RLG00000034794

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017818
Physical Location & Seq
Reverse (-)
54673155 .. 54688933
15779 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034794

Sequence Viewer

Length: 807 bp
ATGAGTCTGACACTTCGCGTCTCATCAAACACTTCACATCTCATCGCTCCGACCATGATCATTGAGCCATTTGAGATTGACCTCGAAGCCGGTCCATGCGAACAAATCCAGTGCCGAATCTACCTTGAAAGTGATGGTATTTCTTCAACGAACAAGATTAAGTATGCCGAATCGGCCCCAAAGCGCAGGGTCAAAGCCCAAGAAGTCATTTTCAAAGTCGTGGTTCTGTCGAGACAGATCGGCCTTGAAGTTGTTGGGGCAGATGCAGCTTGCATAGGCCTTGAAGAAGGTGGGGCAGATGCAGCTTATGCAGGTCTTGCACTTTGCTTAGCAGAACTAGCAGCTTGTTTAGCCCTTGATGACTTTGATGCAGACCTATTTGCATCCAACCTTGATGCCTTCAAGGCAGCCATCTTTTTCTGGACACATTCAAAATATGGCAGTACAACATCGGTCATCCTTTTCATAAATTTGAGAGAGCAGCGTCCTCTCCAGATTGTGAAGGTCTGTGCCAAGTATGTCCCTCTTATCAGCCCAGTTGGCCGTGGCGCGTACAAGATTGTTAGATGTGCAACAGACTCTGAGACAAAAGAAGTGGTTGCAATCAAGAAGATTGAGAATGCATCTGACAATAGGATTGATGCCAAGAGGACGTTCCGAGAGATAAAGCTCCTTTCCCAAATGGATCATGACAATGTAAAGTCAAAACCTTTTGCTTTCATCCACATATCTGATGTTACTTCCTTTGCCAATGTTGGAAATAATCCAGCTACTTGCCTCTTGAAAATAGTGATCCATTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
Pkinase

Protein Analysis

269

Amino Acids

29.33

Weight (kDa)

