Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018558

Physical Location & Seq

Genomic Coordinates Reverse (-)

1635610 .. 1637824

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATTTGGGAACGGCGTTAGCTAACGAGAAACTCGCAACAAGTTTTGTACAAGGGCGCTATGGAAAGTTGGAAACCCAACAACAGTGGTTCTTGAGGAGAAGATCAGGGTCGGGTGCTCTTGAAGGAGTAGAATCAAAACTGATGCTGGCATCTGGAATGTGTGCTAGCGTAGTCTCGTTGATGGCATTGGTTTCAGCTGGTGGGCATGTTGTGACAACAACAGATTGCTATAGGAAGGGTCAATATTTATTGAGACCATCCTTCCCAAAATGGGGATCAAGAACAGATGCTCCGCTTAATCTGCTGGTAGCTGTTGGCATGTTTGCTCGTAAAATTTTTATGAAAGGTAAATTAAGGAATGTTAATACTAGCAGCTGCTTCAAATTTAGCTATTTGTTCAGATTCATGCCTCTTGGTTACTATCACTTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0001887 GO:0003674 GO:0003824 GO:0003962 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko00920 ko01100 ko01110 ko01130 ko01230 map00270 map00450 map00920 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Cys_Met_Meta_PP

Protein Analysis

145

Amino Acids

16.14

Weight (kDa)

9.98

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cys_Met_Meta_PP	PF01053	39 - 97	1.3e-09	Cys/Met metabolism PLP-dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381151
rosa_laevigata	RLG00000019600
rosa_multiflora	Rmu_co8089480.1_g000001 Rmu_co8089482.1_g000001 Rmu_sc0000376.1_g000028 Rmu_sc0003850.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278760 Rroxscaffold_6G00417530
rosa_samantha	Rh2AG341000 Rh2DG367800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	2 cut(s)	336, 386
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	274, 275
AgsI	TTSAA	2 cut(s)	125, 385
AloI	GAACNNNNNNTCC	2 cut(s)	277, 309
AluBI	AGCT	5 cut(s)	23, 200, 314, 378, 393
AluI	AGCT	5 cut(s)	23, 200, 314, 378, 393
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	181, 250
AlwI	GGATC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	375, 378
ApoI	RAATTY	2 cut(s)	336, 386
AspLEI	GCGC	1 cut(s)	60
AsuNHI	GCTAGC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	365, 387
BccI	CCATC	2 cut(s)	178, 268
BceAI	ACGGC	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	181, 250
BfaI	CTAG	2 cut(s)	168, 372
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	2 cut(s)	376, 379
BlsI	GCNGC	2 cut(s)	377, 380
BmsI	GCATC	3 cut(s)	135, 161, 280
BmtI	GCTAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 275
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	2 cut(s)	274, 275
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	365, 387
BsiHKAI	GWGCWC	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	274, 275
BsmAI	GTCTC	2 cut(s)	181, 250
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	104, 278
BspACI	CCGC	1 cut(s)	296
BspOI	GCTAGC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	49
BssMI	GATC	2 cut(s)	104, 278
Bst4CI	ACNGT	1 cut(s)	87
BstAUI	TGTACA	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	150, 169
BstF5I	GGATG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	107, 281
BstMAI	GTCTC	2 cut(s)	181, 250
BstMBI	GATC	2 cut(s)	104, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNSI	RCATGY	2 cut(s)	212, 325
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	365, 387
BtsCI	GGATG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	150, 169
CfoI	GCGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	50
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviAII	CATG	3 cut(s)	209, 322, 409
CviJI	RGCY	5 cut(s)	23, 200, 314, 378, 393
CviKI_1	RGCY	5 cut(s)	23, 200, 314, 378, 393
CviQI	GTAC	1 cut(s)	50
DpnI	GATC	2 cut(s)	106, 280
DpnII	GATC	2 cut(s)	104, 278
Eco31I	GGTCTC	1 cut(s)	250
FaeI	CATG	3 cut(s)	212, 325, 412
FaiI	YATR	6 cut(s)	63, 210, 234, 323, 344, 410
FatI	CATG	3 cut(s)	208, 321, 408
Fnu4HI	GCNGC	2 cut(s)	376, 379
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	376, 379
FspBI	CTAG	2 cut(s)	168, 372
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	376, 379
HaeII	RGCGCY	1 cut(s)	61
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	212, 325, 412
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	134, 405
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	4 cut(s)	94, 122, 156, 282
HpyAV	CCTTC	3 cut(s)	119, 232, 274
HpyCH4III	ACNGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	212, 325, 412
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	104, 278
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	5 cut(s)	93, 134, 141, 186, 293
Lsp1109I	GCAGC	2 cut(s)	365, 387
LweI	GCATC	3 cut(s)	135, 161, 280
MaeI	CTAG	2 cut(s)	168, 372
MaeIII	GTNAC	2 cut(s)	214, 419
MalI	GATC	2 cut(s)	106, 280
MboI	GATC	2 cut(s)	104, 278
MboII	GAAGA	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	3 cut(s)	336, 353, 386
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	90, 423
MseI	TTAA	3 cut(s)	300, 356, 366
MspA1I	CMGCKG	2 cut(s)	200, 378
MwoI	GCNNNNNNNGC	1 cut(s)	304
NdeII	GATC	2 cut(s)	104, 278
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	212, 325, 412
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	2 cut(s)	212, 325
PfeI	GAWTC	2 cut(s)	134, 405
PkrI	GCNGC	2 cut(s)	377, 380
PvuII	CAGCTG	2 cut(s)	200, 378
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	300, 356, 366
SatI	GCNGC	2 cut(s)	376, 379
Sau3AI	GATC	2 cut(s)	104, 278
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	6 cut(s)	25, 202, 316, 352, 380, 395
SfaNI	GCATC	3 cut(s)	135, 161, 280
SfcI	CTRYAG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	336, 353, 386
SsiI	CCGC	1 cut(s)	296
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	2 cut(s)	168, 372
TaaI	ACNGT	1 cut(s)	87
TasI	AATT	3 cut(s)	336, 353, 386
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	134, 405
Tru1I	TTAA	3 cut(s)	300, 356, 366
Tru9I	TTAA	3 cut(s)	300, 356, 366
TscAI	CASTG	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	375, 378
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	359, 397
TspRI	CASTG	1 cut(s)	92
XapI	RAATTY	2 cut(s)	336, 386
XceI	RCATGY	2 cut(s)	212, 325
XspI	CTAG	2 cut(s)	168, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.