RLG00000019600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018558
Physical Location & Seq
Forward (+)
54103536 .. 54104705
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019600

Sequence Viewer

Length: 321 bp
ATGTTAACATCCAAGGAGCTCTTAACGGGTGTGGCTTGGAGTTGTTGCAGGCTGTTTAGGCTTCATTCCCGGTATGAAATCTCTAGGCTGTTGATGGCCATGTGTTGCAGGATTGGAGGGCCTCGTCTTATTTCCTGGGTTGGCGACAATGCGGGTCTGGTGGTGGAATCTGCGGCGGCAAGGATTGAAAGGAAGTGGGATCAGGGTGGTGGGCATATTGTGACAACAATAGATTGCTATAGGAAGGCTCAATATTTATTGCGACCATCCTTCCCAAAATGGGGATCAAGGTATGGTTTACTGCTGTTACTTTTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.04

Weight (kDa)

9.54

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 152, 173, 176
AclWI GGATC 2 cut(s) 207, 292
AcoI YGGCCR 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 280, 281
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 2 cut(s) 207, 292
AoxI GGCC 2 cut(s) 96, 119
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 70
BalI TGGCCA 1 cut(s) 98
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 2 cut(s) 88, 274
BciT130I CCWGG 1 cut(s) 136
BcnI CCSGG 1 cut(s) 70
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 2 cut(s) 174, 177
BlsI GCNGC 2 cut(s) 175, 178
Bme1390I CCNGG 2 cut(s) 70, 136
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 2 cut(s) 70, 136
BpuMI CCSGG 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 12, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 281
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 12, 135
BseGI GGATG 2 cut(s) 8, 266
BseLI CCNNNNNNNGG 2 cut(s) 280, 281
BshFI GGCC 2 cut(s) 98, 121
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 280, 281
BsnI GGCC 2 cut(s) 98, 121
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 199, 284
BspACI CCGC 3 cut(s) 152, 173, 176
BspANI GGCC 2 cut(s) 98, 121
BspPI GGATC 2 cut(s) 207, 292
BssECI CCNNGG 2 cut(s) 12, 135
BssMI GATC 2 cut(s) 199, 284
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 8, 266
BstKTI GATC 2 cut(s) 202, 287
BstMBI GATC 2 cut(s) 199, 284
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 68, 134
BstSFI CTRYAG 1 cut(s) 238
BsuRI GGCC 2 cut(s) 98, 121
BtsCI GGATG 2 cut(s) 8, 266
Cac8I GCNNGC 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 119
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 19, 35, 52, 61, 88, 98, 121, 248
CviKI_1 RGCY 8 cut(s) 19, 35, 52, 61, 88, 98, 121, 248
DpnI GATC 2 cut(s) 201, 286
DpnII GATC 2 cut(s) 199, 284
EaeI YGGCCR 1 cut(s) 96
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 75, 101, 216, 240, 294
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 174, 177
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 174, 177
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 174, 177
HaeIII GGCC 2 cut(s) 98, 121
HapII CCGG 1 cut(s) 70
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 167
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 6, 299
Hpy8I GTNNAC 2 cut(s) 6, 299
HpyAV CCTTC 2 cut(s) 238, 280
HpyCH4V TGCA 2 cut(s) 48, 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 103
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 199, 284
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 34, 83, 94, 121, 143, 148, 188
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 220, 306
MalI GATC 2 cut(s) 201, 286
MboI GATC 2 cut(s) 199, 284
MhlI GDGCHC 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 98
MnlI CCTC 2 cut(s) 110, 132
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
MseI TTAA 2 cut(s) 5, 23
Msp20I TGGCCA 1 cut(s) 98
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 2 cut(s) 70, 136
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 70
NdeII GATC 2 cut(s) 199, 284
NlaIII CATG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 175, 178
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspPI GGNCC 1 cut(s) 119
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 5, 23
SatI GCNGC 2 cut(s) 174, 177
Sau3AI GATC 2 cut(s) 199, 284
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 70, 136
SduI GDGCHC 1 cut(s) 21
SetI ASST 2 cut(s) 21, 293
SfcI CTRYAG 1 cut(s) 238
SsiI CCGC 3 cut(s) 152, 173, 176
SspI AATATT 1 cut(s) 254
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 68, 134
StyI CCWWGG 1 cut(s) 12
TauI GCSGC 2 cut(s) 176, 179
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 5, 23
Tru9I TTAA 2 cut(s) 5, 23
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 53, 90
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.