Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000376.1

Orthogroup ID

OG0018558

Physical Location & Seq

Genomic Coordinates Forward (+)

118946 .. 120074

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000376.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ctggctcagtggccgtcgtgtcgacctcaaggatccttcggtcgagaagctgcacgcgccgtcgaaataagcagtgaagctccggtcgagttcttaggcggtaaggctcttggacgacttcgcaggccgaccgggaatcatcatcgccggtggctttgcgctagattctccaactccggcgccaacatcctcgagtttcgtattcaaattctcctagccctccaccacctcaaccagaaactgtttgataaaattcctgagagaaaacttgccacttggaatgccttcatgttgaatgcagtgcgggaggggaagccgaattcgattaccttctgtgcatttctcaatgcttgttcggatacgtcggctttggaacttgggagacagttgcatggaatccggttaatcgccggattcaggtcaccggtcgccggagcccggggccggcagctggtcaccggagcacagcaaggtggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

11.2

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381151
rosa_laevigata	RLG00000019600
rosa_multiflora	Rmu_co8089480.1_g000001 Rmu_co8089482.1_g000001 Rmu_sc0000376.1_g000028 Rmu_sc0003850.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278760 Rroxscaffold_6G00417530
rosa_samantha	Rh2AG341000 Rh2DG367800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	22
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	99, 304
AclWI	GGATC	2 cut(s)	27, 40
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	3 cut(s)	207, 252, 319
AcyI	GRCGYC	1 cut(s)	180
AfiI	CCNNNNNNNGG	5 cut(s)	417, 431, 438, 444, 451
AgeI	ACCGGT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	206, 295
AluBI	AGCT	3 cut(s)	50, 80, 451
AluI	AGCT	3 cut(s)	50, 80, 451
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	27, 40
AlwNI	CAGNNNCTG	1 cut(s)	241
Ama87I	CYCGRG	2 cut(s)	191, 438
AoxI	GGCC	3 cut(s)	11, 125, 442
ApeKI	GCWGC	2 cut(s)	50, 448
ApoI	RAATTY	3 cut(s)	207, 252, 319
AsiGI	ACCGGT	1 cut(s)	424
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	3 cut(s)	59, 161, 182
AspS9I	GGNCC	1 cut(s)	442
AsuC2I	CCSGG	3 cut(s)	133, 439, 440
AsuHPI	GGTGA	2 cut(s)	414, 448
AvaI	CYCGRG	2 cut(s)	191, 438
BamHI	GGATCC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	37, 460
BceAI	ACGGC	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	352
BcnI	CCSGG	3 cut(s)	133, 439, 440
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	162, 215
BfoI	RGCGCY	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	2 cut(s)	51, 449
BlsI	GCNGC	2 cut(s)	52, 450
Bme1390I	CCNGG	3 cut(s)	133, 439, 440
BmeT110I	CYCGRG	2 cut(s)	191, 438
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	4 cut(s)	34, 181, 436, 443
BmrFI	CCNGG	3 cut(s)	133, 439, 440
BpuEI	CTTGAG	1 cut(s)	12
BpuMI	CCSGG	3 cut(s)	133, 439, 440
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	438, 439
BsaWI	WCCGGW	4 cut(s)	82, 399, 424, 458
Bsc4I	CCNNNNNNNGG	5 cut(s)	417, 431, 438, 444, 451
Bse118I	RCCGGY	3 cut(s)	147, 424, 444
BseDI	CCNNGG	2 cut(s)	438, 439
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	5 cut(s)	417, 431, 438, 444, 451
BseMII	CTCAG	2 cut(s)	20, 249
BseXI	GCAGC	2 cut(s)	37, 460
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	4 cut(s)	43, 87, 132, 429
BshFI	GGCC	3 cut(s)	13, 127, 444
BshNI	GGYRCC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	424
BsiEI	CGRYCG	4 cut(s)	43, 87, 132, 429
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	2 cut(s)	191, 438
BslI	CCNNNNNNNGG	5 cut(s)	417, 431, 438, 444, 451
BsmAI	GTCTC	1 cut(s)	376
BsmI	GAATGC	2 cut(s)	286, 301
BsnI	GGCC	3 cut(s)	13, 127, 444
BsoBI	CYCGRG	2 cut(s)	191, 438
Bsp1286I	GDGCHC	2 cut(s)	439, 466
Bsp143I	GATC	1 cut(s)	32
BspACI	CCGC	2 cut(s)	99, 304
BspANI	GGCC	3 cut(s)	13, 127, 444
BspCNI	CTCAG	2 cut(s)	19, 250
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	34, 181, 436, 443
BspPI	GGATC	2 cut(s)	27, 40
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	3 cut(s)	147, 424, 444
BssAI	RCCGGY	3 cut(s)	147, 424, 444
BssECI	CCNNGG	2 cut(s)	438, 439
BssMI	GATC	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	243, 387
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	55, 125, 446
BstDEI	CTNAG	3 cut(s)	6, 94, 258
BstEII	GGTNACC	2 cut(s)	420, 454
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	3 cut(s)	59, 161, 182
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	32
BstMCI	CGRYCG	4 cut(s)	43, 87, 132, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstPI	GGTNACC	2 cut(s)	420, 454
BstSCI	CCNGG	3 cut(s)	131, 437, 438
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	37, 460
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	13, 127, 444
