Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018558

Physical Location & Seq

Genomic Coordinates Reverse (-)

49834511 .. 49838976

Gene Structure 4466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG341000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTACGCCAAACTCGACCTCCCCAACTCCGTCCAACTCGTCCTCCACCTCACCCCCTCCCCCTCCGTCGTCACCTGGACCGCCCTCATCGCCGGCCTTGTCCACAACCGTCATTTCGCCTCCGCTCTCCTCCACTTCGCTAACATGCGCCGCGACTCCGTCCGCCCCAACGACTTCACATTCCCCTGCGCCTTCAAGGCCTCCGGCTTGCTTCGTCTCCCGGTGGTCGGAAAACAGGTGCATGCCCTCGCCGTTAAGGCGGGGCAGATATGTGATGTGTTCGTTGGGTGCAGTGCTTTTGACATGTACTGCAAAACTGGTCTGAGAGACGATGCAGGGAAGGTGTTTGATGAAATGCCTGAGAGAAACCTTGCTACTTGGAATGCCTACATTTCAAATGCGGTGCTTGACGGCCGACCGGTGAGTGCTGTAAACAAGTTTATTGAGTTTGTGAGGGTGGGTGGGGAGCTGAATTCGATTACCTTCTGTGCATTTCTCAATGCCTGTTCGGATAAGTCGGCTTTGGAACTTGGGAGGCAGTTACATGGGTTTGTGGTGCGATGTGGGTATGGGAAAGATGTGTCAGTGCTCAATGGGCTTGTGGATTTTTATGGCAAGTGTCGGGATGTTGGGTCGTCTAAGATGGTTTTCGATAGAATTGGTGAGGCTAATCATGTCTCTTGGTGCTCCATGGTGGCTGCTTATGTGCAAAACTATGAGGAGGAGAAGGCTTGTGAGTTGTTTTTGCGGGCTAGGAGAGAAGGGGTTGAGCATACGGATTTCATGGTTTCAAGTGTTTTGAGTGCTTGTTCTGGACTCGCGTGGCTTGAACAGGCAACTGGCAGGTGGGAAGAAGCCACTCTTGTGAGAAAGGAGATGAAAGATGTTGGCATAAAAAAGGGTGCAGGCTACAGTTGGATCGCAGTCAAGAATGCAGTCCACATCTTCCAAGCAAAGGACACCTCCCATGAAATGAATTCTGAAATTCAGGCAATGCTGACCTATTTAAGGAGGAAATTGCAGGAAGCTGGGTCAGAGATTCCCAATCGGGTAAAGAACAGACAGCTGCTTCCATTAGATGATGAAGCCCAGAGATCGGAACTCATCTCCCTCGCAAAACCCATCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

376

Amino Acids

41.74

Weight (kDa)

