Rh2CG420900

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017818
Physical Location & Seq
Reverse (-)
57485222 .. 57486540
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG420900.1

Sequence Viewer

Length: 318 bp
ATGAGCAAATTTGTTTTTTCTTTTCTTAATTTTGAAGCTAAACAGCCTTCTGGGTATGTTCAGTACAATCTTCTGGGTAATTTTTTTCAGATCTCTGCCAAGTATGTCCCTCCTATCAGCCCAGTTAGCCACGGCGCGTACGGGATTGTTTGCTGTGCAACAGACTCTAAGACAAAAGAAGAGGTTGCAATCAAGAAGATTGGGAATGCATTTGACAATAGGATCGATGCCAAGAGGACGCTCCGAGAGATAAAGCTCCTTTCCCATATGGATCATGACAATGTAAATACTTTCTGTATCAATTGCTGCGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
Pkinase

Protein Analysis

105

Amino Acids

11.77

Weight (kDa)

8.29

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 44 - 98 2.4e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017818)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0028811
rosa_laevigata RLG00000018790 RLG00000034794
rosa_roxburghii Rroxscaffold_1G00051090 Rroxscaffold_2G00120030
rosa_samantha Rh1AG072100 Rh1CG071500 Rh2AG308900 Rh2AG434900 Rh2CG420900 Rh5BG200900
rosa_wichuraiana Rw2G024900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 1 cut(s) 309
AclWI GGATC 2 cut(s) 230, 279
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 2 cut(s) 65, 140
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 2 cut(s) 38, 256
AluI AGCT 2 cut(s) 38, 256
AlwI GGATC 2 cut(s) 230, 279
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 8
AspLEI GCGC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 148
BglII AGATCT 1 cut(s) 90
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 116
Bsa29I ATCGAT 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 122
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 225
BsiWI CGTACG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 90, 222, 271
BspACI CCGC 1 cut(s) 309
BspDI ATCGAT 1 cut(s) 225
BspFNI CGCG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 274
BspPI GGATC 2 cut(s) 230, 279
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 3 cut(s) 90, 222, 271
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 93, 225, 274
BstMBI GATC 3 cut(s) 90, 222, 271
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
Bsu15I ATCGAT 1 cut(s) 225
BsuTUI ATCGAT 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 130
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 64, 139
CviAII CATG 1 cut(s) 275
CviJI RGCY 5 cut(s) 38, 46, 120, 129, 256
CviKI_1 RGCY 5 cut(s) 38, 46, 120, 129, 256
CviQI GTAC 2 cut(s) 64, 139
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 92, 224, 273
DpnII GATC 3 cut(s) 90, 222, 271
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 1 cut(s) 278
FaiI YATR 5 cut(s) 57, 105, 267, 269, 276
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 274
FauI CCCGC 1 cut(s) 302
FauNDI CATATG 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 307
GlaI GCGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 307
HgaI GACGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 90, 245
Hpy188III TCNNGA 2 cut(s) 193, 275
HpyAV CCTTC 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 158, 188, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 90, 222, 271
LmnI GCTCC 2 cut(s) 246, 261
LpnPI CCDG 3 cut(s) 36, 59, 135
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 217
MalI GATC 3 cut(s) 92, 224, 273
MboI GATC 3 cut(s) 90, 222, 271
MboII GAAGA 3 cut(s) 62, 191, 208
MfeI CAATTG 1 cut(s) 301
MflI RGATCY 1 cut(s) 90
MluCI AATT 4 cut(s) 8, 28, 79, 301
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 3 cut(s) 120, 175, 228
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 279
MunI CAATTG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 211
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeI CATATG 1 cut(s) 267
NdeII GATC 3 cut(s) 90, 222, 271
NlaIII CATG 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 211
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 211
Pfl23II CGTACG 1 cut(s) 138
PkrI GCNGC 1 cut(s) 308
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspLI CGTACG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 2 cut(s) 65, 140
RsaNI GTAC 2 cut(s) 64, 139
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 3 cut(s) 90, 222, 271
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 40, 186, 258
SfaNI GCATC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 4 cut(s) 8, 28, 79, 301
SsiI CCGC 1 cut(s) 309
TaqI TCGA 1 cut(s) 225
TasI AATT 4 cut(s) 8, 28, 79, 301
TatI WGTACW 1 cut(s) 63
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 1 cut(s) 306
XapI RAATTY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.