RLG00000019732

FBD-associated F-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
56083652 .. 56085440
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019732

Sequence Viewer

Length: 1455 bp
ATGGCTTCATCTTCTGCAGAGTCATCGAGAAGAGGAGCAAAGAGGCAACGCCAAAACAACCGCAACCATCATGATGATTCCTGGGTGTTTGATGTTCACAGTGATCTCGTGGAGGAAATCTTCACTCACCTGCCAATACGGCAGTGCGTGCAGATAGGGCTGGTGGCCAAGGAGTTTCGAGGAACATGGCTGAAATGCCGAAATCTCGACTTTGGGAGAGAATTCGCAGCCACCCAACCCCACCGGTTGGCTTACTGCACTGCCGTGGAACATGCCATTGAATCCCACCACAAAGAGGGAAAGATCAAAACCCTCCGGCTATGTTTCGATCCGTCCGGTGTTGAGTTTCTTCTGGAGAAGTGGGTTCGGAAATCAGTCAAGAAAGGAGTCGAGGAGCTCGATCTCGACATCTTTCAGGCGACGGTGCCGTTTTGCTTCCCTACTAATGCTGAAGAGGCAAAGCTGAAAGAGCTCAAGCTCTATTATTCGGTGATCCAGATGCCGTTTAATCTGAAGGCTCTGGTATCTCTGACCACCTTGGTTCTGAGGCAGGTTGATCTGACGGACCTGATCATTGAGGCTCTGTTCGAGAACTGTGTCCATCTCGAGACCTTTGACATGGCTGATTGCTATGGAGTAAGAAATATGAAGGTGAAGGCGAACAACAGATTTAAGGTGTTAATGGTTGGAGGGTGCCCGAAGATATCGAGCATCAAAATTGATGCCCCAAGGCTTCGATGTCTGTACTACAATGGGGTGGTAAAACGATTCAACATATCTGAGCCTTTTTTGTTCTTGAACGAGGTCATTTTGAATTTCTTGCCCTCAAAAGGGTACACCAAACCTTGGCTTGTTGAGAAGCTTGTTGCTGATACCTCCAGTGTGAGAGTGCTCACCATTACTAGCACATTTCTTGAGGGCTTGGCTGCCAAGATTCGCCGCGGATGTATTCGAGAGATGCAGTTTTGCTTCTGGAACTTGAGGGAGCTCCAAATAGTCATGCAGGATCCAAGCTTCACTAATGCCGGAGATGTTGCGTCTTTTATCAAAAACTGTCCAAGGCTGGAGAATTTGTTTATTGAGCTGAATGAGAATACTTATGAGAGCGCAATTTACCGTGATATGCTACAAAATCCAGCAATGGATCACAATATGAGCTTCCTCAATGCCCTCAAATTTGTCAAAATAAGAGGGTTTAAGGTTACAAATAAGCAACACGAACAGTTAGCAAGGTTCATCTTAGACAACGCGAGGTTCTTAGAGCGTATGGTCCTCCTATGGCCTACGAACCGATACCATTTATGCCGCAGTGTGCCTTATCTACCTCTCAGTGAACAGATCAGGTACGCCAACATCCTTGCATGTTGGCAACTGTCTGCCAGAGCGGAAATTATATTGTGTGACCAAATGGAGGACATGTATGGATTCCCGAAACATGTAAGGAAATGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

56.3

Weight (kDa)

8.91

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 97 - 425 1.5e-29 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 118 - 250 2.3e-07 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 387 - 425 1.6e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016662)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 138, 541
AccB1I GGYRCC 2 cut(s) 424, 693
AccB7I CCANNNNNTGG 2 cut(s) 247, 846
AccBSI CCGCTC 1 cut(s) 1385
AccII CGCG 2 cut(s) 942, 1250
AciI CCGC 5 cut(s) 61, 940, 942, 1306, 1385
AclWI GGATC 5 cut(s) 323, 487, 1001, 1014, 1152
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 4 cut(s) 221, 814, 1069, 1175
AcuI CTGAAG 2 cut(s) 471, 533
AfaI GTAC 3 cut(s) 746, 836, 1346
AfiI CCNNNNNNNGG 6 cut(s) 247, 295, 830, 831, 846, 1411
AflIII ACRYGT 2 cut(s) 1416, 1435
AgeI ACCGGT 1 cut(s) 243
AgsI TTSAA 4 cut(s) 281, 772, 799, 814
