Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0381151 |
| rosa_laevigata | RLG00000019600 |
| rosa_multiflora | Rmu_co8089480.1_g000001 Rmu_co8089482.1_g000001 Rmu_sc0000376.1_g000028 Rmu_sc0003850.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00278760 Rroxscaffold_6G00417530 |
| rosa_samantha | Rh2AG341000 Rh2DG367800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 179 |
| AciI | CCGC | 1 cut(s) | 106 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 289 |
| AgsI | TTSAA | 3 cut(s) | 150, 188, 211 |
| AluBI | AGCT | 2 cut(s) | 205, 259 |
| AluI | AGCT | 2 cut(s) | 205, 259 |
| Alw21I | GWGCWC | 1 cut(s) | 47 |
| Alw26I | GTCTC | 1 cut(s) | 40 |
| ApeKI | GCWGC | 2 cut(s) | 56, 259 |
| AseI | ATTAAT | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| Bbv12I | GWGCWC | 1 cut(s) | 47 |
| BbvI | GCAGC | 2 cut(s) | 43, 246 |
| BccI | CCATC | 1 cut(s) | 323 |
| BcoDI | GTCTC | 1 cut(s) | 40 |
| BfaI | CTAG | 1 cut(s) | 111 |
| BisI | GCNGC | 2 cut(s) | 57, 260 |
| BlsI | GCNGC | 2 cut(s) | 58, 261 |
| BsaBI | GATNNNNATC | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 1 cut(s) | 48 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 289 |
| Bse8I | GATNNNNATC | 1 cut(s) | 198 |
| BseDI | CCNNGG | 1 cut(s) | 48 |
| BseGI | GGATG | 2 cut(s) | 199, 315 |
| BseJI | GATNNNNATC | 1 cut(s) | 198 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BseRI | GAGGAG | 2 cut(s) | 92, 95 |
| BseXI | GCAGC | 2 cut(s) | 43, 246 |
| Bsh1236I | CGCG | 1 cut(s) | 179 |
| BsiHKAI | GWGCWC | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BsmAI | GTCTC | 1 cut(s) | 40 |
| BsmI | GAATGC | 1 cut(s) | 217 |
| Bsp1286I | GDGCHC | 1 cut(s) | 47 |
| Bsp143I | GATC | 1 cut(s) | 287 |
| Bsp19I | CCATGG | 1 cut(s) | 48 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspFNI | CGCG | 1 cut(s) | 179 |
| BssECI | CCNNGG | 1 cut(s) | 48 |
| BssMI | GATC | 1 cut(s) | 287 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| BstC8I | GCNNGC | 1 cut(s) | 108 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 2 cut(s) | 199, 315 |
| BstFNI | CGCG | 1 cut(s) | 179 |
| BstKTI | GATC | 1 cut(s) | 290 |
| BstMAI | GTCTC | 1 cut(s) | 40 |
| BstMBI | GATC | 1 cut(s) | 287 |
| BstUI | CGCG | 1 cut(s) | 179 |
| BstV1I | GCAGC | 2 cut(s) | 43, 246 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 2 cut(s) | 199, 315 |
| Cac8I | GCNNGC | 1 cut(s) | 108 |
| CviAII | CATG | 3 cut(s) | 32, 49, 142 |
| CviJI | RGCY | 9 cut(s) | 26, 56, 89, 110, 130, 184, 205, 259, 281 |
| CviKI_1 | RGCY | 9 cut(s) | 26, 56, 89, 110, 130, 184, 205, 259, 281 |
| DpnI | GATC | 1 cut(s) | 289 |