8.23

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 66	1.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381151
rosa_laevigata	RLG00000019600
rosa_multiflora	Rmu_co8089480.1_g000001 Rmu_co8089482.1_g000001 Rmu_sc0000376.1_g000028 Rmu_sc0003850.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278760 Rroxscaffold_6G00417530
rosa_samantha	Rh2AG341000 Rh2DG367800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	834
Acc36I	ACCTGC	1 cut(s)	834
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	2 cut(s)	153, 821
AciI	CCGC	7 cut(s)	81, 123, 151, 163, 260, 401, 748
AclWI	GGATC	1 cut(s)	926
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	3 cut(s)	472, 976, 984
AfaI	GTAC	2 cut(s)	5, 308
AfiI	CCNNNNNNNGG	4 cut(s)	227, 955, 1008, 1096
AflIII	ACRYGT	1 cut(s)	303
AgeI	ACCGGT	1 cut(s)	418
AgsI	TTSAA	4 cut(s)	196, 396, 792, 830
AjnI	CCWGG	1 cut(s)	74
AleI	CACNNNNGTG	1 cut(s)	863
AluBI	AGCT	3 cut(s)	469, 1028, 1066
AluI	AGCT	3 cut(s)	469, 1028, 1066
Alw21I	GWGCWC	2 cut(s)	591, 689
Alw26I	GTCTC	3 cut(s)	221, 321, 682
AlwI	GGATC	1 cut(s)	926
AoxI	GGCC	3 cut(s)	94, 198, 412
ApeKI	GCWGC	2 cut(s)	698, 1066
ApoI	RAATTY	3 cut(s)	472, 976, 984
AsiGI	ACCGGT	1 cut(s)	418
AspLEI	GCGC	2 cut(s)	150, 191
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	4 cut(s)	43, 64, 433, 674
AvaII	GGWCC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	591, 689
BbvI	GCAGC	2 cut(s)	685, 1053
BccI	CCATC	2 cut(s)	637, 1130
BceAI	ACGGC	2 cut(s)	236, 427
BciT130I	CCWGG	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	221, 321, 682
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	910
BfuAI	ACCTGC	1 cut(s)	834
BglI	GCCNNNNNGGC	2 cut(s)	197, 257
BisI	GCNGC	3 cut(s)	151, 699, 1067
BlsI	GCNGC	3 cut(s)	152, 700, 1068
Bme1390I	CCNGG	2 cut(s)	76, 221
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	76, 221
BmsI	GCATC	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	690
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 33, 57
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 955, 1008, 1096
Bse118I	RCCGGY	2 cut(s)	92, 418
Bse1I	ACTGG	2 cut(s)	322, 844
Bse3DI	GCAATG	1 cut(s)	999
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	2 cut(s)	631, 1122
BseLI	CCNNNNNNNGG	4 cut(s)	227, 955, 1008, 1096
BseMI	GCAATG	1 cut(s)	999
BseMII	CTCAG	2 cut(s)	314, 351
BseNI	ACTGG	2 cut(s)	322, 844
BseRI	GAGGAG	3 cut(s)	119, 734, 737
BseX3I	CGGCCG	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	685, 1053
BseYI	CCCAGC	1 cut(s)	1028
BsgI	GTGCAG	2 cut(s)	310, 924
Bsh1236I	CGCG	2 cut(s)	153, 821
Bsh1285I	CGRYCG	2 cut(s)	415, 419
BshFI	GGCC	3 cut(s)	96, 200, 414
BshTI	ACCGGT	1 cut(s)	418
BsiEI	CGRYCG	2 cut(s)	415, 419
BsiHKAI	GWGCWC	2 cut(s)	591, 689
BsiSI	CCGG	4 cut(s)	93, 204, 221, 419
BslI	CCNNNNNNNGG	4 cut(s)	227, 955, 1008, 1096
BsmAI	GTCTC	3 cut(s)	221, 321, 682
BsmBI	CGTCTC	2 cut(s)	221, 321
BsmI	GAATGC	2 cut(s)	388, 937
BsnI	GGCC	3 cut(s)	96, 200, 414
Bsp1286I	GDGCHC	2 cut(s)	591, 689
Bsp143I	GATC	2 cut(s)	918, 1094
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	7 cut(s)	81, 123, 151, 163, 260, 401, 748
BspANI	GGCC	3 cut(s)	96, 200, 414
BspCNI	CTCAG	2 cut(s)	315, 352
BspFNI	CGCG	2 cut(s)	153, 821
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	1 cut(s)	926
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	999
BsrFI	RCCGGY	2 cut(s)	92, 418
BsrI	ACTGG	2 cut(s)	322, 844
BssAI	RCCGGY	2 cut(s)	92, 418
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	2 cut(s)	918, 1094
BssT1I	CCWWGG	1 cut(s)	690
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	110, 914
BstC8I	GCNNGC	5 cut(s)	94, 209, 243, 750, 907
BstDEI	CTNAG	3 cut(s)	323, 360, 639
BstDSI	CCRYGG	1 cut(s)	690
BstENI	CCTNNNNNAGG	1 cut(s)	1006
BstF5I	GGATG	2 cut(s)	631, 1122
BstFNI	CGCG	2 cut(s)	153, 821
BstHHI	GCGC	2 cut(s)	150, 191
BstKTI	GATC	2 cut(s)	921, 1097
BstMAI	GTCTC	3 cut(s)	221, 321, 682
BstMBI	GATC	2 cut(s)	918, 1094
BstMCI	CGRYCG	2 cut(s)	415, 419
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 197, 257, 595
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	3 cut(s)	148, 245, 307
BstSCI	CCNGG	2 cut(s)	74, 219
BstSFI	CTRYAG	1 cut(s)	910
BstUI	CGCG	2 cut(s)	153, 821
BstV1I	GCAGC	2 cut(s)	685, 1053
BstZI	CGGCCG	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	96, 200, 414
BtgI	CCRYGG	1 cut(s)	690
BtgZI	GCGATG	2 cut(s)	73, 574
BtsCI	GGATG	2 cut(s)	631, 1122
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	298, 591
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	5 cut(s)	94, 209, 243, 750, 907
CfoI	GCGC	2 cut(s)	150, 191
Cfr10I	RCCGGY	2 cut(s)	92, 418
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	4, 307
CspAI	ACCGGT	1 cut(s)	418
CviAII	CATG	8 cut(s)	145, 242, 304, 545, 674, 691, 784, 968
CviQI	GTAC	2 cut(s)	4, 307
DdeI	CTNAG	3 cut(s)	323, 360, 639