AjnI CCWGG 1 cut(s) 80
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 9 cut(s) 397, 463, 472, 478, 862, 988, 1014, 1084, 1158
AluI AGCT 9 cut(s) 397, 463, 472, 478, 862, 988, 1014, 1084, 1158
Alw21I GWGCWC 4 cut(s) 399, 474, 894, 990
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 5 cut(s) 323, 487, 1001, 1014, 1152
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 2 cut(s) 165, 1280
ApeKI GCWGC 2 cut(s) 227, 926
ApoI RAATTY 4 cut(s) 221, 814, 1069, 1175
AsiGI ACCGGT 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 1448
AspLEI GCGC 1 cut(s) 1109
AspS9I GGNCC 2 cut(s) 565, 1270
AsuHPI GGTGA 4 cut(s) 119, 502, 664, 886
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 2 cut(s) 565, 1270
BaeGI GKGCMC 1 cut(s) 698
BalI TGGCCA 1 cut(s) 167
BamHI GGATCC 1 cut(s) 1006
BanI GGYRCC 2 cut(s) 424, 693
BanII GRGCYC 3 cut(s) 399, 474, 990
BauI CACGAG 1 cut(s) 107
Bbv12I GWGCWC 4 cut(s) 399, 474, 894, 990
BbvI GCAGC 2 cut(s) 239, 913
BccI CCATC 2 cut(s) 75, 609
BceAI ACGGC 4 cut(s) 155, 248, 412, 487
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 1 cut(s) 82
BclI TGATCA 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 903, 1453
BfmI CTRYAG 1 cut(s) 15
BfuAI ACCTGC 2 cut(s) 138, 541
BglI GCCNNNNNGGC 1 cut(s) 139
BisI GCNGC 4 cut(s) 228, 927, 940, 1306
BlsI GCNGC 4 cut(s) 229, 928, 941, 1307
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 2 cut(s) 565, 1270
BmeT110I CYCGRG 1 cut(s) 605
BmgT120I GGNCC 2 cut(s) 565, 1270
BmiI GGNNCC 3 cut(s) 426, 695, 1008
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 4 cut(s) 489, 712, 720, 948
BpmI CTGGAG 3 cut(s) 374, 862, 1085
BpuEI CTTGAG 3 cut(s) 458, 935, 1000
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 8 cut(s) 81, 168, 264, 537, 728, 845, 940, 1058
BsaWI WCCGGW 2 cut(s) 243, 335
BsaXI ACNNNNNCTCC 4 cut(s) 1058, 1088, 1403, 1433
Bsc4I CCNNNNNNNGG 6 cut(s) 247, 295, 830, 831, 846, 1411
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 8 cut(s) 81, 168, 264, 537, 728, 845, 940, 1058
BseGI GGATG 2 cut(s) 950, 1353
BseLI CCNNNNNNNGG 6 cut(s) 247, 295, 830, 831, 846, 1411
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 3 cut(s) 536, 771, 1342
BseNI ACTGG 1 cut(s) 879
BseRI GAGGAG 2 cut(s) 48, 407
BseSI GKGCMC 1 cut(s) 698
BseXI GCAGC 2 cut(s) 239, 913
BsgI GTGCAG 2 cut(s) 170, 241
Bsh1236I CGCG 2 cut(s) 942, 1250
BshFI GGCC 2 cut(s) 167, 1282
BshNI GGYRCC 2 cut(s) 424, 693
BshTI ACCGGT 1 cut(s) 243
BsiHKAI GWGCWC 4 cut(s) 399, 474, 894, 990
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 4 cut(s) 244, 316, 336, 1026
BslI CCNNNNNNNGG 6 cut(s) 247, 295, 830, 831, 846, 1411
