RLG00000034649

Endonuclease/Exonuclease/phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018663
Physical Location & Seq
Forward (+)
47058997 .. 47061394
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034649

Sequence Viewer

Length: 435 bp
ATGCTCAGAAACCTCCGCCGCCTCTGCTCCCGTCTCCTGTGGCCGTCCCGCCGCCTATCCAGGAACAAAGTCATCATCAAACGGTTCTGGAAAACGAACTCGAAGTCCCAATTCGAGCACGAACCCACTTCCAACGGGTCGTCGTCGGCGACGGTTCACCCGAACGGCCAGCTGGGCGGGTCGAAAACTGAGAAGTCCGGGTCTATTCGGGTCGCCACTTTCAACGCTGCCCTGTTCTCAATGGCGCCGGCGATTCTGACGCCGGAGAAAATCGAGCAAGACGAAAATGGCTTCAAGGAACTGAAGGAGTATGCCGAAACATTTGAGGAATTGAAGGAGGATGTCAAAAGAATTCAAGAATCAATAGTAGTGCTTGAATCCACTGAGAAAGATGAAGAAGTACAAGAAACATCATCCAAAGATGTTCCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

145

Amino Acids

16.41

Weight (kDa)

6.77

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 5 cut(s) 16, 19, 49, 52, 177
AcoI YGGCCR 2 cut(s) 41, 166
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 2 cut(s) 245, 260
AfaI GTAC 1 cut(s) 402
AgsI TTSAA 5 cut(s) 223, 295, 334, 356, 377
AjnI CCWGG 1 cut(s) 59
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 38
AoxI GGCC 2 cut(s) 41, 166
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 351
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspLEI GCGC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 149
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 214
BceAI ACGGC 2 cut(s) 28, 181
BciT130I CCWGG 1 cut(s) 61
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 19, 52, 228
BlsI GCNGC 3 cut(s) 20, 53, 229
Bme1390I CCNGG 2 cut(s) 61, 199
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 2 cut(s) 61, 199
BpuMI CCSGG 1 cut(s) 199
BsaHI GRCGYC 2 cut(s) 245, 260
Bse118I RCCGGY 1 cut(s) 247
BseBI CCWGG 1 cut(s) 61
BseGI GGATG 2 cut(s) 346, 413
BseMII CTCAG 3 cut(s) 19, 180, 375
BseXI GCAGC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 43, 168
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 3 cut(s) 198, 248, 263
BslFI GGGAC 2 cut(s) 31, 91
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 31, 91
BsnI GGCC 2 cut(s) 43, 168
Bsp1286I GDGCHC 1 cut(s) 120
BspACI CCGC 5 cut(s) 16, 19, 49, 52, 177
BspANI GGCC 2 cut(s) 43, 168
BspCNI CTCAG 3 cut(s) 18, 181, 376
BspLI GGNNCC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssNI GRCGYC 2 cut(s) 245, 260
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 84, 154
BstACI GRCGYC 2 cut(s) 245, 260
BstC8I GCNNGC 2 cut(s) 170, 249
BstDEI CTNAG 3 cut(s) 5, 189, 384
BstF5I GGATG 2 cut(s) 346, 413
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 24, 174
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 59, 197
BstV1I GCAGC 1 cut(s) 214
BsuRI GGCC 2 cut(s) 43, 168
BtsCI GGATG 2 cut(s) 346, 413
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 170, 249
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 247
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 401
CviJI RGCY 4 cut(s) 43, 168, 172, 291
CviKI_1 RGCY 4 cut(s) 43, 168, 172, 291
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 3 cut(s) 5, 189, 384
DinI GGCGCC 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 41, 166
EciI GGCGGA 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 38
FaiI YATR 1 cut(s) 312
FaqI GGGAC 2 cut(s) 31, 91
FauI CCCGC 2 cut(s) 56, 170
Fnu4HI GCNGC 3 cut(s) 19, 52, 228
FokI GGATG 2 cut(s) 353, 400
Fsp4HI GCNGC 3 cut(s) 19, 52, 228
GlaI GCGC 1 cut(s) 246
GluI GCNGC 3 cut(s) 19, 52, 228
GsaI CCCAGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 2 cut(s) 43, 168
HapII CCGG 3 cut(s) 198, 248, 263
HgaI GACGC 1 cut(s) 268
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 2 cut(s) 245, 260
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 3 cut(s) 253, 359, 377
HpaII CCGG 3 cut(s) 198, 248, 263
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 8, 258
Hpy188III TCNNGA 3 cut(s) 88, 356, 428
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 3 cut(s) 145, 148, 154
HpyAV CCTTC 2 cut(s) 298, 328
HpyCH4III ACNGT 2 cut(s) 84, 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 174
HpyF3I CTNAG 3 cut(s) 5, 189, 384
Hsp92I GRCGYC 2 cut(s) 245, 260
HspAI GCGC 1 cut(s) 245
KasI GGCGCC 1 cut(s) 244
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 214
MboII GAAGA 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 3 cut(s) 110, 329, 351
Mly113I GGCGCC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 23, 32, 319, 331
MreI CGCCGGCG 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 3 cut(s) 198, 248, 263
MspR9I CCNGG 2 cut(s) 61, 199
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 24, 174
NaeI GCCGGC 1 cut(s) 249
NarI GGCGCC 1 cut(s) 245
NciI CCSGG 1 cut(s) 199
NgoMIV GCCGGC 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 3 cut(s) 146, 158, 279
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 3 cut(s) 253, 359, 377
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 3 cut(s) 20, 53, 229
PluTI GGCGCC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SatI GCNGC 3 cut(s) 19, 52, 228
ScrFI CCNGG 2 cut(s) 61, 199
SduI GDGCHC 1 cut(s) 120
SetI ASST 2 cut(s) 15, 174
SfoI GGCGCC 1 cut(s) 246
SgrAI CRCCGGYG 1 cut(s) 247
Sse9I AATT 3 cut(s) 110, 329, 351
SsiI CCGC 5 cut(s) 16, 19, 49, 52, 177
SspDI GGCGCC 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 59, 197
TaaI ACNGT 2 cut(s) 84, 154
TaqI TCGA 4 cut(s) 101, 114, 182, 273
TasI AATT 3 cut(s) 110, 329, 351
TatI WGTACW 1 cut(s) 400
TauI GCSGC 2 cut(s) 21, 54
TfiI GAWTC 3 cut(s) 253, 359, 377
TscAI CASTG 1 cut(s) 388
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 1 cut(s) 388
XapI RAATTY 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.