Rh2AG434900

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017818
Physical Location & Seq
Reverse (-)
64496555 .. 64513184
16630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG434900.1

Sequence Viewer

Length: 528 bp
ATGGAAGATTTGGATTCCACGAACTTTGTTAAGAATCCTCAAAACCTTTCCATAGCGGAGCTCAATCCATTCACTTTACCTAATCGCTATGCATTACTCCAAATCTCCATTATGCTACTGAACTTTACTAAACAGCCTTCTGGGTATGTTCAGTACAATCTTCTGGGTAATTTTTTTCAGATCTCTGCCAAGTATGTCCCTCCTATCAGCCCAGTTAGCCACGGCGCGTACGGGATTGTTTGCTGTGCAACAGACTCTAAGACAAAAGAAGAGGTTGCAATCAAGAAGATTGGGAATGCATTTGACAATAGGATCGATGCCAAGAGGACGCTCCGAGAGATAAAGCTCCTTTCCCATATGGATCATGACAATACTGTGCTAGCCATGTTGCAGCAGCAGCATATGTGGTCAAGTTGTAGTATGAATTATGTAACCATCATAACGCGGCCGACAACATCAAGTGAACTACGTACCTCCGCCGACGTCACCTACCACCTCCGACAACACATATATTCCAACAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
Pkinase

Protein Analysis

175

Amino Acids

19.87

Weight (kDa)