BsmAI GTCTC 1 cut(s) 602
BsnI GGCC 2 cut(s) 167, 1282
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 5 cut(s) 399, 474, 698, 894, 990
BspACI CCGC 5 cut(s) 61, 940, 942, 1306, 1385
BspANI GGCC 2 cut(s) 167, 1282
BspCNI CTCAG 3 cut(s) 537, 772, 1341
BspFNI CGCG 2 cut(s) 942, 1250
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 3 cut(s) 426, 695, 1008
BspMAI CTGCAG 1 cut(s) 19
BspMI ACCTGC 2 cut(s) 138, 541
BspPI GGATC 5 cut(s) 323, 487, 1001, 1014, 1152
BspT107I GGYRCC 2 cut(s) 424, 693
BspTNI GGTCTC 1 cut(s) 602
BsrBI CCGCTC 1 cut(s) 1385
BsrDI GCAATG 1 cut(s) 1146
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 1 cut(s) 879
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 8 cut(s) 81, 168, 264, 537, 728, 845, 940, 1058
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 5 cut(s) 168, 537, 728, 845, 1058
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 7 cut(s) 101, 424, 596, 1055, 1118, 1224, 1374
Bst6I CTCTTC 2 cut(s) 25, 447
BstAPI GCANNNNNTGC 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 5 cut(s) 545, 780, 1240, 1258, 1328
BstDSI CCRYGG 2 cut(s) 264, 940
BstF5I GGATG 2 cut(s) 950, 1353
BstFNI CGCG 2 cut(s) 942, 1250
BstHHI GCGC 1 cut(s) 1109
BstMAI GTCTC 1 cut(s) 602
BstMWI GCNNNNNNNGC 5 cut(s) 139, 148, 157, 455, 469
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 4 cut(s) 275, 1365, 1420, 1439
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 2 cut(s) 942, 1250
BstV1I GCAGC 2 cut(s) 239, 913
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
BsuRI GGCC 2 cut(s) 167, 1282
BtgI CCRYGG 2 cut(s) 264, 940
BtsCI GGATG 2 cut(s) 950, 1353
BtsI GCAGTG 3 cut(s) 149, 258, 1315
BtsIMutI CAGTG 6 cut(s) 106, 149, 258, 886, 1315, 1336
BveI ACCTGC 2 cut(s) 138, 541
Cac8I GCNNGC 1 cut(s) 149
CciI TCATGA 1 cut(s) 70
CfoI GCGC 1 cut(s) 1109
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 565, 1270
Cfr42I CCGCGG 1 cut(s) 943
CseI GACGC 1 cut(s) 1026
Csp6I GTAC 3 cut(s) 745, 835, 1345
CspAI ACCGGT 1 cut(s) 243
CviAII CATG 8 cut(s) 71, 186, 272, 619, 1000, 1362, 1417, 1436
CviQI GTAC 3 cut(s) 745, 835, 1345
DdeI CTNAG 5 cut(s) 545, 780, 1240, 1258, 1328
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 25, 447
EarI CTCTTC 2 cut(s) 25, 447
Ecl136II GAGCTC 3 cut(s) 397, 472, 988
Eco130I CCWWGG 5 cut(s) 168, 537, 728, 845, 1058
Eco24I GRGCYC 3 cut(s) 399, 474, 990
Eco31I GGTCTC 1 cut(s) 602
Eco32I GATATC 1 cut(s) 705
Eco47I GGWCC 2 cut(s) 565, 1270
Eco53kI GAGCTC 3 cut(s) 397, 472, 988
Eco57I CTGAAG 2 cut(s) 471, 533
Eco88I CYCGRG 1 cut(s) 605
EcoICRI GAGCTC 3 cut(s) 397, 472, 988
