RLG00000033561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018663
Physical Location & Seq
Reverse (-)
28983673 .. 28984472
800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033561

Sequence Viewer

Length: 393 bp
ATGCTCCTTGGATCTGGACGCAATGCAAAAGAAATAAAGGCAATGAATTTACGCTCCTTAGATCTCAATTTTGCTGCAATTAAGCTTAGAAGCATCTTAGTTTCCCCGAGGCCATTACAAAGAAGCTACTGGCCGGAGTTTGAAGAAGGTAAGACCCAATTGGTGGTGGTGGTGGCTGTAGATGATCTCATGGTAGTTGTGGTGGTGGATGAGGAGGAGGAAGTGATTGGGTGCCCCATATTTTTGAGCTTGAAAATCTTGCTCTTGAGCTCAGCTACCGACGTGGAGGAAGAGCTGAGTGATGAAATCTGCCTCCACGCGTCCAGATGTGGGAGCCACCATTTCAGACCGGCGACGAACCAACGACTCGCCATTAAAGCTGGTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.43

Weight (kDa)

5.19

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 231
AccB7I CCANNNNNTGG 1 cut(s) 163
AccII CGCG 1 cut(s) 320
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 131
AcsI RAATTY 1 cut(s) 46
AfiI CCNNNNNNNGG 2 cut(s) 163, 330
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 2 cut(s) 143, 253
AjiI CACGTC 1 cut(s) 283
AluBI AGCT 7 cut(s) 85, 126, 249, 270, 275, 295, 380
AluI AGCT 7 cut(s) 85, 126, 249, 270, 275, 295, 380
Alw21I GWGCWC 1 cut(s) 272
AlwI GGATC 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 2 cut(s) 110, 131
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 61
BfmI CTRYAG 1 cut(s) 177
BglII AGATCT 1 cut(s) 61
BisI GCNGC 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 283
BmiI GGNNCC 2 cut(s) 233, 335
BmsI GCATC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 7, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 330
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 2 cut(s) 28, 48
BseDI CCNNGG 2 cut(s) 7, 107
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 163, 330
BseMI GCAATG 2 cut(s) 28, 48
BseMII CTCAG 2 cut(s) 285, 287
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 2 cut(s) 227, 230
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 2 cut(s) 112, 133
BshNI GGYRCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 134, 350
BslI CCNNNNNNNGG 2 cut(s) 163, 330
BsnI GGCC 2 cut(s) 112, 133
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 236, 272
Bsp143I GATC 3 cut(s) 11, 61, 184
Bsp1720I GCTNAGC 1 cut(s) 271
BspANI GGCC 2 cut(s) 112, 133
BspCNI CTCAG 2 cut(s) 284, 288
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 233, 335
BspPI GGATC 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 231
BsrDI GCAATG 2 cut(s) 28, 48
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 7, 107
BssMI GATC 3 cut(s) 11, 61, 184
BssT1I CCWWGG 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 285
BstDEI CTNAG 5 cut(s) 58, 86, 97, 271, 296
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 320
BstKTI GATC 3 cut(s) 14, 64, 187
BstMBI GATC 3 cut(s) 11, 61, 184
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 236
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 11, 61
BstYI RGATCY 2 cut(s) 11, 61
BsuRI GGCC 2 cut(s) 112, 133
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 349
CseI GACGC 2 cut(s) 27, 309
CviAII CATG 1 cut(s) 190
DdeI CTNAG 5 cut(s) 58, 86, 97, 271, 296
DpnI GATC 3 cut(s) 13, 63, 186
DpnII GATC 3 cut(s) 11, 61, 184
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 191, 239
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 2 cut(s) 112, 133
HapII CCGG 2 cut(s) 134, 350
HgaI GACGC 2 cut(s) 27, 309
Hin1II CATG 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 366
HpaII CCGG 2 cut(s) 134, 350
Hpy188I TCNGA 1 cut(s) 347
Hpy188III TCNNGA 3 cut(s) 15, 265, 324
Hpy99I CGWCG 2 cut(s) 284, 358
HpyAV CCTTC 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 26, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 5 cut(s) 58, 86, 97, 271, 296
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 3 cut(s) 11, 61, 184
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 3 cut(s) 9, 59, 333
LpnPI CCDG 5 cut(s) 115, 147, 337, 363, 366
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 102
MaeII ACGT 1 cut(s) 282
MalI GATC 3 cut(s) 13, 63, 186
MboI GATC 3 cut(s) 11, 61, 184
MboII GAAGA 2 cut(s) 155, 302
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 2 cut(s) 11, 61
MhlI GDGCHC 2 cut(s) 236, 272
MluCI AATT 4 cut(s) 46, 67, 78, 158
MluI ACGCGT 1 cut(s) 318
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 6 cut(s) 102, 205, 208, 211, 280, 323
MseI TTAA 2 cut(s) 81, 375
MspI CCGG 2 cut(s) 134, 350
MunI CAATTG 1 cut(s) 158
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 3 cut(s) 11, 61, 184
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 233, 335
PciSI GCTCTTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 163
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 233, 335
PsuI RGATCY 2 cut(s) 11, 61
SacI GAGCTC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 81, 375
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 3 cut(s) 11, 61, 184
SchI GAGTC 1 cut(s) 360
SduI GDGCHC 2 cut(s) 236, 272
SetI ASST 9 cut(s) 87, 128, 151, 251, 272, 277, 285, 297, 382
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 4 cut(s) 46, 67, 78, 158
SstI GAGCTC 1 cut(s) 272
StyI CCWWGG 1 cut(s) 7
TaiI ACGT 1 cut(s) 285
TasI AATT 4 cut(s) 46, 67, 78, 158
Tru1I TTAA 2 cut(s) 81, 375
Tru9I TTAA 2 cut(s) 81, 375
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 59, 318
Van91I CCANNNNNTGG 1 cut(s) 163
XapI RAATTY 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.