Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003850.1

Orthogroup ID

OG0018558

Physical Location & Seq

Genomic Coordinates Reverse (-)

23108 .. 24637

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003850.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgcccttgtcgtcaaggtcgagcagatatgtgatgtctttgttgggtgcagtgtctttgatatgtactgaaaaactggtccaggagctgtttgataaaattcctgagagaaaacttgccacttggaatgccttcatgttgaatgcagtgcgggaggggaagccgaattcgattaccttctgtgcatttctcaatgcttgttcagatacgtcggctttggaacttgggagacagttgcatggaatccggttaacagtccggtggccggattccggtcaccggtcgccggagctcgcggccggcagctggtcaccggagcacagcaaggcggagggttggcgccggatttttcagatcaagagatcgttctcgtcctgtggcggccgtaacataagcctcgcctacgccacttggtctgctgttagacaggaatatgatgttaacatccagggcttgaggggtgttgcttggagttgtttgagggctgttttggcttcagatttccatgctggttttggtttgaaatctgcggcagtaaagatcagagggaacgacatcggggcaagttcatggcgacgtggttgtggcagcatggttcgtgatgatctaggtcgtggtggttggattcgtggcggcgggatcatggcggaacggtggtggcgacaggggtcggaaggaattgcagcgctggctccgggttgctggagatggaggctgggtctgggccaaggcaagcctaatgagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

249

Amino Acids

27.47

Weight (kDa)