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 80
EcoRV GATATC 1 cut(s) 705
EcoT14I CCWWGG 5 cut(s) 168, 537, 728, 845, 1058
EcoT38I GRGCYC 3 cut(s) 399, 474, 990
ErhI CCWWGG 5 cut(s) 168, 537, 728, 845, 1058
FaeI CATG 8 cut(s) 74, 189, 275, 622, 1003, 1365, 1420, 1439
FatI CATG 8 cut(s) 70, 185, 271, 618, 999, 1361, 1416, 1435
FbaI TGATCA 1 cut(s) 570
Fnu4HI GCNGC 4 cut(s) 228, 927, 940, 1306
FokI GGATG 2 cut(s) 957, 1340
FriOI GRGCYC 3 cut(s) 399, 474, 990
Fsp4HI GCNGC 4 cut(s) 228, 927, 940, 1306
FspBI CTAG 2 cut(s) 903, 1453
GlaI GCGC 1 cut(s) 1108
GluI GCNGC 4 cut(s) 228, 927, 940, 1306
GsuI CTGGAG 3 cut(s) 374, 862, 1085
HaeIII GGCC 2 cut(s) 167, 1282
HapII CCGG 4 cut(s) 244, 316, 336, 1026
HgaI GACGC 1 cut(s) 1026
HhaI GCGC 1 cut(s) 1109
Hin1II CATG 8 cut(s) 74, 189, 275, 622, 1003, 1365, 1420, 1439
Hin6I GCGC 1 cut(s) 1107
HinP1I GCGC 1 cut(s) 1107
HindIII AAGCTT 2 cut(s) 860, 1012
HinfI GANTC 7 cut(s) 20, 77, 281, 387, 768, 934, 1425
HpaII CCGG 4 cut(s) 244, 316, 336, 1026
HphI GGTGA 4 cut(s) 119, 502, 664, 886
Hpy166II GTNNAC 3 cut(s) 97, 837, 1334
Hpy188I TCNGA 6 cut(s) 369, 513, 531, 546, 561, 781
Hpy8I GTNNAC 3 cut(s) 97, 837, 1334
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 3 cut(s) 508, 643, 649
HpyCH4III ACNGT 7 cut(s) 101, 424, 596, 1055, 1118, 1224, 1374
HpyCH4V TGCA 6 cut(s) 17, 151, 258, 961, 1003, 1361
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 148, 157, 455, 469
HpyF3I CTNAG 5 cut(s) 545, 780, 1240, 1258, 1328
Hsp92II CATG 8 cut(s) 74, 189, 275, 622, 1003, 1365, 1420, 1439
HspAI GCGC 1 cut(s) 1107
Ksp22I TGATCA 1 cut(s) 570
KspI CCGCGG 1 cut(s) 943
LmnI GCTCC 4 cut(s) 35, 394, 985, 993
Lsp1109I GCAGC 2 cut(s) 239, 913
LweI GCATC 4 cut(s) 489, 712, 720, 948
MaeI CTAG 2 cut(s) 903, 1453
MaeIII GTNAC 2 cut(s) 1201, 1400
MbiI CCGCTC 1 cut(s) 1385
MboII GAAGA 6 cut(s) 3, 42, 112, 341, 464, 712
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 5 cut(s) 399, 474, 698, 894, 990
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 7 cut(s) 221, 717, 814, 1069, 1110, 1175, 1389
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 29, 396
MmeI TCCRAC 1 cut(s) 667
Mox20I TGGCCA 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 1448
MscI TGGCCA 1 cut(s) 167
MseI TTAA 4 cut(s) 507, 672, 680, 1197
MslI CAYNNNNRTG 2 cut(s) 72, 263
Msp20I TGGCCA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 942
MspI CCGG 4 cut(s) 244, 316, 336, 1026
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 2 cut(s) 942, 1250
MwoI GCNNNNNNNGC 5 cut(s) 139, 148, 157, 455, 469
NlaIII CATG 8 cut(s) 74, 189, 275, 622, 1003, 1365, 1420, 1439
