Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0018663

Physical Location & Seq

Genomic Coordinates Reverse (-)

11416159 .. 11416671

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG135000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTCAGAAACCTCCGCCGCCTCTGCTCCCGTCTTCAGTGGCCGTCCCGCCGCCGGTTCCGGAACAAAGTTGTCATCAAACGGTTCTGGAAAACGAACTCTAAGTGCCAATTCGAGCACGAACCCACTTCCAACAAGTCTTCGTCGACGACGGTTCACCCGAACGGCCAGCTGGGCAGGTCGAAAACTGAGAAGTCCAGGCCTATTCGGGTCACCACTTTCAACGCTACCGGCGAGGAGGAAGAGTTAGGAGGGGGAGTGATTGGGTGCCCCATATTTTTGAGCTTGAAAATCTTGCTCTTGAGCTCGGCTACCGGCGAGGAGGAAGAGTTAGGAGGGGGAGTGATTGGGTGCCCCATATTTTTGAGCTTGAAAATCTTGCTCTTGAGCTCGGCTACCGGTGAGGAGGAAGAGTTGAGTGATGAAATCTGCCTCCACGCGTCCAGATGTGGGAGCCACCGTTTCAGACCGTTGACTAACCAACGGCTTGCCATTGAAGCTGGTGAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

170

Amino Acids

18.97

Weight (kDa)

9.21

Isoelectric Point (pI)

