Rh1DG012700

Endonuclease/Exonuclease/phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018663
Physical Location & Seq
Reverse (-)
2098771 .. 2099544
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG012700.1

Sequence Viewer

Length: 339 bp
ATGCTCAGAAACCTCCGCCGCCTCTACTCCCATCTTTGGTGGCCGTCCCGTCGCCGGTCCCGGAACAAAGTCGTCATCAAACGGTTCTGGAAAATGAACTCCAAGTCCCAATTCGAGCACGAACCCACTTCCAACAAGTCTTCGTCGGCGACGGTTCACCCGAACGGCCAGCTGGGCAGGTCAGAAACTGAGAAGTCCAGGCCTATTCGGGTCACCACTTTCAACGCCACCGGCGAGGAGGAAGAGTTGGGAGGGGGGAGTGATTGGGTGCCCCATATTTTTGAGCTTGAAAATCTTGCTCTTGAGCTCGGCTACCAGCGAGGAGGAAGAGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

112

Amino Acids

13.07

Weight (kDa)

10.18

Isoelectric Point (pI)

79.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 2 cut(s) 16, 19
AcoI YGGCCR 2 cut(s) 41, 166
AfiI CCNNNNNNNGG 2 cut(s) 36, 54
AgsI TTSAA 2 cut(s) 223, 290
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 3 cut(s) 172, 286, 307
AluI AGCT 3 cut(s) 172, 286, 307
Alw21I GWGCWC 2 cut(s) 120, 309
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 3 cut(s) 41, 166, 200
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 149, 205
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 120, 309
BccI CCATC 1 cut(s) 39
BceAI ACGGC 2 cut(s) 28, 181
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 61, 199
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 59, 270
BmrFI CCNGG 2 cut(s) 61, 199
BpiI GAAGAC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 3 cut(s) 230, 260, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 54
Bse118I RCCGGY 2 cut(s) 54, 230
BseBI CCWGG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 36, 54
BseMII CTCAG 2 cut(s) 19, 180
BseRI GAGGAG 2 cut(s) 251, 336
BseSI GKGCMC 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 3 cut(s) 43, 168, 202
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 120, 309
BsiSI CCGG 3 cut(s) 55, 61, 231
BslFI GGGAC 3 cut(s) 31, 43, 91
BslI CCNNNNNNNGG 2 cut(s) 36, 54
BsmFI GGGAC 3 cut(s) 31, 43, 91
BsnI GGCC 3 cut(s) 43, 168, 202
Bsp1286I GDGCHC 3 cut(s) 120, 273, 309
BspACI CCGC 2 cut(s) 16, 19
BspANI GGCC 3 cut(s) 43, 168, 202
BspCNI CTCAG 2 cut(s) 18, 181
BspLI GGNNCC 2 cut(s) 59, 270
BspMI ACCTGC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 268
BsrFI RCCGGY 2 cut(s) 54, 230
BssAI RCCGGY 2 cut(s) 54, 230
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 84, 154
Bst6I CTCTTC 2 cut(s) 237, 322
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 2 cut(s) 5, 189
BstEII GGTNACC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 199
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 59, 197
BstSLI GKGCMC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 3 cut(s) 43, 168, 202
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 170
CaiI CAGNNNCTG 1 cut(s) 188
Cfr10I RCCGGY 2 cut(s) 54, 230
Cfr13I GGNCC 1 cut(s) 57
CviJI RGCY 7 cut(s) 43, 168, 172, 202, 286, 307, 312
CviKI_1 RGCY 7 cut(s) 43, 168, 172, 202, 286, 307, 312
DdeI CTNAG 2 cut(s) 5, 189
EaeI YGGCCR 2 cut(s) 41, 166
Eam1104I CTCTTC 2 cut(s) 237, 322
EarI CTCTTC 2 cut(s) 237, 322
EciI GGCGGA 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 307
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 307
Eco91I GGTNACC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 307
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 309
FaiI YATR 1 cut(s) 276
FaqI GGGAC 3 cut(s) 31, 43, 91
Fnu4HI GCNGC 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 19
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 3 cut(s) 43, 168, 202
HapII CCGG 3 cut(s) 55, 61, 231
HpaII CCGG 3 cut(s) 55, 61, 231
HphI GGTGA 2 cut(s) 149, 205
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 8, 184
Hpy188III TCNNGA 2 cut(s) 88, 302
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 3 cut(s) 54, 148, 154
HpyCH4III ACNGT 2 cut(s) 84, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 5, 189
MaeIII GTNAC 1 cut(s) 211
MboII GAAGA 3 cut(s) 132, 254, 339
MhlI GDGCHC 3 cut(s) 120, 273, 309
MluCI AATT 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 7 cut(s) 23, 32, 229, 232, 245, 314, 317
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 3 cut(s) 55, 61, 231
MspR9I CCNGG 2 cut(s) 61, 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 174
NciI CCSGG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 59, 270
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 158, 231
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 197
PspEI GGTNACC 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 59, 270
PspPI GGNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 172
SacI GAGCTC 1 cut(s) 309
SatI GCNGC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 61, 199
SduI GDGCHC 3 cut(s) 120, 273, 309
SetI ASST 5 cut(s) 15, 174, 182, 288, 309
SgrAI CRCCGGYG 1 cut(s) 230
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 16, 19
SstI GAGCTC 1 cut(s) 309
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 59, 197
TaaI ACNGT 2 cut(s) 84, 154
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 110
TauI GCSGC 1 cut(s) 21
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.