10.04

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381151
rosa_laevigata	RLG00000019600
rosa_multiflora	Rmu_co8089480.1_g000001 Rmu_co8089482.1_g000001 Rmu_sc0000376.1_g000028 Rmu_sc0003850.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278760 Rroxscaffold_6G00417530
rosa_samantha	Rh2AG341000 Rh2DG367800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	339
AccII	CGCG	1 cut(s)	296
AciI	CCGC	8 cut(s)	151, 296, 329, 381, 530, 633, 636, 647
AclWI	GGATC	1 cut(s)	647
AcoI	YGGCCR	3 cut(s)	263, 297, 382
AcsI	RAATTY	2 cut(s)	99, 166
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	340
AfaI	GTAC	1 cut(s)	67
AfeI	AGCGCT	1 cut(s)	687
AfiI	CCNNNNNNNGG	5 cut(s)	265, 272, 279, 286, 306
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	142, 523
AjiI	CACGTC	1 cut(s)	578
AjnI	CCWGG	2 cut(s)	81, 447
AluBI	AGCT	4 cut(s)	88, 292, 306, 745
AluI	AGCT	4 cut(s)	88, 292, 306, 745
Alw21I	GWGCWC	2 cut(s)	294, 321
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	647
AlwNI	CAGNNNCTG	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	687
AoxI	GGCC	4 cut(s)	263, 297, 382, 724
ApeKI	GCWGC	3 cut(s)	303, 588, 683
ApoI	RAATTY	2 cut(s)	99, 166
AsiGI	ACCGGT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	342, 688
AspS9I	GGNCC	2 cut(s)	79, 724
AsuC2I	CCSGG	1 cut(s)	696
AsuHPI	GGTGA	2 cut(s)	269, 303
AvaII	GGWCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	294, 321
BbvI	GCAGC	3 cut(s)	315, 600, 695
BccI	CCATC	1 cut(s)	702
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	83, 449
BcnI	CCSGG	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	608
BfoI	RGCGCY	2 cut(s)	343, 689
BisI	GCNGC	7 cut(s)	297, 304, 382, 531, 589, 634, 684
BlsI	GCNGC	7 cut(s)	298, 305, 383, 532, 590, 635, 685
Bme1390I	CCNGG	3 cut(s)	83, 449, 696
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	79, 724
BmiI	GGNNCC	2 cut(s)	341, 693
BmrFI	CCNGG	3 cut(s)	83, 449, 696
BoxI	GACNNNNGTC	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	724
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	448, 727
BsaWI	WCCGGW	5 cut(s)	246, 258, 272, 279, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bsc4I	CCNNNNNNNGG	5 cut(s)	265, 272, 279, 286, 306
Bse118I	RCCGGY	2 cut(s)	279, 299
Bse1I	ACTGG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	83, 449
BseDI	CCNNGG	2 cut(s)	448, 727
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	5 cut(s)	265, 272, 279, 286, 306
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	81
BseX3I	CGGCCG	2 cut(s)	297, 382
BseXI	GCAGC	3 cut(s)	315, 600, 695
BseYI	CCCAGC	1 cut(s)	715
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	3 cut(s)	284, 300, 385
BshFI	GGCC	4 cut(s)	265, 299, 384, 726
BshNI	GGYRCC	1 cut(s)	339
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	3 cut(s)	284, 300, 385
BsiHKAI	GWGCWC	2 cut(s)	294, 321
BslI	CCNNNNNNNGG	5 cut(s)	265, 272, 279, 286, 306
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	2 cut(s)	133, 148
BsnI	GGCC	4 cut(s)	265, 299, 384, 726
Bsp1286I	GDGCHC	2 cut(s)	294, 321
Bsp143I	GATC	5 cut(s)	354, 362, 540, 604, 639
BspACI	CCGC	8 cut(s)	151, 296, 329, 381, 530, 633, 636, 647
BspANI	GGCC	4 cut(s)	265, 299, 384, 726
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	341, 693
BspPI	GGATC	1 cut(s)	647
BspT107I	GGYRCC	1 cut(s)	339
BsrFI	RCCGGY	2 cut(s)	279, 299
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	2 cut(s)	279, 299
BssECI	CCNNGG	2 cut(s)	448, 727
BssMI	GATC	5 cut(s)	354, 362, 540, 604, 639
BssNI	GRCGYC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	727
Bst2UI	CCWGG	2 cut(s)	83, 449
Bst4CI	ACNGT	3 cut(s)	234, 256, 654
BstACI	GRCGYC	1 cut(s)	340
BstC8I	GCNNGC	4 cut(s)	294, 301, 690, 734
BstDEI	CTNAG	1 cut(s)	105
BstEII	GGTNACC	2 cut(s)	275, 309
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	296
BstH2I	RGCGCY	2 cut(s)	343, 689
BstHHI	GCGC	2 cut(s)	342, 688
BstKTI	GATC	5 cut(s)	357, 365, 543, 607, 642
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	5 cut(s)	354, 362, 540, 604, 639
BstMCI	CGRYCG	3 cut(s)	284, 300, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 689, 742
BstNI	CCWGG	2 cut(s)	83, 449
BstPAI	GACNNNNGTC	1 cut(s)	667
BstPI	GGTNACC	2 cut(s)	275, 309
BstSCI	CCNGG	3 cut(s)	81, 447, 694
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	315, 600, 695
BstZI	CGGCCG	2 cut(s)	297, 382
BsuRI	GGCC	4 cut(s)	265, 299, 384, 726
BtrI	CACGTC	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	444
BtsI	GCAGTG	2 cut(s)	57, 153
BtsIMutI	CAGTG	2 cut(s)	57, 153
Cac8I	GCNNGC	4 cut(s)	294, 301, 690, 734
CaiI	CAGNNNCTG	1 cut(s)	88
CfoI	GCGC	2 cut(s)	342, 688
Cfr10I	RCCGGY	2 cut(s)	279, 299
Cfr13I	GGNCC	2 cut(s)	79, 724
Csp6I	GTAC	1 cut(s)	66
CspAI	ACCGGT	1 cut(s)	279
CviAII	CATG	6 cut(s)	136, 239, 506, 570, 592, 643
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	105
DinI	GGCGCC	1 cut(s)	341
DpnI	GATC	5 cut(s)	356, 364, 542, 606, 641
DpnII	GATC	5 cut(s)	354, 362, 540, 604, 639
EaeI	YGGCCR	3 cut(s)	263, 297, 382
EagI	CGGCCG	2 cut(s)	297, 382
