Rroxscaffold_6G00417530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018558
Physical Location & Seq
Forward (+)
39217320 .. 39232296
14977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417530.1

Sequence Viewer

Length: 483 bp
ATGATACTAACTTCCAAGGAGCTCGAGGGGTGTTGTTTGAGGGCTGTTTTGGCTTCAGATTTCCGGTATGAAATCTCTGGGATGTTGATGGCCATGTGGTGCAGGATTGGAGGGCCTTGTCTCTCTTCCTGGATCAACGACGGTGCTGGTTTTGGTTTGAAATCTGCGGCGGCAAAGATCGGAGGGAGCGCGATCGGGGCAGGTTCATGGCGACGTGGTTGTGGCGGCATTGTTTGTGATGATCTAGGTCGTGGCGGTTGGATTCGTGGCGACGGGATCATGGCGGAACGTATGACTAGTAGATGGTTCCAGAAAAATCATGTTTGGAACAGGATTTTCTTGTCTGGTCTTTCTAATGGTTTGAATCCATTAGCTTTCTTTGTTTTTACTACAACAACAAGTATTTTATGCACCAATACCGGAAGAAATAGTGACATGTCTATTTTGGACGGCAGCGCAGTGTATCCATTATCCACATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.21

Weight (kDa)

8.79

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
AccII CGCG 1 cut(s) 191
AciI CCGC 5 cut(s) 167, 170, 225, 255, 284
AclWI GGATC 2 cut(s) 140, 284
AcoI YGGCCR 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 39
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 2 cut(s) 160, 364
AhlI ACTAGT 1 cut(s) 296
AjiI CACGTC 1 cut(s) 215
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 2 cut(s) 22, 374
AluI AGCT 2 cut(s) 22, 374
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 140, 284
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 2 cut(s) 90, 113
ApeKI GCWGC 1 cut(s) 453
AspLEI GCGC 2 cut(s) 191, 458
AspS9I GGNCC 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 23
BalI TGGCCA 1 cut(s) 92
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 465
BccI CCATC 2 cut(s) 82, 297
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 130
BciVI GTATCC 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 2 cut(s) 245, 297
BfuAI ACCTGC 1 cut(s) 191
BfuI GTATCC 1 cut(s) 474
BisI GCNGC 4 cut(s) 168, 171, 226, 454
BlsI GCNGC 4 cut(s) 169, 172, 227, 455
Bme1390I CCNGG 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 2 cut(s) 63, 419
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 465
BsgI GTGCAG 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 2 cut(s) 92, 115
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 64, 420
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 2 cut(s) 92, 115
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 5 cut(s) 132, 177, 192, 241, 276
BspACI CCGC 5 cut(s) 167, 170, 225, 255, 284
BspANI GGCC 2 cut(s) 92, 115
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 308
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 2 cut(s) 140, 284
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 5 cut(s) 132, 177, 192, 241, 276
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 191, 458
BstKTI GATC 5 cut(s) 135, 180, 195, 244, 279
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 5 cut(s) 132, 177, 192, 241, 276
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 2 cut(s) 50, 197
BstNI CCWGG 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 465
BsuI GTATCC 1 cut(s) 474
BsuRI GGCC 2 cut(s) 92, 115
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 191
CfoI GCGC 2 cut(s) 191, 458
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 5 cut(s) 94, 207, 280, 320, 436
CviJI RGCY 6 cut(s) 22, 44, 53, 92, 115, 374
CviKI_1 RGCY 6 cut(s) 22, 44, 53, 92, 115, 374
DpnI GATC 5 cut(s) 134, 179, 194, 243, 278
DpnII GATC 5 cut(s) 132, 177, 192, 241, 276
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 299
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 5 cut(s) 97, 210, 283, 323, 439
FaiI YATR 8 cut(s) 69, 95, 208, 281, 293, 321, 409, 437
FatI CATG 5 cut(s) 93, 206, 279, 319, 435
Fnu4HI GCNGC 4 cut(s) 168, 171, 226, 454
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 4 cut(s) 168, 171, 226, 454
FspBI CTAG 2 cut(s) 245, 297
GlaI GCGC 2 cut(s) 190, 457
GluI GCNGC 4 cut(s) 168, 171, 226, 454
HaeIII GGCC 2 cut(s) 92, 115
HapII CCGG 2 cut(s) 64, 420
HhaI GCGC 2 cut(s) 191, 458
Hin1II CATG 5 cut(s) 97, 210, 283, 323, 439
Hin6I GCGC 2 cut(s) 189, 456
HinP1I GCGC 2 cut(s) 189, 456
HinfI GANTC 2 cut(s) 262, 364
HpaII CCGG 2 cut(s) 64, 420
Hpy188I TCNGA 2 cut(s) 58, 182
Hpy188III TCNNGA 1 cut(s) 310
Hpy99I CGWCG 3 cut(s) 143, 216, 275
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 214, 289
HpyCH4V TGCA 2 cut(s) 102, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 197
HpySE526I ACGT 2 cut(s) 214, 289
Hsp92II CATG 5 cut(s) 97, 210, 283, 323, 439
HspAI GCGC 2 cut(s) 189, 456
Kzo9I GATC 5 cut(s) 132, 177, 192, 241, 276
LmnI GCTCC 2 cut(s) 19, 186
Lsp1109I GCAGC 1 cut(s) 465
MaeI CTAG 2 cut(s) 245, 297
MaeII ACGT 2 cut(s) 214, 289
MaeIII GTNAC 1 cut(s) 431
MalI GATC 5 cut(s) 134, 179, 194, 243, 278
MboI GATC 5 cut(s) 132, 177, 192, 241, 276
MboII GAAGA 2 cut(s) 117, 435
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 4 cut(s) 19, 33, 104, 176
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 92
MspI CCGG 2 cut(s) 64, 420
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 50, 197
NdeII GATC 5 cut(s) 132, 177, 192, 241, 276
NlaIII CATG 5 cut(s) 97, 210, 283, 323, 439
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 439
PaeR7I CTCGAG 1 cut(s) 23
PciI ACATGT 1 cut(s) 435
PfeI GAWTC 2 cut(s) 262, 364
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 4 cut(s) 169, 172, 227, 455
Ple19I CGATCG 1 cut(s) 195
PscI ACATGT 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 113
PspXI VCTCGAGB 1 cut(s) 23
PvuI CGATCG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 24
SatI GCNGC 4 cut(s) 168, 171, 226, 454
Sau3AI GATC 5 cut(s) 132, 177, 192, 241, 276
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 24
SetI ASST 6 cut(s) 24, 205, 217, 250, 292, 376
Sfr274I CTCGAG 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 296
SsiI CCGC 5 cut(s) 167, 170, 225, 255, 284
SspMI CTAG 2 cut(s) 245, 297
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 2 cut(s) 217, 292
TaqI TCGA 1 cut(s) 24
TauI GCSGC 3 cut(s) 170, 173, 228
TfiI GAWTC 2 cut(s) 262, 364
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 84, 195
TspRI CASTG 1 cut(s) 465
XceI RCATGY 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 2 cut(s) 245, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.