6.53

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 178 - 233 1e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017818)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0028811
rosa_laevigata RLG00000018790 RLG00000034794
rosa_roxburghii Rroxscaffold_1G00051090 Rroxscaffold_2G00120030
rosa_samantha Rh1AG072100 Rh1CG071500 Rh2AG308900 Rh2AG434900 Rh2CG420900 Rh5BG200900
rosa_wichuraiana Rw2G024900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 302
AccII CGCG 2 cut(s) 18, 551
AclWI GGATC 2 cut(s) 693, 787
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 1 cut(s) 469
AfaI GTAC 2 cut(s) 445, 554
AgsI TTSAA 8 cut(s) 128, 147, 214, 248, 284, 403, 432, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AluBI AGCT 5 cut(s) 269, 305, 344, 670, 770
AluI AGCT 5 cut(s) 269, 305, 344, 670, 770
Alw26I GTCTC 3 cut(s) 25, 226, 578
AlwI GGATC 2 cut(s) 693, 787
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 4 cut(s) 174, 241, 277, 541
ApeKI GCWGC 5 cut(s) 266, 302, 341, 407, 481
ApoI RAATTY 1 cut(s) 469
AspLEI GCGC 2 cut(s) 186, 551
AspS9I GGNCC 2 cut(s) 92, 175
AvaII GGWCC 1 cut(s) 92
BbvI GCAGC 5 cut(s) 278, 314, 353, 419, 493
BccI CCATC 2 cut(s) 128, 419
BceAI ACGGC 1 cut(s) 528
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 3 cut(s) 25, 226, 578
BfaI CTAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 302
BglI GCCNNNNNGGC 3 cut(s) 173, 404, 540
BisI GCNGC 5 cut(s) 267, 303, 342, 408, 482
BlpI GCTNAGC 1 cut(s) 328
BlsI GCNGC 5 cut(s) 268, 304, 343, 409, 483
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 92, 175
BmiI GGNNCC 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 7 cut(s) 253, 289, 358, 385, 392, 631, 632
BmuI ACTGGG 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 544
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 109, 536
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 3 cut(s) 383, 456, 720
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 2 cut(s) 109, 536
BseXI GCAGC 5 cut(s) 278, 314, 353, 419, 493
Bsh1236I CGCG 2 cut(s) 18, 551
BshFI GGCC 4 cut(s) 176, 243, 279, 543
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 506
BsmAI GTCTC 3 cut(s) 25, 226, 578
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 4 cut(s) 176, 243, 279, 543
Bsp143I GATC 4 cut(s) 57, 237, 685, 792
Bsp1720I GCTNAGC 1 cut(s) 328
BspANI GGCC 4 cut(s) 176, 243, 279, 543
BspCNI CTCAG 1 cut(s) 574
BspFNI CGCG 2 cut(s) 18, 551
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 693, 787
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 109, 536
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 544
BssMI GATC 4 cut(s) 57, 237, 685, 792
BstAPI GCANNNNNTGC 2 cut(s) 308, 317
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 328, 582
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 3 cut(s) 383, 456, 720
BstFNI CGCG 2 cut(s) 18, 551
BstHHI GCGC 2 cut(s) 186, 551
BstKTI GATC 4 cut(s) 60, 240, 688, 795
BstMAI GTCTC 3 cut(s) 25, 226, 578
BstMBI GATC 4 cut(s) 57, 237, 685, 792
BstMWI GCNNNNNNNGC 9 cut(s) 173, 266, 302, 308, 317, 338, 350, 404, 540
BstUI CGCG 2 cut(s) 18, 551
BstV1I GCAGC 5 cut(s) 278, 314, 353, 419, 493
BsuRI GGCC 4 cut(s) 176, 243, 279, 543
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 3 cut(s) 383, 456, 720
BtsIMutI CAGTG 1 cut(s) 116
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 1 cut(s) 688
CfoI GCGC 2 cut(s) 186, 551
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 92, 175
CseI GACGC 2 cut(s) 7, 473
Csp6I GTAC 2 cut(s) 444, 553
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 3 cut(s) 55, 96, 689
CviQI GTAC 2 cut(s) 444, 553
DdeI CTNAG 2 cut(s) 328, 582
DpnI GATC 4 cut(s) 59, 239, 687, 794
DpnII GATC 4 cut(s) 57, 237, 685, 792
EaeI YGGCCR 1 cut(s) 541
Eco147I AGGCCT 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 625
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 3 cut(s) 58, 99, 692
FaqI GGGAC 1 cut(s) 506
FatI CATG 3 cut(s) 54, 95, 688
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 5 cut(s) 267, 303, 342, 408, 482
FokI GGATG 3 cut(s) 370, 443, 707
Fsp4HI GCNGC 5 cut(s) 267, 303, 342, 408, 482
FspBI CTAG 1 cut(s) 338
GlaI GCGC 2 cut(s) 185, 550
GluI GCNGC 5 cut(s) 267, 303, 342, 408, 482
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 4 cut(s) 176, 243, 279, 543
HapII CCGG 1 cut(s) 90
HgaI GACGC 2 cut(s) 7, 473
HhaI GCGC 2 cut(s) 186, 551
Hin1II CATG 3 cut(s) 58, 99, 692
Hin6I GCGC 2 cut(s) 184, 549
HinP1I GCGC 2 cut(s) 184, 549
HinfI GANTC 4 cut(s) 4, 117, 170, 578
HpaII CCGG 1 cut(s) 90
Hpy188I TCNGA 6 cut(s) 9, 51, 583, 628, 659, 733
Hpy188III TCNNGA 6 cut(s) 231, 421, 493, 607, 689, 781
HpyAV CCTTC 3 cut(s) 281, 409, 496
HpyCH4IV ACGT 1 cut(s) 653
HpyF10VI GCNNNNNNNGC 9 cut(s) 173, 266, 302, 308, 317, 338, 350, 404, 540
HpyF3I CTNAG 2 cut(s) 328, 582
HpySE526I ACGT 1 cut(s) 653
Hsp92II CATG 3 cut(s) 58, 99, 692
HspAI GCGC 2 cut(s) 184, 549
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 4 cut(s) 57, 237, 685, 792
LmnI GCTCC 2 cut(s) 52, 675
LpnPI CCDG 8 cut(s) 103, 122, 172, 297, 406, 506, 549, 780
Lsp1109I GCAGC 5 cut(s) 278, 314, 353, 419, 493
LweI GCATC 7 cut(s) 253, 289, 358, 385, 392, 631, 632
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 653
MaeIII GTNAC 1 cut(s) 736
MalI GATC 4 cut(s) 59, 239, 687, 794
MboI GATC 4 cut(s) 57, 237, 685, 792
MboII GAAGA 3 cut(s) 135, 296, 622
MluCI AATT 1 cut(s) 469
MlyI GAGTC 2 cut(s) 13, 572
MmeI TCCRAC 3 cut(s) 74, 411, 736
MnlI CCTC 5 cut(s) 92, 498, 534, 642, 788
Mph1103I ATGCAT 1 cut(s) 625
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 693
MspI CCGG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 625
MvnI CGCG 2 cut(s) 18, 551
MwoI GCNNNNNNNGC 9 cut(s) 173, 266, 302, 308, 317, 338, 350, 404, 540
NdeII GATC 4 cut(s) 57, 237, 685, 792
NlaIII CATG 3 cut(s) 58, 99, 692
NlaIV GGNNCC 1 cut(s) 177
NsiI ATGCAT 1 cut(s) 625
PagI TCATGA 1 cut(s) 688
PceI AGGCCT 1 cut(s) 279
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 2 cut(s) 117, 170
PkrI GCNGC 5 cut(s) 268, 304, 343, 409, 483
PleI GAGTC 2 cut(s) 12, 572
PpsI GAGTC 2 cut(s) 12, 572
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 92, 175
PstNI CAGNNNCTG 1 cut(s) 581
RsaI GTAC 2 cut(s) 445, 554
RsaNI GTAC 2 cut(s) 444, 553
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 5 cut(s) 267, 303, 342, 408, 482
Sau3AI GATC 4 cut(s) 57, 237, 685, 792
Sau96I GGNCC 2 cut(s) 92, 175
SchI GAGTC 2 cut(s) 13, 572
SfaNI GCATC 7 cut(s) 253, 289, 358, 385, 392, 631, 632
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 693
Sse9I AATT 1 cut(s) 469
SseBI AGGCCT 1 cut(s) 279
SspMI CTAG 1 cut(s) 338
StuI AGGCCT 1 cut(s) 279
TaiI ACGT 1 cut(s) 656
TaqI TCGA 2 cut(s) 84, 230
TaqII GACCGA 1 cut(s) 442
TasI AATT 1 cut(s) 469
TatI WGTACW 1 cut(s) 443
TfiI GAWTC 2 cut(s) 117, 170
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 116
TseI GCWGC 5 cut(s) 266, 302, 341, 407, 481
TspDTI ATGAA 2 cut(s) 454, 709
TspRI CASTG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 469
XspI CTAG 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.