8.42

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 74 - 126 1.1e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017818)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0028811
rosa_laevigata RLG00000018790 RLG00000034794
rosa_roxburghii Rroxscaffold_1G00051090 Rroxscaffold_2G00120030
rosa_samantha Rh1AG072100 Rh1CG071500 Rh2AG308900 Rh2AG434900 Rh2CG420900 Rh5BG200900
rosa_wichuraiana Rw2G024900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
AccII CGCG 2 cut(s) 227, 445
AciI CCGC 3 cut(s) 56, 445, 477
AclWI GGATC 2 cut(s) 320, 369
AcoI YGGCCR 1 cut(s) 446
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 3 cut(s) 155, 230, 472
AluBI AGCT 2 cut(s) 61, 346
AluI AGCT 2 cut(s) 61, 346
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 2 cut(s) 320, 369
AoxI GGCC 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 391, 394, 397
AspLEI GCGC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 478
AsuNHI GCTAGC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 403, 406, 409
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 238
BfaI CTAG 1 cut(s) 380
BglII AGATCT 1 cut(s) 180
BisI GCNGC 4 cut(s) 392, 395, 398, 446
BlsI GCNGC 4 cut(s) 393, 396, 399, 447
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 307
BmtI GCTAGC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 206
Bsa29I ATCGAT 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 212
BseX3I CGGCCG 1 cut(s) 446
BseXI GCAGC 3 cut(s) 403, 406, 409
Bsh1236I CGCG 2 cut(s) 227, 445
Bsh1285I CGRYCG 1 cut(s) 449
BshFI GGCC 1 cut(s) 448
BshVI ATCGAT 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 63
BsiWI CGTACG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 180, 312, 361
BspACI CCGC 3 cut(s) 56, 445, 477
BspANI GGCC 1 cut(s) 448
BspDI ATCGAT 1 cut(s) 315
BspFNI CGCG 2 cut(s) 227, 445
BspHI TCATGA 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 2 cut(s) 320, 369
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 3 cut(s) 180, 312, 361
BssNI GRCGYC 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 483
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 220
BstFNI CGCG 2 cut(s) 227, 445
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 3 cut(s) 183, 315, 364
BstMBI GATC 3 cut(s) 180, 312, 361
BstMCI CGRYCG 1 cut(s) 449
BstMWI GCNNNNNNNGC 2 cut(s) 216, 397
BstSNI TACGTA 1 cut(s) 470
BstUI CGCG 2 cut(s) 227, 445
BstV1I GCAGC 3 cut(s) 403, 406, 409
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BstZI CGGCCG 1 cut(s) 446
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 1 cut(s) 448
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 381
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 227
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 1 cut(s) 337
Csp6I GTAC 3 cut(s) 154, 229, 471
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 3 cut(s) 365, 385, 525
CviJI RGCY 7 cut(s) 61, 136, 210, 219, 346, 383, 448
CviKI_1 RGCY 7 cut(s) 61, 136, 210, 219, 346, 383, 448
CviQI GTAC 3 cut(s) 154, 229, 471
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 182, 314, 363
DpnII GATC 3 cut(s) 180, 312, 361
EaeI YGGCCR 1 cut(s) 446
EagI CGGCCG 1 cut(s) 446
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 1 cut(s) 466
Ecl136II GAGCTC 1 cut(s) 61
EclXI CGGCCG 1 cut(s) 446
Eco105I TACGTA 1 cut(s) 470
Eco24I GRGCYC 1 cut(s) 63
Eco52I CGGCCG 1 cut(s) 446
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoT22I ATGCAT 2 cut(s) 94, 301
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 3 cut(s) 368, 388, 528
FaqI GGGAC 1 cut(s) 182
FatI CATG 3 cut(s) 364, 384, 524
FauNDI CATATG 2 cut(s) 357, 402
Fnu4HI GCNGC 4 cut(s) 392, 395, 398, 446
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 4 cut(s) 392, 395, 398, 446
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 226
GluI GCNGC 4 cut(s) 392, 395, 398, 446
HaeIII GGCC 1 cut(s) 448
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 3 cut(s) 368, 388, 528
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 3 cut(s) 14, 34, 254
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 3 cut(s) 180, 335, 500
Hpy188III TCNNGA 2 cut(s) 283, 365
Hpy8I GTNNAC 1 cut(s) 464
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 2 cut(s) 469, 483
HpyCH4V TGCA 5 cut(s) 92, 248, 278, 299, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 397
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 2 cut(s) 469, 483
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 3 cut(s) 368, 388, 528
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 3 cut(s) 180, 312, 361
LmnI GCTCC 3 cut(s) 58, 336, 351
LpnPI CCDG 3 cut(s) 126, 149, 225
Lsp1109I GCAGC 3 cut(s) 403, 406, 409
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 380
MaeII ACGT 2 cut(s) 469, 483
MaeIII GTNAC 2 cut(s) 430, 484
MalI GATC 3 cut(s) 182, 314, 363
MboI GATC 3 cut(s) 180, 312, 361
MboII GAAGA 4 cut(s) 17, 152, 281, 298
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 2 cut(s) 169, 424
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 6 cut(s) 48, 210, 265, 318, 484, 506
Mph1103I ATGCAT 2 cut(s) 94, 301
MseI TTAA 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 301
MvnI CGCG 2 cut(s) 227, 445
MwoI GCNNNNNNNGC 2 cut(s) 216, 397
NdeI CATATG 2 cut(s) 357, 402
NdeII GATC 3 cut(s) 180, 312, 361
NheI GCTAGC 1 cut(s) 379
NlaIII CATG 3 cut(s) 368, 388, 528
NmuCI GTSAC 1 cut(s) 484
NsiI ATGCAT 2 cut(s) 94, 301
PagI TCATGA 1 cut(s) 364
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 14, 34
Pfl23II CGTACG 1 cut(s) 228
PkrI GCNGC 4 cut(s) 393, 396, 399, 447
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 63
PspLI CGTACG 1 cut(s) 228
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 3 cut(s) 155, 230, 472
RsaNI GTAC 3 cut(s) 154, 229, 471
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 4 cut(s) 392, 395, 398, 446
Sau3AI GATC 3 cut(s) 180, 312, 361
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 1 cut(s) 307
SnaBI TACGTA 1 cut(s) 470
Sse9I AATT 2 cut(s) 169, 424
SsiI CCGC 3 cut(s) 56, 445, 477
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 63
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 2 cut(s) 472, 486
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 169, 424
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 2 cut(s) 14, 34
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 3 cut(s) 391, 394, 397
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 1 cut(s) 437
XspI CTAG 1 cut(s) 380
ZraI GACGTC 1 cut(s) 484
Zsp2I ATGCAT 2 cut(s) 94, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.