| DpnII | GATC | 1 cut(s) | 287 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| EcoT22I | ATGCAT | 1 cut(s) | 217 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 3 cut(s) | 35, 52, 145 |
| FaiI | YATR | 5 cut(s) | 33, 50, 63, 75, 143 |
| FatI | CATG | 3 cut(s) | 31, 48, 141 |
| FauI | CCCGC | 1 cut(s) | 99 |
| Fnu4HI | GCNGC | 2 cut(s) | 57, 260 |
| FokI | GGATG | 2 cut(s) | 206, 302 |
| Fsp4HI | GCNGC | 2 cut(s) | 57, 260 |
| FspBI | CTAG | 1 cut(s) | 111 |
| GluI | GCNGC | 2 cut(s) | 57, 260 |
| Hin1II | CATG | 3 cut(s) | 35, 52, 145 |
| HinfI | GANTC | 2 cut(s) | 174, 232 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy188I | TCNGA | 2 cut(s) | 229, 292 |
| Hpy188III | TCNNGA | 1 cut(s) | 171 |
| Hpy99I | CGWCG | 1 cut(s) | 136 |
| HpyAV | CCTTC | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 2 cut(s) | 67, 215 |
| Hsp92II | CATG | 3 cut(s) | 35, 52, 145 |
| Kzo9I | GATC | 1 cut(s) | 287 |
| LmnI | GCTCC | 1 cut(s) | 50 |
| LpnPI | CCDG | 3 cut(s) | 156, 176, 296 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 246 |
| MaeI | CTAG | 1 cut(s) | 111 |
| MalI | GATC | 1 cut(s) | 289 |
| MboI | GATC | 1 cut(s) | 287 |
| MhlI | GDGCHC | 1 cut(s) | 47 |
| MluCI | AATT | 2 cut(s) | 15, 219 |
| MlyI | GAGTC | 1 cut(s) | 168 |
| MnlI | CCTC | 4 cut(s) | 16, 70, 73, 314 |
| Mph1103I | ATGCAT | 1 cut(s) | 217 |
| MseI | TTAA | 1 cut(s) | 218 |
| MspA1I | CMGCKG | 1 cut(s) | 259 |
| Mva1269I | GAATGC | 1 cut(s) | 217 |
| MvnI | CGCG | 1 cut(s) | 179 |
| NcoI | CCATGG | 1 cut(s) | 48 |
| NdeII | GATC | 1 cut(s) | 287 |
| NlaIII | CATG | 3 cut(s) | 35, 52, 145 |
| NsiI | ATGCAT | 1 cut(s) | 217 |
| PctI | GAATGC | 1 cut(s) | 217 |
| PfeI | GAWTC | 1 cut(s) | 232 |
| PkrI | GCNGC | 2 cut(s) | 58, 261 |
| PleI | GAGTC | 1 cut(s) | 168 |
| PpsI | GAGTC | 1 cut(s) | 168 |
| PshBI | ATTAAT | 1 cut(s) | 218 |
| PvuII | CAGCTG | 1 cut(s) | 259 |
| SaqAI | TTAA | 1 cut(s) | 218 |
| SatI | GCNGC | 2 cut(s) | 57, 260 |
| Sau3AI | GATC | 1 cut(s) | 287 |
| SchI | GAGTC | 1 cut(s) | 168 |
| SduI | GDGCHC | 1 cut(s) | 47 |
| SetI | ASST | 3 cut(s) | 207, 227, 261 |
| Sse9I | AATT | 2 cut(s) | 15, 219 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspMI | CTAG | 1 cut(s) | 111 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TasI | AATT | 2 cut(s) | 15, 219 |
| TfiI | GAWTC | 1 cut(s) | 232 |
| Tru1I | TTAA | 1 cut(s) | 218 |
| Tru9I | TTAA | 1 cut(s) | 218 |
| TseI | GCWGC | 2 cut(s) | 56, 259 |
| TspDTI | ATGAA | 3 cut(s) | 130, 210, 291 |
| TspGWI | ACGGA | 1 cut(s) | 149 |
| VspI | ATTAAT | 1 cut(s) | 218 |
| XspI | CTAG | 1 cut(s) | 111 |
| Zsp2I | ATGCAT | 1 cut(s) | 217 |