66.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018663)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018907 RLG00000033561 RLG00000034649
rosa_multiflora	Rmu_sc0002060.1_g000016 Rmu_sc0016173.1_g000001
rosa_samantha	Rh1DG012700 Rh3BG135000 Rh3CG137500 Rh7CG307300 Rh7DG165800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	168
AccB1I	GGYRCC	2 cut(s)	267, 351
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	440
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	4 cut(s)	16, 19, 49, 52
AcoI	YGGCCR	2 cut(s)	41, 166
AcuI	CTGAAG	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	54, 450
AflIII	ACRYGT	1 cut(s)	438
AgeI	ACCGGT	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	223, 289, 373, 497
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	6 cut(s)	172, 285, 306, 369, 390, 500
AluI	AGCT	6 cut(s)	172, 285, 306, 369, 390, 500
Alw21I	GWGCWC	3 cut(s)	120, 308, 392
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	3 cut(s)	41, 166, 200
AsiGI	ACCGGT	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	149, 205, 413
BaeGI	GKGCMC	2 cut(s)	272, 356
BanI	GGYRCC	2 cut(s)	267, 351
BanII	GRGCYC	2 cut(s)	308, 392
BbsI	GAAGAC	2 cut(s)	26, 132
Bbv12I	GWGCWC	3 cut(s)	120, 308, 392
BceAI	ACGGC	3 cut(s)	28, 181, 500
BciT130I	CCWGG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	19, 52
BlsI	GCNGC	2 cut(s)	20, 53
Bme1390I	CCNGG	1 cut(s)	199
BmiI	GGNNCC	4 cut(s)	59, 269, 353, 455
BmrFI	CCNGG	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	26, 132
BpuEI	CTTGAG	2 cut(s)	322, 406
BsaWI	WCCGGW	2 cut(s)	60, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 450
Bse118I	RCCGGY	4 cut(s)	54, 230, 314, 398
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	54, 450
BseMII	CTCAG	2 cut(s)	19, 180
BseRI	GAGGAG	3 cut(s)	251, 335, 419
BseSI	GKGCMC	2 cut(s)	272, 356
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	3 cut(s)	43, 168, 202
BshNI	GGYRCC	2 cut(s)	267, 351
BshTI	ACCGGT	1 cut(s)	398
BsiHKAI	GWGCWC	3 cut(s)	120, 308, 392
BsiSI	CCGG	5 cut(s)	55, 61, 231, 315, 399
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	54, 450
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	3 cut(s)	43, 168, 202
Bsp1286I	GDGCHC	5 cut(s)	120, 272, 308, 356, 392
Bsp13I	TCCGGA	1 cut(s)	60
BspACI	CCGC	4 cut(s)	16, 19, 49, 52
BspANI	GGCC	3 cut(s)	43, 168, 202
BspCNI	CTCAG	2 cut(s)	18, 181
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	4 cut(s)	59, 269, 353, 455
BspMI	ACCTGC	1 cut(s)	168
BspT107I	GGYRCC	2 cut(s)	267, 351
BsrFI	RCCGGY	4 cut(s)	54, 230, 314, 398
BssAI	RCCGGY	4 cut(s)	54, 230, 314, 398
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	4 cut(s)	84, 154, 461, 471
Bst6I	CTCTTC	3 cut(s)	237, 321, 405
BstC8I	GCNNGC	2 cut(s)	170, 489
BstDEI	CTNAG	3 cut(s)	5, 102, 189
BstEII	GGTNACC	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 174, 497
BstNI	CCWGG	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	197
BstSLI	GKGCMC	2 cut(s)	272, 356
BstUI	CGCG	1 cut(s)	440
BstV2I	GAAGAC	2 cut(s)	26, 132
BsuRI	GGCC	3 cut(s)	43, 168, 202
BtsIMutI	CAGTG	1 cut(s)	44
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	170, 489
Cfr10I	RCCGGY	4 cut(s)	54, 230, 314, 398
CseI	GACGC	1 cut(s)	429
CspAI	ACCGGT	1 cut(s)	398
DdeI	CTNAG	3 cut(s)	5, 102, 189
EaeI	YGGCCR	2 cut(s)	41, 166
Eam1104I	CTCTTC	3 cut(s)	237, 321, 405
EarI	CTCTTC	3 cut(s)	237, 321, 405
EciI	GGCGGA	1 cut(s)	5
Ecl136II	GAGCTC	2 cut(s)	306, 390
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	308, 392
Eco53kI	GAGCTC	2 cut(s)	306, 390
Eco57I	CTGAAG	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	211
EcoICRI	GAGCTC	2 cut(s)	306, 390
EcoO65I	GGTNACC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	308, 392
FaiI	YATR	2 cut(s)	275, 359
FaqI	GGGAC	1 cut(s)	31
FauI	CCCGC	1 cut(s)	56
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	19, 52
FriOI	GRGCYC	2 cut(s)	308, 392
Fsp4HI	GCNGC	2 cut(s)	19, 52
GluI	GCNGC	2 cut(s)	19, 52
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	43, 168, 202
HapII	CCGG	5 cut(s)	55, 61, 231, 315, 399
HgaI	GACGC	1 cut(s)	429
HincII	GTYRAC	2 cut(s)	147, 474
HindII	GTYRAC	2 cut(s)	147, 474
HpaII	CCGG	5 cut(s)	55, 61, 231, 315, 399
HphI	GGTGA	3 cut(s)	149, 205, 413
Hpy166II	GTNNAC	3 cut(s)	147, 157, 474
Hpy188I	TCNGA	2 cut(s)	8, 467
Hpy188III	TCNNGA	5 cut(s)	61, 88, 301, 385, 444
Hpy8I	GTNNAC	3 cut(s)	147, 157, 474
Hpy99I	CGWCG	3 cut(s)	148, 151, 154
HpyCH4III	ACNGT	4 cut(s)	84, 154, 461, 471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 174, 497
HpyF3I	CTNAG	3 cut(s)	5, 102, 189
Kpn2I	TCCGGA	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	32, 453
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	26, 132, 254, 338, 422
MhlI	GDGCHC	5 cut(s)	120, 272, 308, 356, 392
MluCI	AATT	1 cut(s)	110
MluI	ACGCGT	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	5 cut(s)	55, 61, 231, 315, 399
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	24, 174, 497
NlaIV	GGNNCC	4 cut(s)	59, 269, 353, 455
NmeAIII	GCCGAG	2 cut(s)	287, 371
NmuCI	GTSAC	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 231
PinAI	ACCGGT	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	20, 53
Psp124BI	GAGCTC	2 cut(s)	308, 392
Psp6I	CCWGG	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	4 cut(s)	59, 269, 353, 455
PvuII	CAGCTG	1 cut(s)	172
SacI	GAGCTC	2 cut(s)	308, 392
SalI	GTCGAC	1 cut(s)	145
SatI	GCNGC	2 cut(s)	19, 52
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	5 cut(s)	120, 272, 308, 356, 392
SetI	ASST	8 cut(s)	15, 174, 182, 287, 308, 371, 392, 502
SgrDI	CGTCGACG	1 cut(s)	145
SmlI	CTYRAG	2 cut(s)	301, 385
SmoI	CTYRAG	2 cut(s)	301, 385
Sse9I	AATT	1 cut(s)	110
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	4 cut(s)	16, 19, 49, 52
SstI	GAGCTC	2 cut(s)	308, 392
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	4 cut(s)	84, 154, 461, 471
TaqI	TCGA	3 cut(s)	114, 146, 182
TasI	AATT	1 cut(s)	110
TauI	GCSGC	2 cut(s)	21, 54
TscAI	CASTG	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.