BtgZI	GCGATG	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	2 cut(s)	79, 306
BtsIMutI	CAGTG	3 cut(s)	14, 79, 306
Cac8I	GCNNGC	3 cut(s)	55, 125, 446
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	3 cut(s)	59, 161, 182
Cfr10I	RCCGGY	3 cut(s)	147, 424, 444
Cfr13I	GGNCC	1 cut(s)	442
Cfr9I	CCCGGG	1 cut(s)	438
CspAI	ACCGGT	1 cut(s)	424
CviAII	CATG	2 cut(s)	289, 392
DdeI	CTNAG	3 cut(s)	6, 94, 258
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	439
Eco88I	CYCGRG	2 cut(s)	191, 438
Eco91I	GGTNACC	2 cut(s)	420, 454
EcoO65I	GGTNACC	2 cut(s)	420, 454
EcoRI	GAATTC	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	439
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaeI	CATG	2 cut(s)	292, 395
FaiI	YATR	2 cut(s)	290, 393
FatI	CATG	2 cut(s)	288, 391
FauI	CCCGC	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	51, 449
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	2 cut(s)	51, 449
FspBI	CTAG	2 cut(s)	162, 215
GlaI	GCGC	3 cut(s)	58, 160, 181
GluI	GCNGC	2 cut(s)	51, 449
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	13, 127, 444
HhaI	GCGC	3 cut(s)	59, 161, 182
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	292, 395
Hin6I	GCGC	3 cut(s)	57, 159, 180
HinP1I	GCGC	3 cut(s)	57, 159, 180
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HinfI	GANTC	4 cut(s)	136, 165, 396, 414
HphI	GGTGA	2 cut(s)	414, 448
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	2 cut(s)	44, 257
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	3 cut(s)	19, 65, 367
HpyAV	CCTTC	3 cut(s)	46, 295, 340
HpyCH4III	ACNGT	2 cut(s)	243, 387
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	4 cut(s)	53, 299, 338, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	6, 94, 258
HpySE526I	ACGT	1 cut(s)	362
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	292, 395
HspAI	GCGC	3 cut(s)	57, 159, 180
KasI	GGCGCC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	444
KroNI	GCCGGC	1 cut(s)	446
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	3 cut(s)	85, 434, 461
Lsp1109I	GCAGC	2 cut(s)	37, 460
MaeI	CTAG	2 cut(s)	162, 215
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	420, 454
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	439, 466
MluCI	AATT	3 cut(s)	207, 252, 319
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	36, 200, 230, 239, 301, 470
MroNI	GCCGGC	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	451
MspR9I	CCNGG	3 cut(s)	133, 439, 440
Mva1269I	GAATGC	2 cut(s)	286, 301
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	56
NaeI	GCCGGC	1 cut(s)	446
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	3 cut(s)	133, 439, 440
NdeII	GATC	1 cut(s)	32
NgoMIV	GCCGGC	1 cut(s)	444
NlaIII	CATG	2 cut(s)	292, 395
NlaIV	GGNNCC	4 cut(s)	34, 181, 436, 443
NmuCI	GTSAC	2 cut(s)	420, 454
PaeR7I	CTCGAG	1 cut(s)	191
PctI	GAATGC	2 cut(s)	286, 301
PdiI	GCCGGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	136, 165, 396, 414
PinAI	ACCGGT	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	52, 450
PluTI	GGCGCC	1 cut(s)	183
PspEI	GGTNACC	2 cut(s)	420, 454
PspN4I	GGNNCC	4 cut(s)	34, 181, 436, 443
PspPI	GGNCC	1 cut(s)	442
PspXI	VCTCGAGB	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	451
SalI	GTCGAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	2 cut(s)	51, 449
Sau3AI	GATC	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	442
ScrFI	CCNGG	3 cut(s)	133, 439, 440
SduI	GDGCHC	2 cut(s)	439, 466
SetI	ASST	9 cut(s)	28, 52, 82, 231, 332, 365, 422, 453, 475
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	191
SgrAI	CRCCGGYG	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	191
SmaI	CCCGGG	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	27, 191
SmoI	CTYRAG	2 cut(s)	27, 191
Sse9I	AATT	3 cut(s)	207, 252, 319
SsiI	CCGC	2 cut(s)	99, 304
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	162, 215
StyD4I	CCNGG	3 cut(s)	131, 437, 438
TaaI	ACNGT	2 cut(s)	243, 387
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	6 cut(s)	22, 43, 63, 87, 192, 323
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	207, 252, 319
TfiI	GAWTC	4 cut(s)	136, 165, 396, 414
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	3 cut(s)	14, 79, 306
TseFI	GTSAC	2 cut(s)	420, 454
TseI	GCWGC	2 cut(s)	50, 448
Tsp45I	GTSAC	2 cut(s)	420, 454
TspDTI	ATGAA	1 cut(s)	277
TspMI	CCCGGG	1 cut(s)	438
TspRI	CASTG	3 cut(s)	14, 79, 306
XapI	RAATTY	3 cut(s)	207, 252, 319
XhoI	CTCGAG	1 cut(s)	191
XmaI	CCCGGG	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	162, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.