Rh1CG071500

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017818
Physical Location & Seq
Forward (+)
14787003 .. 14789274
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG071500.1

Sequence Viewer

Length: 441 bp
ATGTCCCTCCTATCAACCCAGTTGGCCGCAGCGCGTATGGGATTGTTTGACTCTGAGACAAAAGAAGAGGTTGCAATCAAGAAGATTGGGAATGCATTTGACAATAGGATCGATGCCAAGAGGACGCTCCGAGAGATAAAGCTCCTTTCCCTACTTTCTGTATCAATTGCTTCAGGGATTGAAGTACATACACCTGCATATGTTTTACACCGTGATCTGAAACCAAGCAATCTGCTTCTAAATGCAAATTGTGACCTTAAGATTTGTGACTTTGGGCTTGCAAGAACTACATCTGAGAAAGATTTCATGACAGAATATGTTGTCACTCGTTCCGAGCCCCAGAATTACTACTCAATTGTTCTGAATACACTGCAGCTATTGATATTTGGTCAAATGAACATGAAGGAGATGGTTCGGGAAGACAAAAAATGGAGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000165 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006971 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009504 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009861 GO:0009862 GO:0009863 GO:0009867 GO:0009868 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0014070 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031122 GO:0032260 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032870 GO:0033206 GO:0033993 GO:0035556 GO:0035690 GO:0035821 GO:0036211 GO:0042221 GO:0042493 GO:0042539 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045087 GO:0046677 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051321 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052306 GO:0052308 GO:0052552 GO:0052553 GO:0052564 GO:0052572 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071840 GO:0075136 GO:0080026 GO:0097305 GO:0097435 GO:0098542 GO:0140013 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:1902410 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04016 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04138 ko04139 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05206 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 ko05418 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04016 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04138 map04139 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05206 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231 map05418
Pfam Domains
Protein Families
Pkinase

Protein Analysis

146

Amino Acids

16.65

Weight (kDa)

8.44

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 47 - 104 7e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 56 - 110 6.1e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017818)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0028811
rosa_laevigata RLG00000018790 RLG00000034794
rosa_roxburghii Rroxscaffold_1G00051090 Rroxscaffold_2G00120030
rosa_samantha Rh1AG072100 Rh1CG071500 Rh2AG308900 Rh2AG434900 Rh2CG420900 Rh5BG200900
rosa_wichuraiana Rw2G024900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccII CGCG 1 cut(s) 34
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 186
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 2 cut(s) 142, 376
AluI AGCT 2 cut(s) 142, 376
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 29, 373
Asp700I GAANNNNTTC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 41, 385
BccI CCATC 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 371
BfrI CTTAAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 3 cut(s) 27, 30, 374
BlsI GCNGC 3 cut(s) 28, 31, 375
BmrI ACTGGG 1 cut(s) 13
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 19
BseCI ATCGAT 1 cut(s) 111
BseMII CTCAG 2 cut(s) 45, 285
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 41, 385
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 2 cut(s) 108, 214
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 46, 286
BspDI ATCGAT 1 cut(s) 111
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 116
BspTI CTTAAG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 19
BssMI GATC 2 cut(s) 108, 214
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 60
BstAFI CTTAAG 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 54, 294
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 2 cut(s) 111, 217
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 108, 214
BstSFI CTRYAG 1 cut(s) 371
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 41, 385
BstV2I GAAGAC 1 cut(s) 426
Bsu15I ATCGAT 1 cut(s) 111
BsuRI GGCC 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 279
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 34
ClaI ATCGAT 1 cut(s) 111
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 307, 400
CviJI RGCY 5 cut(s) 26, 142, 277, 337, 376
CviKI_1 RGCY 5 cut(s) 26, 142, 277, 337, 376
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 54, 294
DpnI GATC 2 cut(s) 110, 216
DpnII GATC 2 cut(s) 108, 214
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 2 cut(s) 310, 403
FaiI YATR 7 cut(s) 38, 189, 199, 201, 308, 318, 401
FatI CATG 2 cut(s) 306, 399
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 27, 30, 374
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 3 cut(s) 27, 30, 374
GlaI GCGC 1 cut(s) 33
GluI GCNGC 3 cut(s) 27, 30, 374
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 310, 403
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 50
Hpy188I TCNGA 6 cut(s) 55, 131, 219, 295, 334, 363
Hpy188III TCNNGA 3 cut(s) 79, 307, 416
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 6 cut(s) 74, 95, 197, 245, 281, 373
HpyF3I CTNAG 2 cut(s) 54, 294
Hsp92II CATG 2 cut(s) 310, 403
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 2 cut(s) 108, 214
LmnI GCTCC 2 cut(s) 132, 147
LpnPI CCDG 4 cut(s) 32, 159, 207, 353
Lsp1109I GCAGC 2 cut(s) 41, 385
LweI GCATC 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 251, 266, 322
MalI GATC 2 cut(s) 110, 216
MboI GATC 2 cut(s) 108, 214
MboII GAAGA 3 cut(s) 77, 94, 431
MfeI CAATTG 2 cut(s) 165, 354
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 4 cut(s) 165, 247, 343, 354
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 4 cut(s) 17, 61, 114, 426
Mph1103I ATGCAT 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 258, 439
MspCI CTTAAG 1 cut(s) 257
MunI CAATTG 2 cut(s) 165, 354
Mva1269I GAATGC 1 cut(s) 97
MvnI CGCG 1 cut(s) 34
NdeI CATATG 1 cut(s) 199
NdeII GATC 2 cut(s) 108, 214
NlaIII CATG 2 cut(s) 310, 403
NmuCI GTSAC 3 cut(s) 251, 266, 322
NsiI ATGCAT 1 cut(s) 97
PagI TCATGA 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 202
PctI GAATGC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 302
PkrI GCNGC 3 cut(s) 28, 31, 375
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 375
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 258, 439
SatI GCNGC 3 cut(s) 27, 30, 374
Sau3AI GATC 2 cut(s) 108, 214
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 339
SetI ASST 6 cut(s) 72, 144, 196, 258, 378, 437
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 4 cut(s) 165, 247, 343, 354
SsiI CCGC 1 cut(s) 27
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 111
TasI AATT 4 cut(s) 165, 247, 343, 354
TatI WGTACW 1 cut(s) 184
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 258, 439
Tru9I TTAA 2 cut(s) 258, 439
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 3 cut(s) 251, 266, 322
TseI GCWGC 2 cut(s) 29, 373
Tsp45I GTSAC 3 cut(s) 251, 266, 322
TspDTI ATGAA 3 cut(s) 295, 410, 416
TspRI CASTG 1 cut(s) 375
Vha464I CTTAAG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.