 cut(s)	154, 433, 478, 1086, 1303
AcuI	CTGAAG	2 cut(s)	1245, 1725
AfaI	GTAC	7 cut(s)	34, 55, 73, 768, 957, 1618, 2096
AfiI	CCNNNNNNNGG	6 cut(s)	248, 498, 722, 819, 916, 2107
AflIII	ACRYGT	2 cut(s)	29, 1976
AgsI	TTSAA	8 cut(s)	433, 599, 730, 1208, 1303, 1525, 1786, 1972
AhlI	ACTAGT	1 cut(s)	1729
AjnI	CCWGG	3 cut(s)	1093, 1459, 1870
AjuI	GAANNNNNNNTTGG	2 cut(s)	1063, 1095
AloI	GAACNNNNNNTCC	2 cut(s)	1392, 1424
Alw21I	GWGCWC	1 cut(s)	1814
Alw26I	GTCTC	2 cut(s)	1390, 2117
AlwI	GGATC	3 cut(s)	369, 577, 1458
AlwNI	CAGNNNCTG	3 cut(s)	289, 809, 1163
AoxI	GGCC	3 cut(s)	113, 489, 539
ApeKI	GCWGC	6 cut(s)	707, 809, 1703, 1706, 1775, 1997
ApoI	RAATTY	5 cut(s)	154, 433, 478, 1086, 1303
ArsI	GACNNNNNNTTYG	4 cut(s)	905, 937, 1668, 1700
AseI	ATTAAT	2 cut(s)	1629, 1881
Asp700I	GAANNNNTTC	2 cut(s)	644, 1255
Asp718I	GGTACC	1 cut(s)	2094
AspLEI	GCGC	3 cut(s)	760, 1131, 1515
AspS9I	GGNCC	4 cut(s)	160, 489, 1025, 1097
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	5 cut(s)	770, 1040, 1083, 1137, 1502
AsuII	TTCGAA	1 cut(s)	476
AvaII	GGWCC	3 cut(s)	160, 1025, 1097
BanI	GGYRCC	2 cut(s)	76, 2094
BauI	CACGAG	1 cut(s)	2013
BbsI	GAAGAC	2 cut(s)	53, 675
Bbv12I	GWGCWC	1 cut(s)	1814
BbvI	GCAGC	6 cut(s)	719, 796, 1690, 1693, 1762, 1984
BccI	CCATC	6 cut(s)	105, 1391, 1543, 1601, 1643, 1754
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	1 cut(s)	2133
BciT130I	CCWGG	3 cut(s)	1095, 1461, 1872
BciVI	GTATCC	1 cut(s)	1859
BclI	TGATCA	1 cut(s)	1330
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	1390, 2117
BcuI	ACTAGT	1 cut(s)	1729
BfaI	CTAG	2 cut(s)	1730, 2120
BfmI	CTRYAG	2 cut(s)	1707, 1776
BfuAI	ACCTGC	2 cut(s)	1021, 1700
BfuI	GTATCC	1 cut(s)	1859
BisI	GCNGC	7 cut(s)	539, 708, 810, 1704, 1707, 1776, 1998
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	7 cut(s)	540, 709, 811, 1705, 1708, 1777, 1999
Bme1390I	CCNGG	4 cut(s)	268, 1095, 1461, 1872
Bme18I	GGWCC	3 cut(s)	160, 1025, 1097
BmgT120I	GGNCC	4 cut(s)	160, 489, 1025, 1097
BmiI	GGNNCC	4 cut(s)	78, 1026, 1410, 2096
BmrFI	CCNGG	4 cut(s)	268, 1095, 1461, 1872
BmrI	ACTGGG	1 cut(s)	925
BmsI	GCATC	8 cut(s)	784, 796, 1116, 1143, 1150, 1278, 1609, 1792
BmuI	ACTGGG	1 cut(s)	925
BpiI	GAAGAC	2 cut(s)	53, 675
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpmI	CTGGAG	3 cut(s)	85, 1743, 2084
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	444, 791
BpuMI	CCSGG	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	1901
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	6 cut(s)	163, 687, 781, 1459, 1870, 1871
