Rmu_sc0016173.1_g000001

Endonuclease/Exonuclease/phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016173.1
OG0018663
Physical Location & Seq
Forward (+)
1 .. 277
277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016173.1_g000001.1.cds

Sequence Viewer

Length: 277 bp
gaacaaagttgtcatcaaacggttctggaaaacgaactccaagtcccaattcgagcacgaacccacttccaacaagtcttcttcggcgacggttcacctgaacggccagctgggtaggtcggaaactgagaaatccaggcctattcgggtcaccactttcaacgcctccctgttctcaatggcgccggcgattccgacgccggagaaaatcgagcaagacgaaaatggcgtcaaggtcgtaaagaacataaattccaaagccaagtcggagaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

91

Amino Acids

10.16

Weight (kDa)

9.92

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 1 cut(s) 251
AcyI GRCGYC 3 cut(s) 183, 198, 229
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AloI GAACNNNNNNTCC 4 cut(s) 27, 59, 237, 269
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 58
AoxI GGCC 2 cut(s) 104, 138
ApoI RAATTY 1 cut(s) 251
ArsI GACNNNNNNTTYG 4 cut(s) 27, 59, 214, 246
AspLEI GCGC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 87, 143
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 137
BfaI CTAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 70
BsaHI GRCGYC 3 cut(s) 183, 198, 229
Bse118I RCCGGY 1 cut(s) 185
BseBI CCWGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 2 cut(s) 106, 140
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 186, 201
BslFI GGGAC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 106, 140
Bsp1286I GDGCHC 1 cut(s) 58
BspANI GGCC 2 cut(s) 106, 140
BspCNI CTCAG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssNI GRCGYC 3 cut(s) 183, 198, 229
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 22, 92
BstACI GRCGYC 3 cut(s) 183, 198, 229
BstC8I GCNNGC 2 cut(s) 108, 187
BstDEI CTNAG 1 cut(s) 127
BstEII GGTNACC 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 70
BsuRI GGCC 2 cut(s) 106, 140
Cac8I GCNNGC 2 cut(s) 108, 187
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 185
CseI GACGC 2 cut(s) 206, 218
CviJI RGCY 4 cut(s) 106, 110, 140, 261
CviKI_1 RGCY 4 cut(s) 106, 110, 140, 261
DdeI CTNAG 1 cut(s) 127
DinI GGCGCC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 104
Eco147I AGGCCT 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
FaiI YATR 1 cut(s) 249
FaqI GGGAC 1 cut(s) 29
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 184
GsaI CCCAGC 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 106, 140
HapII CCGG 2 cut(s) 186, 201
HgaI GACGC 2 cut(s) 206, 218
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 3 cut(s) 183, 198, 229
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 1 cut(s) 191
HpaII CCGG 2 cut(s) 186, 201
HphI GGTGA 2 cut(s) 87, 143
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 122, 196, 269
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 2 cut(s) 92, 200
HpyCH4III ACNGT 2 cut(s) 22, 92
HpyF3I CTNAG 1 cut(s) 127
Hsp92I GRCGYC 3 cut(s) 183, 198, 229
HspAI GCGC 1 cut(s) 183
KasI GGCGCC 1 cut(s) 182
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
LpnPI CCDG 9 cut(s) 11, 96, 111, 120, 122, 149, 183, 199, 214
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 149
MboII GAAGA 2 cut(s) 70, 73
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 48, 251
Mly113I GGCGCC 1 cut(s) 183
MmeI TCCRAC 4 cut(s) 94, 100, 219, 247
MnlI CCTC 1 cut(s) 176
MreI CGCCGGCG 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 2 cut(s) 186, 201
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 183
NgoMIV GCCGGC 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 149
PceI AGGCCT 1 cut(s) 140
PcsI WCGNNNNNNNCGW 2 cut(s) 217, 226
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 135
PspEI GGTNACC 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 58
SetI ASST 4 cut(s) 100, 112, 120, 238
SfoI GGCGCC 1 cut(s) 184
SgrAI CRCCGGYG 1 cut(s) 185
Sse9I AATT 2 cut(s) 48, 251
SseBI AGGCCT 1 cut(s) 140
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 22, 92
TaqI TCGA 2 cut(s) 52, 211
TasI AATT 2 cut(s) 48, 251
TfiI GAWTC 1 cut(s) 191
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
XapI RAATTY 1 cut(s) 251
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.