Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8089482.1

Orthogroup ID

OG0018558

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 592

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8089482.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

taacatgcgccgcgactccgtccgccccaacgacttcacattcccctgcgccttcaaggcctccggcttgcttcgtctcccggtggtcggaaaacaggtgcatgccctcgccgtcaaggccgggcagatatgtgatgtctttgttgggtgcagtgcttttgatatgtactgcaaaactgggctgagagacgatgcagggaaagtgtttgatgaaatgcctgagagaaaccttgctacttggaatgcctacatttcgaatgcggtgcttgaccggcggccggtgagtgctgtaaacaagtttattgagtttgtgagggccggtggggagccgaattcgattaccttctgtgcatttctcaatgcctgttcggatacgtccgctttggaacttgggaggcagttacatgggtttgtgatgcgatgtgggtttgggaaagatgtgtcagtgctcaatgggcttgtggatttttatggcaagtgtcgggatgttgggtcgtctaagatggtttttgatagaattggtgaggctaatcatgtctcttggtgctccatggtggctgcttatgtgcaaaactatgaggaggagaaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

197

Amino Acids

21.73

Weight (kDa)

7.67

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381151
rosa_laevigata	RLG00000019600
rosa_multiflora	Rmu_co8089480.1_g000001 Rmu_co8089482.1_g000001 Rmu_sc0000376.1_g000028 Rmu_sc0003850.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278760 Rroxscaffold_6G00417530
rosa_samantha	Rh2AG341000 Rh2DG367800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	5 cut(s)	11, 23, 261, 275, 379
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	87, 278
AgsI	TTSAA	1 cut(s)	56
Alw21I	GWGCWC	2 cut(s)	451, 549
Alw26I	GTCTC	3 cut(s)	81, 181, 542
AoxI	GGCC	4 cut(s)	58, 118, 276, 316
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	10, 51
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	2 cut(s)	81, 122
AsuHPI	GGTGA	2 cut(s)	293, 534
AsuII	TTCGAA	1 cut(s)	255
Bbv12I	GWGCWC	2 cut(s)	451, 549
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	2 cut(s)	81, 122
BcoDI	GTCTC	3 cut(s)	81, 181, 542
BfuI	GTATCC	1 cut(s)	365
BglI	GCCNNNNNGGC	2 cut(s)	57, 117
BisI	GCNGC	3 cut(s)	11, 276, 559
BlsI	GCNGC	3 cut(s)	12, 277, 560
Bme1390I	CCNGG	2 cut(s)	81, 122
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	81, 122
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	2 cut(s)	182, 406
BmuI	ACTGGG	1 cut(s)	187
Bpu14I	TTCGAA	1 cut(s)	255
BpuMI	CCSGG	2 cut(s)	81, 122
BsaJI	CCNNGG	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 278
Bse118I	RCCGGY	3 cut(s)	271, 278, 318
Bse1I	ACTGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	2 cut(s)	87, 278
BseMII	CTCAG	2 cut(s)	174, 211
BseNI	ACTGG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	4 cut(s)	60, 120, 278, 318
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	451, 549
BsiSI	CCGG	6 cut(s)	64, 81, 121, 272, 279, 319
BslI	CCNNNNNNNGG	2 cut(s)	87, 278
BsmAI	GTCTC	3 cut(s)	81, 181, 542
BsmBI	CGTCTC	2 cut(s)	81, 181
BsmI	GAATGC	2 cut(s)	248, 263
BsnI	GGCC	4 cut(s)	60, 120, 278, 318
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	451, 549
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	5 cut(s)	11, 23, 261, 275, 379
BspANI	GGCC	4 cut(s)	60, 120, 278, 318
BspCNI	CTCAG	2 cut(s)	175, 212
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	255
BsrFI	RCCGGY	3 cut(s)	271, 278, 318
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	3 cut(s)	271, 278, 318
BssECI	CCNNGG	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	550
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	69, 103
BstDEI	CTNAG	3 cut(s)	183, 220, 499
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	1 cut(s)	491
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	10, 51
BstMAI	GTCTC	3 cut(s)	81, 181, 542
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 117, 272, 455
BstNSI	RCATGY	2 cut(s)	8, 105