BsaWI	WCCGGW	2 cut(s)	184, 648
BsaXI	ACNNNNNCTCC	4 cut(s)	1392, 1422, 1716, 1746
Bsc4I	CCNNNNNNNGG	6 cut(s)	248, 498, 722, 819, 916, 2107
Bse1I	ACTGG	5 cut(s)	102, 920, 1028, 1199, 2101
Bse3DI	GCAATG	3 cut(s)	506, 760, 2151
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	3 cut(s)	1095, 1461, 1872
BseDI	CCNNGG	6 cut(s)	163, 687, 781, 1459, 1870, 1871
BseGI	GGATG	5 cut(s)	555, 898, 934, 1554, 1939
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	6 cut(s)	248, 498, 722, 819, 916, 2107
BseMI	GCAATG	3 cut(s)	506, 760, 2151
BseMII	CTCAG	2 cut(s)	702, 1347
BseNI	ACTGG	5 cut(s)	102, 920, 1028, 1199, 2101
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	6 cut(s)	719, 796, 1690, 1693, 1762, 1984
BseYI	CCCAGC	2 cut(s)	248, 1016
Bsh1236I	CGCG	1 cut(s)	680
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	115, 491, 541
BshNI	GGYRCC	2 cut(s)	76, 2094
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	1814
BsiSI	CCGG	4 cut(s)	185, 267, 359, 649
BslFI	GGGAC	2 cut(s)	1038, 1889
BslI	CCNNNNNNNGG	6 cut(s)	248, 498, 722, 819, 916, 2107
BsmAI	GTCTC	2 cut(s)	1390, 2117
BsmFI	GGGAC	2 cut(s)	1038, 1889
BsnI	GGCC	3 cut(s)	115, 491, 541
Bsp119I	TTCGAA	1 cut(s)	476
Bsp1286I	GDGCHC	1 cut(s)	1814
Bsp1407I	TGTACA	2 cut(s)	32, 1616
Bsp143I	GATC	8 cut(s)	361, 526, 569, 1200, 1330, 1348, 1450, 1537
Bsp1720I	GCTNAGC	1 cut(s)	711
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	6 cut(s)	84, 120, 538, 678, 1581, 1835
BspANI	GGCC	3 cut(s)	115, 491, 541
BspCNI	CTCAG	2 cut(s)	703, 1348
BspFNI	CGCG	1 cut(s)	680
BspHI	TCATGA	2 cut(s)	1225, 1603
BspLI	GGNNCC	4 cut(s)	78, 1026, 1410, 2096
BspMAI	CTGCAG	2 cut(s)	1711, 1780
BspMI	ACCTGC	2 cut(s)	1021, 1700
BspPI	GGATC	3 cut(s)	369, 577, 1458
BspT104I	TTCGAA	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	76, 2094
BsrBI	CCGCTC	1 cut(s)	1837
BsrDI	GCAATG	3 cut(s)	506, 760, 2151
BsrGI	TGTACA	2 cut(s)	32, 1616
BsrI	ACTGG	5 cut(s)	102, 920, 1028, 1199, 2101
BssECI	CCNNGG	6 cut(s)	163, 687, 781, 1459, 1870, 1871
BssMI	GATC	8 cut(s)	361, 526, 569, 1200, 1330, 1348, 1450, 1537
BssNAI	GTATAC	1 cut(s)	1426
BssSI	CACGAG	1 cut(s)	2013
BssT1I	CCWWGG	3 cut(s)	163, 687, 781
Bst1107I	GTATAC	1 cut(s)	1426
Bst2BI	CACGAG	1 cut(s)	2013
Bst2UI	CCWGG	3 cut(s)	1095, 1461, 1872
Bst4CI	ACNGT	3 cut(s)	661, 1420, 2032
Bst6I	CTCTTC	5 cut(s)	266, 1071, 1393, 1821, 1851
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstAUI	TGTACA	2 cut(s)	32, 1616
BstBAI	YACGTR	1 cut(s)	1901
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	97, 504, 1267, 1701
