Rh5DG047400

FBD-associated F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016662
Physical Location & Seq
Reverse (-)
3931026 .. 3931340
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG047400.1

Sequence Viewer

Length: 315 bp
ATGGATCACAATATGAGCTTCCTTAATGCCCTCAAATTTGTCAAAATAAGAGGGTTTAAGGTTACAAATAAGCAACACGAACAATTAGCAAGGTTCGTCTTAGACAAGGCGAGGTTCTTAGAGCGTATGGTCCTCCTTTGGCCTAGGAACCGATGCCGTTTATGCCGCGGTGTGCCTTATCTACCTCTCAGTGAGCATGTCAAGTACACCAACATCCTTGTAGGTTGGAAAGTGTCTGCCAGAGCGGAAATTATTTTATGTGACCAAATGGAGGACATGTATAGTTTCCCGAAACATGTGAGGAAATGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

104

Amino Acids

12.55

Weight (kDa)

10.02

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 7 - 45 7.2e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016662)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61320 AT1G61330
malus_domestica MD10G1303300.v1.1
prunus_persica Prupe.4G036700_v2.0.a1
pyrus_communis pycom10g25580
rosa_laevigata RLG00000019732
rosa_roxburghii Rroxscaffold_1G00069650 Rroxscaffold_1G00069660
rosa_rugosa Rorug04G0421300
rosa_samantha Rh2BG409000 Rh5BG048300 Rh5BG427600 Rh5DG047400 Rh5DG047500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 245
AccII CGCG 1 cut(s) 168
AciI CCGC 3 cut(s) 166, 168, 245
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 271
AflIII ACRYGT 2 cut(s) 276, 295
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 130
AvrII CCTAGG 1 cut(s) 143
BceAI ACGGC 1 cut(s) 141
BfaI CTAG 2 cut(s) 144, 313
BisI GCNGC 1 cut(s) 166
BlnI CCTAGG 1 cut(s) 143
BlsI GCNGC 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 149
BmsI GCATC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 143, 166
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 143, 166
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 271
BsnI GGCC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 3 cut(s) 166, 168, 245
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 149
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 143, 166
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 100, 118, 188
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 3 cut(s) 200, 280, 299
BstUI CGCG 1 cut(s) 168
BsuRI GGCC 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 130
Cfr42I CCGCGG 1 cut(s) 169
Csp6I GTAC 1 cut(s) 205
CviAII CATG 3 cut(s) 197, 277, 296
CviJI RGCY 2 cut(s) 18, 142
CviKI_1 RGCY 2 cut(s) 18, 142
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 100, 118, 188
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eco130I CCWWGG 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 3 cut(s) 200, 280, 299
FaiI YATR 8 cut(s) 14, 128, 163, 198, 259, 278, 282, 297
FatI CATG 3 cut(s) 196, 276, 295
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 2 cut(s) 144, 313
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 142
Hin1II CATG 3 cut(s) 200, 280, 299
Hpy166II GTNNAC 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 3 cut(s) 100, 118, 188
Hsp92II CATG 3 cut(s) 200, 280, 299
KspI CCGCGG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 1 cut(s) 253
LweI GCATC 1 cut(s) 143
MaeI CTAG 2 cut(s) 144, 313
MaeIII GTNAC 2 cut(s) 61, 260
MalI GATC 1 cut(s) 6
MbiI CCGCTC 1 cut(s) 245
MboI GATC 1 cut(s) 4
MluCI AATT 3 cut(s) 35, 83, 249
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 7 cut(s) 41, 44, 105, 143, 195, 265, 294
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 2 cut(s) 24, 57
MspA1I CMGCKG 1 cut(s) 168
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 200, 280, 299
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 3 cut(s) 200, 280, 299
PciI ACATGT 2 cut(s) 276, 295
PdmI GAANNNNTTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 167
PscI ACATGT 2 cut(s) 276, 295
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 130
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacII CCGCGG 1 cut(s) 169
SaqAI TTAA 2 cut(s) 24, 57
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 130
SetI ASST 6 cut(s) 20, 63, 95, 116, 187, 226
SfaNI GCATC 1 cut(s) 143
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SinI GGWCC 1 cut(s) 130
Sse9I AATT 3 cut(s) 35, 83, 249
SsiI CCGC 3 cut(s) 166, 168, 245
SspMI CTAG 2 cut(s) 144, 313
StyI CCWWGG 1 cut(s) 143
TasI AATT 3 cut(s) 35, 83, 249
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 168
Tru1I TTAA 2 cut(s) 24, 57
Tru9I TTAA 2 cut(s) 24, 57
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 1 cut(s) 35
XceI RCATGY 3 cut(s) 200, 280, 299
XmaJI CCTAGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 2 cut(s) 144, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.