DpnI	GATC	2 cut(s)	920, 1096
DpnII	GATC	2 cut(s)	918, 1094
EaeI	YGGCCR	1 cut(s)	412
EagI	CGGCCG	1 cut(s)	412
EciI	GGCGGA	1 cut(s)	152
EclXI	CGGCCG	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	690
Eco147I	AGGCCT	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	412
EcoNI	CCTNNNNNAGG	1 cut(s)	1006
EcoRI	GAATTC	2 cut(s)	472, 976
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	2 cut(s)	221, 321
FaeI	CATG	8 cut(s)	148, 245, 307, 548, 677, 694, 787, 971
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FatI	CATG	8 cut(s)	144, 241, 303, 544, 673, 690, 783, 967
FauI	CCCGC	2 cut(s)	253, 741
Fnu4HI	GCNGC	3 cut(s)	151, 699, 1067
FokI	GGATG	2 cut(s)	638, 1109
Fsp4HI	GCNGC	3 cut(s)	151, 699, 1067
FspBI	CTAG	1 cut(s)	753
GlaI	GCGC	2 cut(s)	149, 190
GluI	GCNGC	3 cut(s)	151, 699, 1067
GsaI	CCCAGC	1 cut(s)	1032
HaeIII	GGCC	3 cut(s)	96, 200, 414
HapII	CCGG	4 cut(s)	93, 204, 221, 419
HhaI	GCGC	2 cut(s)	150, 191
Hin1II	CATG	8 cut(s)	148, 245, 307, 548, 677, 694, 787, 971
Hin6I	GCGC	2 cut(s)	148, 189
HinP1I	GCGC	2 cut(s)	148, 189
HinfI	GANTC	3 cut(s)	155, 816, 1039
HpaII	CCGG	4 cut(s)	93, 204, 221, 419
HphI	GGTGA	4 cut(s)	43, 64, 433, 674
Hpy166II	GTNNAC	3 cut(s)	103, 433, 940
Hpy188I	TCNGA	6 cut(s)	230, 324, 511, 982, 1036, 1099
Hpy188III	TCNNGA	3 cut(s)	623, 813, 928
Hpy8I	GTNNAC	3 cut(s)	103, 433, 940
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	5 cut(s)	202, 334, 493, 721, 755
HpyCH4III	ACNGT	2 cut(s)	110, 914
HpyCH4V	TGCA	9 cut(s)	241, 291, 312, 335, 491, 709, 905, 935, 1021
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 197, 257, 595
HpyF3I	CTNAG	3 cut(s)	323, 360, 639
Hsp92II	CATG	8 cut(s)	148, 245, 307, 548, 677, 694, 787, 971
HspAI	GCGC	2 cut(s)	148, 189
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	918, 1094
LmnI	GCTCC	2 cut(s)	466, 692
Lsp1109I	GCAGC	2 cut(s)	685, 1053
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	753
MaeIII	GTNAC	2 cut(s)	70, 540
MalI	GATC	2 cut(s)	920, 1096
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	2 cut(s)	918, 1094
MboII	GAAGA	2 cut(s)	863, 937
MhlI	GDGCHC	2 cut(s)	591, 689
MluCI	AATT	5 cut(s)	472, 657, 976, 984, 1016
MlyI	GAGTC	2 cut(s)	149, 810
MmeI	TCCRAC	3 cut(s)	58, 208, 896
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	2 cut(s)	255, 1007
MslI	CAYNNNNRTG	1 cut(s)	863
MspA1I	CMGCKG	1 cut(s)	1066
MspI	CCGG	4 cut(s)	93, 204, 221, 419
MspR9I	CCNGG	2 cut(s)	76, 221
Mva1269I	GAATGC	2 cut(s)	388, 937
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	153, 821
MwoI	GCNNNNNNNGC	4 cut(s)	89, 197, 257, 595
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	2 cut(s)	918, 1094
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	8 cut(s)	148, 245, 307, 548, 677, 694, 787, 971
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	3 cut(s)	148, 245, 307
OliI	CACNNNNGTG	1 cut(s)	863
PaeI	GCATGC	1 cut(s)	245
PaqCI	CACCTGC	1 cut(s)	834
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	2 cut(s)	388, 937
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	1039
PflFI	GACNNNGTC	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	418
PkrI	GCNGC	3 cut(s)	152, 700, 1068
PleI	GAGTC	2 cut(s)	149, 810
PpsI	GAGTC	2 cut(s)	149, 810
PscI	ACATGT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	1028
PspGI	CCWGG	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	78
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	1066
RsaI	GTAC	2 cut(s)	5, 308
RsaNI	GTAC	2 cut(s)	4, 307
RseI	CAYNNNNRTG	1 cut(s)	863
SaqAI	TTAA	2 cut(s)	255, 1007
SatI	GCNGC	3 cut(s)	151, 699, 1067
Sau3AI	GATC	2 cut(s)	918, 1094
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	2 cut(s)	149, 810
ScrFI	CCNGG	2 cut(s)	76, 221
SduI	GDGCHC	2 cut(s)	591, 689
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	910
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	863
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	5 cut(s)	472, 657, 976, 984, 1016
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	7 cut(s)	81, 123, 151, 163, 260, 401, 748
SspMI	CTAG	1 cut(s)	753
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	74, 219
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	2 cut(s)	110, 914
TaqI	TCGA	3 cut(s)	15, 476, 651
TasI	AATT	5 cut(s)	472, 657, 976, 984, 1016
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	1039
Tru1I	TTAA	2 cut(s)	255, 1007
Tru9I	TTAA	2 cut(s)	255, 1007
TscAI	CASTG	2 cut(s)	298, 591
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	698, 1066
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	6 cut(s)	366, 772, 893, 984, 989, 1098
TspGWI	ACGGA	4 cut(s)	19, 55, 148, 791
TspRI	CASTG	2 cut(s)	298, 591
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	1006
XapI	RAATTY	3 cut(s)	472, 976, 984
XceI	RCATGY	3 cut(s)	148, 245, 307
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.