Rh7DG165800

Endonuclease/Exonuclease/phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018663
Physical Location & Seq
Reverse (-)
14843854 .. 14844216
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG165800.1

Sequence Viewer

Length: 363 bp
ATGCTCAGAAACCTTCGCCGCCTCTGCTCCCGTCTCCTGTGGCCGTCCCACTGCCGGTCCCAGAACAAAGTCGTCATCAAACGATTCTGGAAAACTAACTCCAAGTCCCAATTCGAGCACGAACCCACTTCCAACCGGTCGTCGTCGGCGACGGTTCACCCGAACGGCCAGCTGGGCGAGTCGGAAACTGAGAAGTCCAGGCCTATTCGGGTCGCCAATTTCAACGCCGCCATGTTCTCAATGGTGCCGACGATTCCGACGCCGGAGAAAATCGAGCAAGACGAAAATGGCGTCAAGGTCGTAAAGAACATACATTCCAGAATCAACCCCCATGAGGAAAAGAAACAGTTCACCGGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

120

Amino Acids

13.78

Weight (kDa)

10.17

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 2 cut(s) 19, 228
AcoI YGGCCR 2 cut(s) 41, 166
AcyI GRCGYC 2 cut(s) 260, 291
AfiI CCNNNNNNNGG 2 cut(s) 54, 334
AgeI ACCGGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 38
AoxI GGCC 3 cut(s) 41, 166, 200
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AsiGI ACCGGT 1 cut(s) 135
Asp700I GAANNNNTTC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 149, 343
AvaII GGWCC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 120
BceAI ACGGC 2 cut(s) 28, 181
BciT130I CCWGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 19, 228
BlsI GCNGC 2 cut(s) 20, 229
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 59, 246
BmrFI CCNGG 1 cut(s) 199
BsaHI GRCGYC 2 cut(s) 260, 291
BsaWI WCCGGW 2 cut(s) 135, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 334
Bse118I RCCGGY 2 cut(s) 54, 135
BseBI CCWGG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 54, 334
BseMII CTCAG 2 cut(s) 19, 180
BseYI CCCAGC 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 140
BshFI GGCC 3 cut(s) 43, 168, 202
BshNI GGYRCC 1 cut(s) 244
BshTI ACCGGT 1 cut(s) 135
BsiEI CGRYCG 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 4 cut(s) 55, 136, 263, 354
BslFI GGGAC 3 cut(s) 31, 43, 91
BslI CCNNNNNNNGG 2 cut(s) 54, 334
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 3 cut(s) 31, 43, 91
BsnI GGCC 3 cut(s) 43, 168, 202
Bsp1286I GDGCHC 1 cut(s) 120
BspACI CCGC 2 cut(s) 19, 228
BspANI GGCC 3 cut(s) 43, 168, 202
BspCNI CTCAG 2 cut(s) 18, 181
BspLI GGNNCC 2 cut(s) 59, 246
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 2 cut(s) 54, 135
BssAI RCCGGY 2 cut(s) 54, 135
BssNI GRCGYC 2 cut(s) 260, 291
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 154, 348
BstACI GRCGYC 2 cut(s) 260, 291
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 2 cut(s) 5, 189
BstMAI GTCTC 1 cut(s) 38
BstMCI CGRYCG 1 cut(s) 140
BstMWI GCNNNNNNNGC 2 cut(s) 24, 174
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BsuRI GGCC 3 cut(s) 43, 168, 202
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 170
Cfr10I RCCGGY 2 cut(s) 54, 135
Cfr13I GGNCC 1 cut(s) 57
CseI GACGC 2 cut(s) 268, 280
CspAI ACCGGT 1 cut(s) 135
CviAII CATG 2 cut(s) 232, 332
CviJI RGCY 5 cut(s) 43, 168, 172, 202, 360
CviKI_1 RGCY 5 cut(s) 43, 168, 172, 202, 360
DdeI CTNAG 2 cut(s) 5, 189
EaeI YGGCCR 2 cut(s) 41, 166
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 197
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 2 cut(s) 235, 335
FaiI YATR 3 cut(s) 233, 311, 333
FaqI GGGAC 3 cut(s) 31, 43, 91
FatI CATG 2 cut(s) 231, 331
Fnu4HI GCNGC 2 cut(s) 19, 228
Fsp4HI GCNGC 2 cut(s) 19, 228
GluI GCNGC 2 cut(s) 19, 228
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 3 cut(s) 43, 168, 202
HapII CCGG 4 cut(s) 55, 136, 263, 354
HgaI GACGC 2 cut(s) 268, 280
Hin1I GRCGYC 2 cut(s) 260, 291
Hin1II CATG 2 cut(s) 235, 335
HinfI GANTC 4 cut(s) 84, 179, 253, 321
HpaII CCGG 4 cut(s) 55, 136, 263, 354
HphI GGTGA 2 cut(s) 149, 343
Hpy166II GTNNAC 2 cut(s) 157, 351
Hpy188I TCNGA 3 cut(s) 8, 184, 258
Hpy188III TCNNGA 2 cut(s) 88, 318
Hpy8I GTNNAC 2 cut(s) 157, 351
Hpy99I CGWCG 5 cut(s) 145, 148, 154, 253, 262
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 154, 348
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 174
HpyF3I CTNAG 2 cut(s) 5, 189
Hsp92I GRCGYC 2 cut(s) 260, 291
Hsp92II CATG 2 cut(s) 235, 335
LmnI GCTCC 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 110, 217
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 3 cut(s) 156, 162, 281
MnlI CCTC 3 cut(s) 32, 328, 350
MroXI GAANNNNTTC 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 4 cut(s) 55, 136, 263, 354
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 24, 174
NlaIII CATG 2 cut(s) 235, 335
NlaIV GGNNCC 2 cut(s) 59, 246
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 4 cut(s) 146, 158, 279, 288
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 3 cut(s) 84, 253, 321
PinAI ACCGGT 1 cut(s) 135
PkrI GCNGC 2 cut(s) 20, 229
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 59, 246
PspPI GGNCC 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 172
SatI GCNGC 2 cut(s) 19, 228
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 120
SetI ASST 3 cut(s) 15, 174, 300
SinI GGWCC 1 cut(s) 57
Sse9I AATT 2 cut(s) 110, 217
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 19, 228
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 154, 348
TaqI TCGA 2 cut(s) 114, 273
TasI AATT 2 cut(s) 110, 217
TauI GCSGC 2 cut(s) 21, 230
TfiI GAWTC 3 cut(s) 84, 253, 321
TscAI CASTG 1 cut(s) 56
TspRI CASTG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.