Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017818

Physical Location & Seq

Genomic Coordinates Reverse (-)

36235876 .. 36236609

Gene Structure 734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCATGAGGATATCCATAGCCTCTATGGGAAGAAGGACGTAAACCTAATAATTGTCCTATTTCATAAGCAATCTACATTGGATGGGGGAATGGAGGAGGTTAACTCTTCAATGAGACTAGTCAACAACAAAGTTTTAGACAACGCACCGTGCTCGGTGGTTGTCTTTGTTGATTGCGGGCTCAAGAGCACATTTACAGAGTCGTCCACTAACAACAGCGTCAACAACCACCACCACCATTACGCCATGCTCTTCGCTGGTGGGCCAGTTGACTGGGAGGCATTAGCATATGCATGGAGGATGGCCGAAAACCCTAATGTAAATTTGACTGTTGTGAAATTCATCACTGGTGAAGATACTATGTTTGATTTTCCCGATGAAGATGGGAATGGAATTCTAAAGGCCATGCAAGACAATGAGAGGCAGAAGCTACTAGACGATTATGGGACGAGGGAAAACAGTTTTCTCACCACTAATGTTTGGGCTTTACGACTAAGGCGATTGCCTGGAATTGAAACCAATGGGGGATACATTGGTGTAATCGAGCTTCCTGGCCAATGCGTCGATTCTGGTAGTGCAAAAAGGTATTGCCTCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

201

Amino Acids

22.4

Weight (kDa)