BstDEI	CTNAG	4 cut(s)	174, 711, 733, 1356
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	5 cut(s)	555, 898, 934, 1554, 1939
BstFNI	CGCG	1 cut(s)	680
BstHHI	GCGC	3 cut(s)	760, 1131, 1515
BstKTI	GATC	8 cut(s)	364, 529, 572, 1203, 1333, 1351, 1453, 1540
BstMAI	GTCTC	2 cut(s)	1390, 2117
BstMBI	GATC	8 cut(s)	361, 526, 569, 1200, 1330, 1348, 1450, 1537
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 92, 508, 1262, 1474
BstNI	CCWGG	3 cut(s)	1095, 1461, 1872
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	4 cut(s)	266, 1093, 1459, 1870
BstSFI	CTRYAG	2 cut(s)	1707, 1776
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	6 cut(s)	719, 796, 1690, 1693, 1762, 1984
BstV2I	GAAGAC	2 cut(s)	53, 675
BstXI	CCANNNNNNTGG	1 cut(s)	885
BstZ17I	GTATAC	1 cut(s)	1426
BsuI	GTATCC	1 cut(s)	1859
BsuRI	GGCC	3 cut(s)	115, 491, 541
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	5 cut(s)	555, 898, 934, 1554, 1939
BtsI	GCAGTG	2 cut(s)	749, 1522
BtsIMutI	CAGTG	4 cut(s)	749, 910, 1522, 2108
BveI	ACCTGC	2 cut(s)	1021, 1700
Cac8I	GCNNGC	4 cut(s)	97, 504, 1267, 1701
CaiI	CAGNNNCTG	3 cut(s)	289, 809, 1163
CciI	TCATGA	2 cut(s)	1225, 1603
CfoI	GCGC	3 cut(s)	760, 1131, 1515
Cfr13I	GGNCC	4 cut(s)	160, 489, 1025, 1097
CseI	GACGC	2 cut(s)	669, 2036
Csp6I	GTAC	7 cut(s)	33, 54, 72, 767, 956, 1617, 2095
CspCI	CAANNNNNGTGG	2 cut(s)	1041, 1076
CviQI	GTAC	7 cut(s)	33, 54, 72, 767, 956, 1617, 2095
DdeI	CTNAG	4 cut(s)	174, 711, 733, 1356
DpnI	GATC	8 cut(s)	363, 528, 571, 1202, 1332, 1350, 1452, 1539
DpnII	GATC	8 cut(s)	361, 526, 569, 1200, 1330, 1348, 1450, 1537
EaeI	YGGCCR	1 cut(s)	539
Eam1104I	CTCTTC	5 cut(s)	266, 1071, 1393, 1821, 1851
EarI	CTCTTC	5 cut(s)	266, 1071, 1393, 1821, 1851
Eco130I	CCWWGG	3 cut(s)	163, 687, 781
Eco32I	GATATC	1 cut(s)	1959
Eco47I	GGWCC	3 cut(s)	160, 1025, 1097
Eco57I	CTGAAG	2 cut(s)	1245, 1725
EcoRI	GAATTC	2 cut(s)	433, 1303
EcoRII	CCWGG	3 cut(s)	1093, 1459, 1870
EcoRV	GATATC	1 cut(s)	1959
EcoT14I	CCWWGG	3 cut(s)	163, 687, 781
EcoT22I	ATGCAT	1 cut(s)	334
ErhI	CCWWGG	3 cut(s)	163, 687, 781
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FaqI	GGGAC	2 cut(s)	1038, 1889
FauI	CCCGC	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	1330
FblI	GTMKAC	2 cut(s)	199, 1425
Fnu4HI	GCNGC	7 cut(s)	539, 708, 810, 1704, 1707, 1776, 1998
FokI	GGATG	5 cut(s)	562, 905, 941, 1561, 1946
Fsp4HI	GCNGC	7 cut(s)	539, 708, 810, 1704, 1707, 1776, 1998
FspBI	CTAG	2 cut(s)	1730, 2120
GlaI	GCGC	3 cut(s)	759, 1130, 1514
GluI	GCNGC	7 cut(s)	539, 708, 810, 1704, 1707, 1776, 1998