BstSCI	CCNGG	2 cut(s)	79, 120
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	545
BstZI	CGGCCG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	4 cut(s)	60, 120, 278, 318
BtgI	CCRYGG	1 cut(s)	550
BtgZI	GCGATG	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	491
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 451
Cac8I	GCNNGC	2 cut(s)	69, 103
CfoI	GCGC	2 cut(s)	10, 51
Cfr10I	RCCGGY	3 cut(s)	271, 278, 318
Cfr13I	GGNCC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	5 cut(s)	5, 102, 405, 534, 551
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	3 cut(s)	183, 220, 499
EaeI	YGGCCR	1 cut(s)	276
EagI	CGGCCG	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	550
Eco147I	AGGCCT	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
Esp3I	CGTCTC	2 cut(s)	81, 181
FaeI	CATG	5 cut(s)	8, 105, 408, 537, 554
FatI	CATG	5 cut(s)	4, 101, 404, 533, 550
Fnu4HI	GCNGC	3 cut(s)	11, 276, 559
FokI	GGATG	1 cut(s)	498
Fsp4HI	GCNGC	3 cut(s)	11, 276, 559
GlaI	GCGC	2 cut(s)	9, 50
GluI	GCNGC	3 cut(s)	11, 276, 559
HaeIII	GGCC	4 cut(s)	60, 120, 278, 318
HapII	CCGG	6 cut(s)	64, 81, 121, 272, 279, 319
HhaI	GCGC	2 cut(s)	10, 51
Hin1II	CATG	5 cut(s)	8, 105, 408, 537, 554
Hin6I	GCGC	2 cut(s)	8, 49
HinP1I	GCGC	2 cut(s)	8, 49
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	6 cut(s)	64, 81, 121, 272, 279, 319
HphI	GGTGA	2 cut(s)	293, 534
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	2 cut(s)	90, 371
Hpy188III	TCNNGA	1 cut(s)	483
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	62, 353, 581
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	6 cut(s)	101, 151, 172, 195, 351, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 117, 272, 455
HpyF3I	CTNAG	3 cut(s)	183, 220, 499
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	5 cut(s)	8, 105, 408, 537, 554
HspAI	GCGC	2 cut(s)	8, 49
LmnI	GCTCC	2 cut(s)	326, 552
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	2 cut(s)	182, 406
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	451, 549
MluCI	AATT	2 cut(s)	332, 517
MlyI	GAGTC	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	7 cut(s)	71, 117, 307, 388, 518, 572, 575
MspI	CCGG	6 cut(s)	64, 81, 121, 272, 279, 319
MspR9I	CCNGG	2 cut(s)	81, 122
Mva1269I	GAATGC	2 cut(s)	248, 263
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	4 cut(s)	57, 117, 272, 455
NciI	CCSGG	2 cut(s)	81, 122
NcoI	CCATGG	1 cut(s)	550
NlaIII	CATG	5 cut(s)	8, 105, 408, 537, 554
NlaIV	GGNNCC	1 cut(s)	328
NspI	RCATGY	2 cut(s)	8, 105
NspV	TTCGAA	1 cut(s)	255
PaeI	GCATGC	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	60
PctI	GAATGC	2 cut(s)	248, 263
PflFI	GACNNNGTC	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	12, 277, 560
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SatI	GCNGC	3 cut(s)	11, 276, 559
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	1 cut(s)	9
ScrFI	CCNGG	2 cut(s)	81, 122
SduI	GDGCHC	2 cut(s)	451, 549
SetI	ASST	4 cut(s)	100, 232, 345, 378
SfaNI	GCATC	2 cut(s)	182, 406
SfuI	TTCGAA	1 cut(s)	255
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	2 cut(s)	332, 517
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	5 cut(s)	11, 23, 261, 275, 379
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	79, 120
StyI	CCWWGG	1 cut(s)	550
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	255, 336
TasI	AATT	2 cut(s)	332, 517
TatI	WGTACW	1 cut(s)	166
TauI	GCSGC	2 cut(s)	13, 278
TscAI	CASTG	2 cut(s)	158, 451
TseI	GCWGC	1 cut(s)	558
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	2 cut(s)	158, 451
Tth111I	GACNNNGTC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	2 cut(s)	8, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.