Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8089480.1

Orthogroup ID

OG0018558

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 592

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8089480.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

taacatgcgccgcgactccgtccgccccaacgacttcacattcccctgcgccttcaaggcctccggcttgcttcgtctccctgtggtcggaaaacaggtgcatgccctcgccgttaaggcggggcagatatgtgatgtgttcgttgggtgcagtgcttttgacatgtactgcaaaactggtctgagagacgatgcagggaaggtgtttgatgaaatgcctgagagaaaccttgctacttggaatgcctacatttcaaatgcggtgcttgacggccgaccggtgagtgctgtaaacaagtttattgagtttgtgagggcgggtggggagccgaattcgattaccttctgtgcatttctcaatgcctgttcggatacgtcagctttggaacttgggaggcagttacatgggtttgtggtgcgatgtgggtatgggaaagatgtgtcagtgctcaatgggcttgtggatttttatggcaagtgtcgggatgttgggtcgtctaagatggttttcgatagaattggtgaggctaatcatgtctcttggtgctccatggtggctgcttatgtgcaaaactatgaggaggagaaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

197

Amino Acids

21.62

Weight (kDa)

6.97

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381151
rosa_laevigata	RLG00000019600
rosa_multiflora	Rmu_co8089480.1_g000001 Rmu_co8089482.1_g000001 Rmu_sc0000376.1_g000028 Rmu_sc0003850.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278760 Rroxscaffold_6G00417530
rosa_samantha	Rh2AG341000 Rh2DG367800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	5 cut(s)	11, 23, 120, 261, 318
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	163
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	56, 256
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw21I	GWGCWC	2 cut(s)	451, 549
Alw26I	GTCTC	3 cut(s)	81, 181, 542
AoxI	GGCC	2 cut(s)	58, 272
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	1 cut(s)	332
AsiGI	ACCGGT	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	10, 51
AsuHPI	GGTGA	2 cut(s)	293, 534
Bbv12I	GWGCWC	2 cut(s)	451, 549
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	2 cut(s)	96, 287
BciVI	GTATCC	1 cut(s)	365
BcoDI	GTCTC	3 cut(s)	81, 181, 542
BfuI	GTATCC	1 cut(s)	365
BglI	GCCNNNNNGGC	2 cut(s)	57, 117
BisI	GCNGC	2 cut(s)	11, 559
BlsI	GCNGC	2 cut(s)	12, 560
BmiI	GGNNCC	1 cut(s)	328
BmsI	GCATC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	550
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	174, 211
BseNI	ACTGG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	2 cut(s)	275, 279
BshFI	GGCC	2 cut(s)	60, 274
BshTI	ACCGGT	1 cut(s)	278
BsiEI	CGRYCG	2 cut(s)	275, 279
BsiHKAI	GWGCWC	2 cut(s)	451, 549
BsiSI	CCGG	2 cut(s)	64, 279
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	3 cut(s)	81, 181, 542
BsmBI	CGTCTC	2 cut(s)	81, 181
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	60, 274
Bsp1286I	GDGCHC	2 cut(s)	451, 549
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	5 cut(s)	11, 23, 120, 261, 318
BspANI	GGCC	2 cut(s)	60, 274
BspCNI	CTCAG	2 cut(s)	175, 212
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	69, 103
BstDEI	CTNAG	3 cut(s)	183, 220, 499
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	1 cut(s)	491
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	10, 51
BstMAI	GTCTC	3 cut(s)	81, 181, 542
BstMCI	CGRYCG	2 cut(s)	275, 279
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 117, 455
BstNSI	RCATGY	3 cut(s)	8, 105, 167
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	545
BstZI	CGGCCG	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	60, 274
BtgI	CCRYGG	1 cut(s)	550
BtgZI	GCGATG	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	491
