Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018663

Physical Location & Seq

Genomic Coordinates Forward (+)

42584710 .. 42585307

Gene Structure 598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGGCTGTAGTGGTGGATGAGGAGGGGGGAGTGATTGGGTGCCCCATATTTTTGAGCTTGAAAATCTTACTCTTGAGCTCAGCTACCGACGAGGAGGAAGAATTGAGTGATGAAATCTGCCTCCACGCGTCCAGATGTGGGAGCCACCGTTTCAGACCGGCGACGGACCAACGGCTCGCCATTGAAGCTGGTGAAGTCCAAACTCCCCAATTTGGGGTTCATTTGGTGAATGATTTTGAAGACGAGTCGGAATTGGATTTTGGGTTCTGGGGGTTTGATTCGGCCGTGCTCAGGGATCTGAGTTTTGGGAATATTTATAATGGCTCGTCGGAAAATGTGCCGGAGCCGCCGCTGTCCTCCCACGCCGGAGGAGACGAGGAAGTTATTACTCCTCCTCAGCACATAGATATGCAGAAACACAGGGAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.88

Weight (kDa)

4.36

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018663)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018907 RLG00000033561 RLG00000034649
rosa_multiflora	Rmu_sc0002060.1_g000016 Rmu_sc0016173.1_g000001
rosa_samantha	Rh1DG012700 Rh3BG135000 Rh3CG137500 Rh7CG307300 Rh7DG165800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	42
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	350, 353
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	285
AfiI	CCNNNNNNNGG	5 cut(s)	141, 215, 216, 217, 294
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	64, 188, 242
AjuI	GAANNNNNNNTTGG	4 cut(s)	204, 236, 246, 278
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
AluBI	AGCT	4 cut(s)	60, 81, 86, 191
AluI	AGCT	4 cut(s)	60, 81, 86, 191
Alw21I	GWGCWC	2 cut(s)	83, 294
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	206, 241
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	83, 294
BbvCI	CCTCAGC	1 cut(s)	399
BceAI	ACGGC	2 cut(s)	191, 272
BcoDI	GTCTC	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	2 cut(s)	350, 353
BlpI	GCTNAGC	1 cut(s)	82
BlsI	GCNGC	2 cut(s)	351, 354
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	44, 146, 348
BpiI	GAAGAC	1 cut(s)	249
Bpu10I	CCTNAGC	2 cut(s)	293, 399
Bpu1102I	GCTNAGC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 215, 216, 217, 294
Bse118I	RCCGGY	1 cut(s)	160
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	5 cut(s)	141, 215, 216, 217, 294
BseMII	CTCAG	4 cut(s)	96, 293, 307, 413
BseRI	GAGGAG	5 cut(s)	38, 110, 384, 387, 387
BseSI	GKGCMC	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	83, 294
BsiSI	CCGG	3 cut(s)	161, 344, 369
BslI	CCNNNNNNNGG	5 cut(s)	141, 215, 216, 217, 294
BsmAI	GTCTC	1 cut(s)	369
BsmBI	CGTCTC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	47, 83, 294
Bsp143I	GATC	1 cut(s)	298
Bsp1720I	GCTNAGC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	350, 353
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	4 cut(s)	95, 294, 306, 412
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	44, 146, 348
BspPI	GGATC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssMI	GATC	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	82, 293, 302, 399
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 349
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	120
DdeI	CTNAG	4 cut(s)	82, 293, 302, 399
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	285
EagI	CGGCCG	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	369
FaiI	YATR	4 cut(s)	50, 321, 407, 413
Fnu4HI	GCNGC	2 cut(s)	350, 353
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	350, 353
GluI	GCNGC	2 cut(s)	350, 353
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	3 cut(s)	161, 344, 369
HgaI	GACGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	248, 281
HpaII	CCGG	3 cut(s)	161, 344, 369
HphI	GGTGA	2 cut(s)	206, 241
Hpy188I	TCNGA	4 cut(s)	158, 253, 303, 334
Hpy188III	TCNNGA	2 cut(s)	76, 135
Hpy99I	CGWCG	3 cut(s)	95, 169, 334
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 349
HpyF3I	CTNAG	4 cut(s)	82, 293, 302, 399
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	144, 346
LpnPI	CCDG	8 cut(s)	148, 174, 177, 256, 280, 357, 382, 409
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	113, 254
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	3 cut(s)	47, 83, 294
MluCI	AATT	3 cut(s)	104, 212, 254
MluI	ACGCGT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	231, 312
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	3 cut(s)	161, 344, 369
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	188, 349
NdeII	GATC	1 cut(s)	298
NlaIV	GGNNCC	3 cut(s)	44, 146, 348
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	351, 354
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	83
PspN4I	GGNNCC	3 cut(s)	44, 146, 348
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	350, 353
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	3 cut(s)	47, 83, 294
SetI	ASST	5 cut(s)	62, 83, 88, 193, 434
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	104, 212, 254
SsiI	CCGC	2 cut(s)	350, 353
SspI	AATATT	1 cut(s)	316
SstI	GAGCTC	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	152
TasI	AATT	3 cut(s)	104, 212, 254
TauI	GCSGC	2 cut(s)	352, 355
TfiI	GAWTC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	129, 212
TspGWI	ACGGA	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.