Rmu_sc0002060.1_g000016

Endonuclease/Exonuclease/phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002060.1
OG0018663
Physical Location & Seq
Forward (+)
63169 .. 63453
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002060.1_g000016.1.cds

Sequence Viewer

Length: 285 bp
atgctcaaaaacctccgccgcctctgctccagtctccgatggtcgtcccgccgccggtccaggaataaagtcgtcatcaaacggttctggaaaatgaactccaagtcccaatttgagcacgaacccacttccaacgggtcgtcgtcggcgacggttcaccccaatggccagctgggcgggtcagaaactgagaagtctaggcctatttgggtcgccactttcaacgacgccctgttctcaatggcgccggcgattcagacgccggagaaaatcgagcaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

94

Amino Acids

10.76

Weight (kDa)

10.63

Isoelectric Point (pI)

87.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 5 cut(s) 16, 19, 49, 52, 177
AcoI YGGCCR 1 cut(s) 166
AcyI GRCGYC 3 cut(s) 228, 245, 260
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 59
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 2 cut(s) 166, 200
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 168
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 19, 52
BlsI GCNGC 2 cut(s) 20, 53
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 13
BsaHI GRCGYC 3 cut(s) 228, 245, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse118I RCCGGY 2 cut(s) 54, 247
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 168, 202
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 3 cut(s) 55, 248, 263
BslFI GGGAC 2 cut(s) 31, 91
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 31, 91
BsnI GGCC 2 cut(s) 168, 202
Bsp1286I GDGCHC 1 cut(s) 120
BspACI CCGC 5 cut(s) 16, 19, 49, 52, 177
BspANI GGCC 2 cut(s) 168, 202
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 2 cut(s) 54, 247
BsrI ACTGG 1 cut(s) 30
BssAI RCCGGY 2 cut(s) 54, 247
BssNI GRCGYC 3 cut(s) 228, 245, 260
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 84, 154
BstACI GRCGYC 3 cut(s) 228, 245, 260
BstC8I GCNNGC 2 cut(s) 170, 249
BstDEI CTNAG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 24, 174
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BsuRI GGCC 2 cut(s) 168, 202
Cac8I GCNNGC 2 cut(s) 170, 249
CaiI CAGNNNCTG 1 cut(s) 188
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 2 cut(s) 54, 247
Cfr13I GGNCC 1 cut(s) 57
CseI GACGC 2 cut(s) 236, 268
CviJI RGCY 3 cut(s) 168, 172, 202
CviKI_1 RGCY 3 cut(s) 168, 172, 202
DdeI CTNAG 1 cut(s) 189
DinI GGCGCC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 166
EciI GGCGGA 1 cut(s) 5
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
FaqI GGGAC 2 cut(s) 31, 91
FauI CCCGC 2 cut(s) 56, 170
Fnu4HI GCNGC 2 cut(s) 19, 52
Fsp4HI GCNGC 2 cut(s) 19, 52
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 19, 52
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 13
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 2 cut(s) 168, 202
HapII CCGG 3 cut(s) 55, 248, 263
HgaI GACGC 2 cut(s) 236, 268
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 3 cut(s) 228, 245, 260
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 1 cut(s) 253
HpaII CCGG 3 cut(s) 55, 248, 263
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 38, 184, 258
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 4 cut(s) 145, 148, 154, 230
HpyCH4III ACNGT 2 cut(s) 84, 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 174
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 3 cut(s) 228, 245, 260
HspAI GCGC 1 cut(s) 245
KasI GGCGCC 1 cut(s) 244
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 32
MaeI CTAG 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 1 cut(s) 110
MluNI TGGCCA 1 cut(s) 168
Mly113I GGCGCC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 2 cut(s) 23, 32
Mox20I TGGCCA 1 cut(s) 168
MreI CGCCGGCG 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 247
MscI TGGCCA 1 cut(s) 168
MseI TTAA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 3 cut(s) 55, 248, 263
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 24, 174
NaeI GCCGGC 1 cut(s) 249
NarI GGCGCC 1 cut(s) 245
NgoMIV GCCGGC 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 246
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 2 cut(s) 20, 53
PluTI GGCGCC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 2 cut(s) 19, 52
Sau96I GGNCC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 120
SetI ASST 2 cut(s) 15, 174
SfoI GGCGCC 1 cut(s) 246
SgrAI CRCCGGYG 1 cut(s) 247
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 5 cut(s) 16, 19, 49, 52, 177
SspDI GGCGCC 1 cut(s) 244
SspMI CTAG 1 cut(s) 198
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 84, 154
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 110
TauI GCSGC 2 cut(s) 21, 54
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.