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 451
Cac8I	GCNNGC	2 cut(s)	69, 103
CfoI	GCGC	2 cut(s)	10, 51
Cfr10I	RCCGGY	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	167
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	6 cut(s)	5, 102, 164, 405, 534, 551
CviJI	RGCY	8 cut(s)	60, 67, 274, 329, 381, 458, 528, 558
CviKI_1	RGCY	8 cut(s)	60, 67, 274, 329, 381, 458, 528, 558
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	3 cut(s)	183, 220, 499
EaeI	YGGCCR	1 cut(s)	272
EagI	CGGCCG	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	550
Eco147I	AGGCCT	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
Esp3I	CGTCTC	2 cut(s)	81, 181
FaeI	CATG	6 cut(s)	8, 105, 167, 408, 537, 554
FatI	CATG	6 cut(s)	4, 101, 163, 404, 533, 550
FauI	CCCGC	2 cut(s)	113, 311
Fnu4HI	GCNGC	2 cut(s)	11, 559
FokI	GGATG	1 cut(s)	498
Fsp4HI	GCNGC	2 cut(s)	11, 559
GlaI	GCGC	2 cut(s)	9, 50
GluI	GCNGC	2 cut(s)	11, 559
HaeIII	GGCC	2 cut(s)	60, 274
HapII	CCGG	2 cut(s)	64, 279
HhaI	GCGC	2 cut(s)	10, 51
Hin1II	CATG	6 cut(s)	8, 105, 167, 408, 537, 554
Hin6I	GCGC	2 cut(s)	8, 49
HinP1I	GCGC	2 cut(s)	8, 49
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	2 cut(s)	64, 279
HphI	GGTGA	2 cut(s)	293, 534
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	90, 184, 371
Hpy188III	TCNNGA	1 cut(s)	483
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	4 cut(s)	62, 194, 353, 581
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	6 cut(s)	101, 151, 172, 195, 351, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 117, 455
HpyF3I	CTNAG	3 cut(s)	183, 220, 499
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	6 cut(s)	8, 105, 167, 408, 537, 554
HspAI	GCGC	2 cut(s)	8, 49
LmnI	GCTCC	2 cut(s)	326, 552
LpnPI	CCDG	9 cut(s)	59, 77, 81, 94, 163, 181, 232, 292, 377
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	1 cut(s)	182
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	451, 549
MluCI	AATT	2 cut(s)	332, 517
MlyI	GAGTC	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	7 cut(s)	71, 117, 307, 388, 518, 572, 575
MseI	TTAA	1 cut(s)	115
MspI	CCGG	2 cut(s)	64, 279
Mva1269I	GAATGC	1 cut(s)	248
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	3 cut(s)	57, 117, 455
NcoI	CCATGG	1 cut(s)	550
NlaIII	CATG	6 cut(s)	8, 105, 167, 408, 537, 554
NlaIV	GGNNCC	1 cut(s)	328
NspI	RCATGY	3 cut(s)	8, 105, 167
PaeI	GCATGC	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	60
PciI	ACATGT	1 cut(s)	163
PctI	GAATGC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	12, 560
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
PscI	ACATGT	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	115
SatI	GCNGC	2 cut(s)	11, 559
SchI	GAGTC	1 cut(s)	9
SduI	GDGCHC	2 cut(s)	451, 549
SetI	ASST	6 cut(s)	100, 205, 232, 345, 378, 383
SfaNI	GCATC	1 cut(s)	182
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	2 cut(s)	332, 517
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	5 cut(s)	11, 23, 120, 261, 318
StuI	AGGCCT	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	550
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	336, 511
TasI	AATT	2 cut(s)	332, 517
TatI	WGTACW	1 cut(s)	166
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	115
Tru9I	TTAA	1 cut(s)	115
TscAI	CASTG	2 cut(s)	158, 451
TseI	GCWGC	1 cut(s)	558
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	2 cut(s)	158, 451
Tth111I	GACNNNGTC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	3 cut(s)	8, 105, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.