Rh2AG308900

Cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017818
Physical Location & Seq
Reverse (-)
39246954 .. 39247265
312 bp
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UTR
Exon/CDS
Intron
Rh2AG308900.1

Sequence Viewer

Length: 312 bp
ATGAGACTAGTCAACAACAATGTTTTAGACGACGCACCGTGCTCAGTGGCTGTCTTTGTTGATCGCGGGCTCAATAGCACATTTACAAAGTCATCCACCAACAACAGCGTCAACAACCACCGCCACCATTACGCCATGCTCTTTGCTGGTGGGCCAAATGACCGGGAGGCATTAGCATATGCATGGAGGATGGCCAAAAACCCTAATGTAAATTTGACTGTTGTGAAATTCATCGCAGATGAAGATGCTACGTTTGATTTTCCCGATGAGGATATATGGGAACGAAATTCTAAAGGTCATGCAAGACAATGA

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

6.03

Isoelectric Point (pI)

28.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHX17_C PF23259 45 - 86 7.8e-09 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017818)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0028811
rosa_laevigata RLG00000018790 RLG00000034794
rosa_roxburghii Rroxscaffold_1G00051090 Rroxscaffold_2G00120030
rosa_samantha Rh1AG072100 Rh1CG071500 Rh2AG308900 Rh2AG434900 Rh2CG420900 Rh5BG200900
rosa_wichuraiana Rw2G024900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 66, 121
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 3 cut(s) 211, 227, 286
AhlI ACTAGT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 2 cut(s) 152, 192
ApoI RAATTY 3 cut(s) 211, 227, 286
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 164
BalI TGGCCA 1 cut(s) 194
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 1 cut(s) 184
BcnI CCSGG 1 cut(s) 164
BcuI ACTAGT 1 cut(s) 7
BfaI CTAG 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 92, 195
BseMII CTCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 154, 194
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 163
BsnI GGCC 2 cut(s) 154, 194
Bsp1286I GDGCHC 2 cut(s) 44, 72
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 2 cut(s) 66, 121
BspANI GGCC 2 cut(s) 154, 194
BspCNI CTCAG 1 cut(s) 56
BspFNI CGCG 1 cut(s) 66
BssMI GATC 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 39, 220
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 92, 195
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 162
BstUI CGCG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 154, 194
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 92, 195
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 2 cut(s) 41, 97
CviAII CATG 3 cut(s) 136, 183, 299
CviJI RGCY 4 cut(s) 50, 70, 154, 194
CviKI_1 RGCY 4 cut(s) 50, 70, 154, 194
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 3 cut(s) 139, 186, 302
FaiI YATR 7 cut(s) 137, 178, 180, 184, 275, 277, 300
FatI CATG 3 cut(s) 135, 182, 298
FauI CCCGC 1 cut(s) 59
FauNDI CATATG 1 cut(s) 178
FokI GGATG 2 cut(s) 79, 202
FriOI GRGCYC 1 cut(s) 72
FspBI CTAG 1 cut(s) 8
HaeIII GGCC 2 cut(s) 154, 194
HapII CCGG 1 cut(s) 163
HgaI GACGC 2 cut(s) 41, 97
Hin1II CATG 3 cut(s) 139, 186, 302
HincII GTYRAC 2 cut(s) 13, 112
HindII GTYRAC 2 cut(s) 13, 112
HpaII CCGG 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 13, 112
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 13, 112
Hpy99I CGWCG 1 cut(s) 35
HpyCH4III ACNGT 2 cut(s) 39, 220
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 182, 302
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 3 cut(s) 139, 186, 302
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 2 cut(s) 132, 176
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 251
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 44, 72
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 3 cut(s) 211, 227, 286
MluNI TGGCCA 1 cut(s) 194
MnlI CCTC 3 cut(s) 160, 180, 262
Mox20I TGGCCA 1 cut(s) 194
Mph1103I ATGCAT 1 cut(s) 184
MscI TGGCCA 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 181
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 66
NciI CCSGG 1 cut(s) 164
NdeI CATATG 1 cut(s) 178
NdeII GATC 1 cut(s) 61
NlaIII CATG 3 cut(s) 139, 186, 302
NsiI ATGCAT 1 cut(s) 184
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 181
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 2 cut(s) 44, 72
SetI ASST 2 cut(s) 254, 298
SfaNI GCATC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 181
SpeI ACTAGT 1 cut(s) 7
Sse9I AATT 3 cut(s) 211, 227, 286
SsiI CCGC 2 cut(s) 66, 121
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 39, 220
TaiI ACGT 1 cut(s) 254
TasI AATT 3 cut(s) 211, 227, 286
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 220, 255
TspRI CASTG 1 cut(s) 51
XapI RAATTY 3 cut(s) 211, 227, 286
XspI CTAG 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.