GsaI	CCCAGC	2 cut(s)	252, 1020
GsuI	CTGGAG	3 cut(s)	85, 1743, 2084
HaeIII	GGCC	3 cut(s)	115, 491, 541
HapII	CCGG	4 cut(s)	185, 267, 359, 649
HgaI	GACGC	2 cut(s)	669, 2036
HhaI	GCGC	3 cut(s)	760, 1131, 1515
Hin6I	GCGC	3 cut(s)	758, 1129, 1513
HinP1I	GCGC	3 cut(s)	758, 1129, 1513
HincII	GTYRAC	4 cut(s)	200, 625, 1672, 1849
HindII	GTYRAC	4 cut(s)	200, 625, 1672, 1849
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	5 cut(s)	602, 863, 1401, 2111, 2150
HpaII	CCGG	4 cut(s)	185, 267, 359, 649
HphI	GGTGA	5 cut(s)	770, 1040, 1083, 1137, 1502
Hpy188I	TCNGA	8 cut(s)	108, 160, 349, 531, 607, 1357, 1455, 1929
Hpy188III	TCNNGA	6 cut(s)	305, 1226, 1535, 1604, 2021, 2120
Hpy99I	CGWCG	2 cut(s)	201, 221
HpyAV	CCTTC	9 cut(s)	138, 252, 679, 743, 857, 1015, 1541, 1780, 1924
HpyCH4III	ACNGT	3 cut(s)	661, 1420, 2032
HpyCH4IV	ACGT	3 cut(s)	585, 1900, 1978
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 92, 508, 1262, 1474
HpyF3I	CTNAG	4 cut(s)	174, 711, 733, 1356
HpySE526I	ACGT	3 cut(s)	585, 1900, 1978
HspAI	GCGC	3 cut(s)	758, 1129, 1513
KpnI	GGTACC	1 cut(s)	2098
Ksp22I	TGATCA	1 cut(s)	1330
Kzo9I	GATC	8 cut(s)	361, 526, 569, 1200, 1330, 1348, 1450, 1537
LmnI	GCTCC	2 cut(s)	104, 1481
Lsp1109I	GCAGC	6 cut(s)	719, 796, 1690, 1693, 1762, 1984
LweI	GCATC	8 cut(s)	784, 796, 1116, 1143, 1150, 1278, 1609, 1792
MaeI	CTAG	2 cut(s)	1730, 2120
MaeII	ACGT	3 cut(s)	585, 1900, 1978
MaeIII	GTNAC	5 cut(s)	520, 655, 905, 1143, 1901
MalI	GATC	8 cut(s)	363, 528, 571, 1202, 1332, 1350, 1452, 1539
MbiI	CCGCTC	1 cut(s)	1837
MboI	GATC	8 cut(s)	361, 526, 569, 1200, 1330, 1348, 1450, 1537
MhlI	GDGCHC	1 cut(s)	1814
MlyI	GAGTC	1 cut(s)	1410
MmeI	TCCRAC	1 cut(s)	1526
Mph1103I	ATGCAT	1 cut(s)	334
MroXI	GAANNNNTTC	2 cut(s)	644, 1255
MseI	TTAA	5 cut(s)	960, 1286, 1629, 1881, 2061
MslI	CAYNNNNRTG	4 cut(s)	28, 34, 1476, 1605
MspA1I	CMGCKG	3 cut(s)	710, 1844, 1949
MspI	CCGG	4 cut(s)	185, 267, 359, 649
MspR9I	CCNGG	4 cut(s)	268, 1095, 1461, 1872
MvaI	CCWGG	3 cut(s)	1095, 1461, 1872
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	5 cut(s)	83, 92, 508, 1262, 1474
NciI	CCSGG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	8 cut(s)	361, 526, 569, 1200, 1330, 1348, 1450, 1537
NlaIV	GGNNCC	4 cut(s)	78, 1026, 1410, 2096
NmuCI	GTSAC	4 cut(s)	655, 905, 1143, 1901
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	476
PagI	TCATGA	2 cut(s)	1225, 1603
PasI	CCCWGGG	1 cut(s)	1871
PciI	ACATGT	1 cut(s)	29
PdmI	GAANNNNTTC	2 cut(s)	644, 1255
PfeI	GAWTC	4 cut(s)	602, 863, 2111, 2150