NlaIV GGNNCC 3 cut(s) 426, 695, 1008
NmuCI GTSAC 1 cut(s) 1400
NspI RCATGY 4 cut(s) 275, 1365, 1420, 1439
OliI CACNNNNGTG 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 605
PagI TCATGA 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 138
PciI ACATGT 2 cut(s) 1416, 1435
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 1448
PfeI GAWTC 5 cut(s) 77, 281, 768, 934, 1425
PflMI CCANNNNNTGG 2 cut(s) 247, 846
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 4 cut(s) 229, 928, 941, 1307
PleI GAGTC 2 cut(s) 28, 395
PpsI GAGTC 2 cut(s) 28, 395
PscI ACATGT 2 cut(s) 1416, 1435
Psp124BI GAGCTC 3 cut(s) 399, 474, 990
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 3 cut(s) 426, 695, 1008
PspPI GGNCC 2 cut(s) 565, 1270
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 1006
RsaI GTAC 3 cut(s) 746, 836, 1346
RsaNI GTAC 3 cut(s) 745, 835, 1345
RseI CAYNNNNRTG 2 cut(s) 72, 263
SacI GAGCTC 3 cut(s) 399, 474, 990
SacII CCGCGG 1 cut(s) 943
SaqAI TTAA 4 cut(s) 507, 672, 680, 1197
SatI GCNGC 4 cut(s) 228, 927, 940, 1306
Sau96I GGNCC 2 cut(s) 565, 1270
SchI GAGTC 2 cut(s) 29, 396
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 5 cut(s) 399, 474, 698, 894, 990
SfaNI GCATC 4 cut(s) 489, 712, 720, 948
SfcI CTRYAG 1 cut(s) 15
Sfr274I CTCGAG 1 cut(s) 605
Sfr303I CCGCGG 1 cut(s) 943
SgrBI CCGCGG 1 cut(s) 943
SinI GGWCC 2 cut(s) 565, 1270
SlaI CTCGAG 1 cut(s) 605
SmiMI CAYNNNNRTG 2 cut(s) 72, 263
SmlI CTYRAG 4 cut(s) 473, 605, 914, 979
SmoI CTYRAG 4 cut(s) 473, 605, 914, 979
Sse9I AATT 7 cut(s) 221, 717, 814, 1069, 1110, 1175, 1389
SsiI CCGC 5 cut(s) 61, 940, 942, 1306, 1385
SspMI CTAG 2 cut(s) 903, 1453
SstI GAGCTC 3 cut(s) 399, 474, 990
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 5 cut(s) 168, 537, 728, 845, 1058
TaaI ACNGT 7 cut(s) 101, 424, 596, 1055, 1118, 1224, 1374
TasI AATT 7 cut(s) 221, 717, 814, 1069, 1110, 1175, 1389
TatI WGTACW 1 cut(s) 744
TauI GCSGC 2 cut(s) 942, 1308
TfiI GAWTC 5 cut(s) 77, 281, 768, 934, 1425
Tru1I TTAA 4 cut(s) 507, 672, 680, 1197
Tru9I TTAA 4 cut(s) 507, 672, 680, 1197
TscAI CASTG 6 cut(s) 106, 149, 265, 886, 1315, 1336
TseFI GTSAC 1 cut(s) 1400
TseI GCWGC 2 cut(s) 227, 926
Tsp45I GTSAC 1 cut(s) 1400
TspDTI ATGAA 2 cut(s) 662, 1225
TspGWI ACGGA 2 cut(s) 321, 578
TspRI CASTG 6 cut(s) 106, 149, 265, 886, 1315, 1336
Van91I CCANNNNNTGG 2 cut(s) 247, 846
VpaK11BI GGWCC 2 cut(s) 565, 1270
XapI RAATTY 4 cut(s) 221, 814, 1069, 1175
XceI RCATGY 4 cut(s) 275, 1365, 1420, 1439
XhoI CTCGAG 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 1448
XspI CTAG 2 cut(s) 903, 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.