EciI	GGCGGA	2 cut(s)	344, 662
Ecl136II	GAGCTC	1 cut(s)	292
EclXI	CGGCCG	2 cut(s)	297, 382
Eco130I	CCWWGG	1 cut(s)	727
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	79
Eco47III	AGCGCT	1 cut(s)	687
Eco52I	CGGCCG	2 cut(s)	297, 382
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	480
Eco91I	GGTNACC	2 cut(s)	275, 309
EcoICRI	GAGCTC	1 cut(s)	292
EcoO65I	GGTNACC	2 cut(s)	275, 309
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	81, 447
EcoT14I	CCWWGG	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	341
EheI	GGCGCC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	727
FaeI	CATG	6 cut(s)	139, 242, 509, 573, 595, 646
FatI	CATG	6 cut(s)	135, 238, 505, 569, 591, 642
FauI	CCCGC	2 cut(s)	144, 629
Fnu4HI	GCNGC	7 cut(s)	297, 304, 382, 531, 589, 634, 684
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	7 cut(s)	297, 304, 382, 531, 589, 634, 684
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	2 cut(s)	341, 687
GluI	GCNGC	7 cut(s)	297, 304, 382, 531, 589, 634, 684
GsaI	CCCAGC	1 cut(s)	719
GsuI	CTGGAG	1 cut(s)	724
HaeII	RGCGCY	2 cut(s)	343, 689
HaeIII	GGCC	4 cut(s)	265, 299, 384, 726
HhaI	GCGC	2 cut(s)	342, 688
Hin1I	GRCGYC	1 cut(s)	340
Hin1II	CATG	6 cut(s)	139, 242, 509, 573, 595, 646
Hin6I	GCGC	2 cut(s)	340, 686
HinP1I	GCGC	2 cut(s)	340, 686
HincII	GTYRAC	2 cut(s)	252, 442
HindII	GTYRAC	2 cut(s)	252, 442
HinfI	GANTC	3 cut(s)	243, 269, 625
HpaI	GTTAAC	2 cut(s)	252, 442
HphI	GGTGA	2 cut(s)	269, 303
Hpy166II	GTNNAC	2 cut(s)	252, 442
Hpy188I	TCNGA	5 cut(s)	205, 354, 499, 545, 673
Hpy188III	TCNNGA	3 cut(s)	104, 358, 599
Hpy8I	GTNNAC	2 cut(s)	252, 442
Hpy99I	CGWCG	2 cut(s)	214, 579
HpyAV	CCTTC	3 cut(s)	142, 187, 668
HpyCH4III	ACNGT	3 cut(s)	234, 256, 654
HpyCH4IV	ACGT	2 cut(s)	209, 577
HpyCH4V	TGCA	5 cut(s)	50, 146, 185, 238, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 689, 742
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	2 cut(s)	209, 577
Hsp92I	GRCGYC	1 cut(s)	340
Hsp92II	CATG	6 cut(s)	139, 242, 509, 573, 595, 646
HspAI	GCGC	2 cut(s)	340, 686
KasI	GGCGCC	1 cut(s)	339
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
KspAI	GTTAAC	2 cut(s)	252, 442
Kzo9I	GATC	5 cut(s)	354, 362, 540, 604, 639
LmnI	GCTCC	4 cut(s)	85, 289, 316, 697
Lsp1109I	GCAGC	3 cut(s)	315, 600, 695
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	2 cut(s)	209, 577
MaeIII	GTNAC	3 cut(s)	275, 309, 386
MalI	GATC	5 cut(s)	356, 364, 542, 606, 641
MboI	GATC	5 cut(s)	354, 362, 540, 604, 639
MhlI	GDGCHC	2 cut(s)	294, 321
MluCI	AATT	3 cut(s)	99, 166, 678
Mly113I	GGCGCC	1 cut(s)	340
MmeI	TCCRAC	2 cut(s)	602, 651
MnlI	CCTC	7 cut(s)	148, 325, 407, 450, 474, 539, 705
MroNI	GCCGGC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	2 cut(s)	251, 441
MspA1I	CMGCKG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	83, 449, 696
Mva1269I	GAATGC	2 cut(s)	133, 148
MvaI	CCWGG	2 cut(s)	83, 449
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	491, 689, 742
NaeI	GCCGGC	1 cut(s)	301
NarI	GGCGCC	1 cut(s)	340
NciI	CCSGG	1 cut(s)	696
NdeII	GATC	5 cut(s)	354, 362, 540, 604, 639
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	6 cut(s)	139, 242, 509, 573, 595, 646
NlaIV	GGNNCC	2 cut(s)	341, 693
NmuCI	GTSAC	2 cut(s)	275, 309
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 658
PctI	GAATGC	2 cut(s)	133, 148
PdiI	GCCGGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	243, 269, 625
PfoI	TCCNGGA	1 cut(s)	81
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	7 cut(s)	298, 305, 383, 532, 590, 635, 685
PluTI	GGCGCC	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	81, 447
PspEI	GGTNACC	2 cut(s)	275, 309
PspFI	CCCAGC	1 cut(s)	715
PspGI	CCWGG	2 cut(s)	81, 447
PspN4I	GGNNCC	2 cut(s)	341, 693
PspPI	GGNCC	2 cut(s)	79, 724
PstNI	CAGNNNCTG	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	251, 441
SatI	GCNGC	7 cut(s)	297, 304, 382, 531, 589, 634, 684
Sau3AI	GATC	5 cut(s)	354, 362, 540, 604, 639
Sau96I	GGNCC	2 cut(s)	79, 724
ScrFI	CCNGG	3 cut(s)	83, 449, 696
SduI	GDGCHC	2 cut(s)	294, 321
SetI	ASST	9 cut(s)	20, 90, 179, 212, 294, 308, 580, 613, 747
SfoI	GGCGCC	1 cut(s)	341
SinI	GGWCC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	3 cut(s)	99, 166, 678
SsiI	CCGC	8 cut(s)	151, 296, 329, 381, 530, 633, 636, 647
SspDI	GGCGCC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	81, 447, 694
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	3 cut(s)	234, 256, 654
TaiI	ACGT	2 cut(s)	212, 580
TaqI	TCGA	2 cut(s)	20, 170
TasI	AATT	3 cut(s)	99, 166, 678
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	4 cut(s)	299, 384, 533, 636
TfiI	GAWTC	3 cut(s)	243, 269, 625
Tru1I	TTAA	2 cut(s)	251, 441
Tru9I	TTAA	2 cut(s)	251, 441
TscAI	CASTG	2 cut(s)	57, 153
TseFI	GTSAC	2 cut(s)	275, 309
TseI	GCWGC	3 cut(s)	303, 588, 683
Tsp45I	GTSAC	2 cut(s)	275, 309
TspDTI	ATGAA	2 cut(s)	124, 558
TspRI	CASTG	2 cut(s)	57, 153
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	2 cut(s)	99, 166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.