PflFI	GACNNNGTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	7 cut(s)	540, 709, 811, 1705, 1708, 1777, 1999
PleI	GAGTC	1 cut(s)	1409
PpsI	GAGTC	1 cut(s)	1409
Ppu21I	YACGTR	1 cut(s)	1901
PscI	ACATGT	1 cut(s)	29
PshBI	ATTAAT	2 cut(s)	1629, 1881
PsiI	TTATAA	1 cut(s)	2138
Psp6I	CCWGG	3 cut(s)	1093, 1459, 1870
PspFI	CCCAGC	2 cut(s)	248, 1016
PspGI	CCWGG	3 cut(s)	1093, 1459, 1870
PspN4I	GGNNCC	4 cut(s)	78, 1026, 1410, 2096
PspPI	GGNCC	4 cut(s)	160, 489, 1025, 1097
PstI	CTGCAG	2 cut(s)	1711, 1780
PstNI	CAGNNNCTG	3 cut(s)	289, 809, 1163
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	3 cut(s)	710, 1844, 1949
RsaI	GTAC	7 cut(s)	34, 55, 73, 768, 957, 1618, 2096
RsaNI	GTAC	7 cut(s)	33, 54, 72, 767, 956, 1617, 2095
RseI	CAYNNNNRTG	4 cut(s)	28, 34, 1476, 1605
SalI	GTCGAC	1 cut(s)	198
SaqAI	TTAA	5 cut(s)	960, 1286, 1629, 1881, 2061
SatI	GCNGC	7 cut(s)	539, 708, 810, 1704, 1707, 1776, 1998
Sau3AI	GATC	8 cut(s)	361, 526, 569, 1200, 1330, 1348, 1450, 1537
Sau96I	GGNCC	4 cut(s)	160, 489, 1025, 1097
SchI	GAGTC	1 cut(s)	1410
ScrFI	CCNGG	4 cut(s)	268, 1095, 1461, 1872
SduI	GDGCHC	1 cut(s)	1814
SfaNI	GCATC	8 cut(s)	784, 796, 1116, 1143, 1150, 1278, 1609, 1792
SfcI	CTRYAG	2 cut(s)	1707, 1776
SfuI	TTCGAA	1 cut(s)	476
SinI	GGWCC	3 cut(s)	160, 1025, 1097
SmiMI	CAYNNNNRTG	4 cut(s)	28, 34, 1476, 1605
SmlI	CTYRAG	2 cut(s)	459, 770
SmoI	CTYRAG	2 cut(s)	459, 770
SpeI	ACTAGT	1 cut(s)	1729
SsiI	CCGC	6 cut(s)	84, 120, 538, 678, 1581, 1835
SspI	AATATT	2 cut(s)	1219, 1924
SspMI	CTAG	2 cut(s)	1730, 2120
StyD4I	CCNGG	4 cut(s)	266, 1093, 1459, 1870
StyI	CCWWGG	3 cut(s)	163, 687, 781
TaaI	ACNGT	3 cut(s)	661, 1420, 2032
TaiI	ACGT	3 cut(s)	588, 1903, 1981
TaqI	TCGA	5 cut(s)	131, 199, 476, 572, 1500
TatI	WGTACW	3 cut(s)	32, 53, 1616
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	4 cut(s)	602, 863, 2111, 2150
Tru1I	TTAA	5 cut(s)	960, 1286, 1629, 1881, 2061
Tru9I	TTAA	5 cut(s)	960, 1286, 1629, 1881, 2061
TscAI	CASTG	4 cut(s)	749, 910, 1522, 2108
TseFI	GTSAC	4 cut(s)	655, 905, 1143, 1901
TseI	GCWGC	6 cut(s)	707, 809, 1703, 1706, 1775, 1997
Tsp45I	GTSAC	4 cut(s)	655, 905, 1143, 1901
TspRI	CASTG	4 cut(s)	749, 910, 1522, 2108
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	3 cut(s)	160, 1025, 1097
VspI	ATTAAT	2 cut(s)	1629, 1881
XapI	RAATTY	5 cut(s)	154, 433, 478, 1086, 1303
XbaI	TCTAGA	1 cut(s)	2119
XceI	RCATGY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmiI	GTMKAC	2 cut(s)	199, 1425
XmnI	GAANNNNTTC	2 cut(s)	644, 1255
XspI	CTAG	2 cut(s)	1730, 2120
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.