5.22

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_2nd	PF23256	3 - 64	2.9e-08	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	83 - 123	1.2e-06	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017818)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0028811
rosa_laevigata	RLG00000018790 RLG00000034794
rosa_roxburghii	Rroxscaffold_1G00051090 Rroxscaffold_2G00120030
rosa_samantha	Rh1AG072100 Rh1CG071500 Rh2AG308900 Rh2AG434900 Rh2CG420900 Rh5BG200900
rosa_wichuraiana	Rw2G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AcoI	YGGCCR	2 cut(s)	303, 553
AcsI	RAATTY	3 cut(s)	322, 338, 393
AgsI	TTSAA	2 cut(s)	111, 515
AhlI	ACTAGT	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	505, 550
AluBI	AGCT	2 cut(s)	430, 547
AluI	AGCT	2 cut(s)	430, 547
Alw21I	GWGCWC	2 cut(s)	155, 191
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	4 cut(s)	263, 303, 402, 553
ApoI	RAATTY	3 cut(s)	322, 338, 393
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	362, 460
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BalI	TGGCCA	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	183
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
Bbv12I	GWGCWC	2 cut(s)	155, 191
BccI	CCATC	3 cut(s)	77, 295, 377
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BciT130I	CCWGG	2 cut(s)	507, 552
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	109
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	2 cut(s)	119, 434
BfuI	GTATCC	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	507, 552
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	2 cut(s)	507, 552
BmrI	ACTGGG	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpuEI	CTTGAG	1 cut(s)	167
Bse1I	ACTGG	3 cut(s)	266, 278, 352
BseBI	CCWGG	2 cut(s)	507, 552
BseGI	GGATG	2 cut(s)	88, 306
BseNI	ACTGG	3 cut(s)	266, 278, 352
BseRI	GAGGAG	1 cut(s)	110
BshFI	GGCC	4 cut(s)	265, 305, 404, 555
BsiHKAI	GWGCWC	2 cut(s)	155, 191
BslFI	GGGAC	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	4 cut(s)	265, 305, 404, 555
Bsp1286I	GDGCHC	3 cut(s)	155, 183, 191
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	4 cut(s)	265, 305, 404, 555
BspQI	GCTCTTC	1 cut(s)	257
BsrI	ACTGG	3 cut(s)	266, 278, 352
Bst2UI	CCWGG	2 cut(s)	507, 552
Bst4CI	ACNGT	3 cut(s)	150, 331, 461
Bst6I	CTCTTC	2 cut(s)	112, 257
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	88, 306
BstMAI	GTCTC	1 cut(s)	109
BstNI	CCWGG	2 cut(s)	507, 552
BstSCI	CCNGG	2 cut(s)	505, 550
BstXI	CCANNNNNNTGG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	4 cut(s)	265, 305, 404, 555
BtsCI	GGATG	2 cut(s)	88, 306
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	2 cut(s)	208, 550
CviAII	CATG	4 cut(s)	5, 247, 294, 406
CviJI	RGCY	9 cut(s)	21, 181, 265, 305, 404, 430, 485, 547, 555
CviKI_1	RGCY	9 cut(s)	21, 181, 265, 305, 404, 430, 485, 547, 555
DdeI	CTNAG	1 cut(s)	494
EaeI	YGGCCR	2 cut(s)	303, 553
Eam1104I	CTCTTC	2 cut(s)	112, 257
EarI	CTCTTC	2 cut(s)	112, 257
Eco24I	GRGCYC	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	505, 550
EcoRV	GATATC	1 cut(s)	13
EcoT22I	ATGCAT	2 cut(s)	6, 295
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	4 cut(s)	8, 250, 297, 409
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	4 cut(s)	4, 246, 293, 405
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	289
FokI	GGATG	2 cut(s)	95, 313
FriOI	GRGCYC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	119, 434
HaeIII	GGCC	4 cut(s)	265, 305, 404, 555
HgaI	GACGC	2 cut(s)	208, 550
Hin1II	CATG	4 cut(s)	8, 250, 297, 409
HincII	GTYRAC	4 cut(s)	103, 124, 223, 271
HindII	GTYRAC	4 cut(s)	103, 124, 223, 271
HinfI	GANTC	2 cut(s)	200, 566
HpaI	GTTAAC	1 cut(s)	103
HphI	GGTGA	2 cut(s)	362, 460
Hpy166II	GTNNAC	6 cut(s)	43, 103, 124, 207, 223, 271
Hpy188III	TCNNGA	2 cut(s)	184, 374
Hpy8I	GTNNAC	6 cut(s)	43, 103, 124, 207, 223, 271
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	3 cut(s)	150, 331, 461
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	4, 293, 409, 578
HpyF3I	CTNAG	1 cut(s)	494
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	8, 250, 297, 409
KspAI	GTTAAC	1 cut(s)	103
LguI	GCTCTTC	1 cut(s)	257
LpnPI	CCDG	9 cut(s)	243, 259, 279, 333, 492, 519, 537, 555, 564
MaeI	CTAG	2 cut(s)	119, 434
MaeII	ACGT	1 cut(s)	39
MboII	GAAGA	5 cut(s)	43, 99, 244, 365, 392
MhlI	GDGCHC	3 cut(s)	155, 183, 191
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	5 cut(s)	51, 322, 338, 393, 510
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	8 cut(s)	32, 88, 91, 271, 291, 414, 444, 602
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	2 cut(s)	6, 295
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	292
Msp20I	TGGCCA	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	507, 552
MvaI	CCWGG	2 cut(s)	507, 552
NdeI	CATATG	1 cut(s)	289
NlaIII	CATG	4 cut(s)	8, 250, 297, 409
NsiI	ATGCAT	2 cut(s)	6, 295
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	566
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	505, 550
PspGI	CCWGG	2 cut(s)	505, 550
PspPI	GGNCC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	507, 552
SduI	GDGCHC	3 cut(s)	155, 183, 191
SetI	ASST	6 cut(s)	42, 48, 102, 432, 549, 587
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	5 cut(s)	51, 322, 338, 393, 510
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	2 cut(s)	119, 434
StyD4I	CCNGG	2 cut(s)	505, 550
TaaI	ACNGT	3 cut(s)	150, 331, 461
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	543, 564
TasI	AATT	5 cut(s)	51, 322, 338, 393, 510
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	352
TspDTI	ATGAA	3 cut(s)	53, 331, 393
TspRI	CASTG	1 cut(s)	352
XapI	RAATTY	3 cut(s)	322, 338, 393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XspI	CTAG	2 cut(s)	119, 434
Zsp2I	ATGCAT	2 cut(s)	6, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.