Rroxscaffold_1G00069660

FBD-associated F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016662
Physical Location & Seq
Forward (+)
90554035 .. 90558226
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069660.1

Sequence Viewer

Length: 633 bp
ATGGTGCCATTTTTCATCCCTACCAATGCGGAAGAGGCAACGCTCAAGGAGCTCAAGTTGTCTTACTCAATGATCCATATGTCGATTAATGCGAAGGCTCGGTGTCTGCGACCACCTTGGTTACGAGGCGAGGTTGATCCGACGAACCCGATCATCGAGGCCGTGTTCGAAAATTGTGCCCATCTCAAGACTTTTGACATAGCTGACTGCTATGGAGTAAGGAATATGAAGGTGAAGGCGAACAAGAGATTTAAGGAGTTAAAGCTGAATGAGAATACTTGTGAGAGCACAATTTACCGCGATATACTGCAGAATCCAGCCATGGATCACAATATGAGCTTCCTTAATGCCCTCAAATTTGTCAAAATAAGAGGGTTTAAGAATCTTCAGTCAAACAATGCTTCCCCACCGTCTTTCACGTCTACACCTCCCCATCCCCACGGTCCACCTGTACTCCTCTCCACGTGTCACAATCCCACCACCTCGTCAACTTTCCTTGACCGTCACCCTATCACCTCCTCACTACCGACACAGCCGACTCAGACCGACCATATCGTCCACGTCACCGCCTGCCCCACACGTGCGCCACCAGATCCCCTTCCTTTTCGGCACGTGTCACGTTCAAACGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

210

Amino Acids

23.58

Weight (kDa)

9.1

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016662)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61320 AT1G61330
malus_domestica MD10G1303300.v1.1
prunus_persica Prupe.4G036700_v2.0.a1
pyrus_communis pycom10g25580
rosa_laevigata RLG00000019732
rosa_roxburghii Rroxscaffold_1G00069650 Rroxscaffold_1G00069660
rosa_rugosa Rorug04G0421300
rosa_samantha Rh2BG409000 Rh5BG048300 Rh5BG427600 Rh5DG047400 Rh5DG047500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 422
AccII CGCG 1 cut(s) 300
AciI CCGC 3 cut(s) 29, 298, 567
AclWI GGATC 4 cut(s) 67, 131, 333, 587
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 371
AcvI CACGTG 3 cut(s) 465, 581, 613
AfaI GTAC 1 cut(s) 453
AflIII ACRYGT 3 cut(s) 464, 578, 612
AgsI TTSAA 1 cut(s) 624
AjiI CACGTC 2 cut(s) 420, 562
AluBI AGCT 4 cut(s) 52, 203, 265, 339
AluI AGCT 4 cut(s) 52, 203, 265, 339
Alw21I GWGCWC 2 cut(s) 54, 290
AlwI GGATC 4 cut(s) 67, 131, 333, 587
AoxI GGCC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 356
AseI ATTAAT 1 cut(s) 87
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 4 cut(s) 244, 497, 505, 556
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 54
BbrPI CACGTG 3 cut(s) 465, 581, 613
Bbv12I GWGCWC 2 cut(s) 54, 290
BccI CCATC 2 cut(s) 189, 441
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BfaI CTAG 1 cut(s) 631
BfmI CTRYAG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 443
BmgBI CACGTC 2 cut(s) 420, 562
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 3 cut(s) 29, 38, 170
BsaAI YACGTR 3 cut(s) 465, 581, 613
BsaJI CCNNGG 3 cut(s) 116, 321, 439
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 438, 468
BseDI CCNNGG 3 cut(s) 116, 321, 439
BseGI GGATG 2 cut(s) 15, 433
BseMII CTCAG 1 cut(s) 554
BseRI GAGGAG 2 cut(s) 446, 508
BseSI GKGCMC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 54, 290
BsnI GGCC 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 54, 181, 290
Bsp143I GATC 5 cut(s) 72, 136, 150, 325, 592
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 3 cut(s) 29, 298, 567
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 312
BspPI GGATC 4 cut(s) 67, 131, 333, 587
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 3 cut(s) 116, 321, 439
BssMI GATC 5 cut(s) 72, 136, 150, 325, 592
BssT1I CCWWGG 2 cut(s) 116, 321
Bst4CI ACNGT 3 cut(s) 411, 443, 503
Bst6I CTCTTC 1 cut(s) 27
BstBAI YACGTR 3 cut(s) 465, 581, 613
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 1 cut(s) 540
BstDSI CCRYGG 2 cut(s) 321, 439
BstF5I GGATG 2 cut(s) 15, 433
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 5 cut(s) 75, 139, 153, 328, 595
BstMBI GATC 5 cut(s) 72, 136, 150, 325, 592
BstMWI GCNNNNNNNGC 2 cut(s) 35, 49
BstSFI CTRYAG 1 cut(s) 308
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BsuRI GGCC 1 cut(s) 161
BtgI CCRYGG 2 cut(s) 321, 439
BtrI CACGTC 2 cut(s) 420, 562
BtsCI GGATG 2 cut(s) 15, 433
Cac8I GCNNGC 1 cut(s) 571
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 452
CviAII CATG 1 cut(s) 322
CviJI RGCY 9 cut(s) 52, 98, 161, 203, 265, 320, 339, 535, 630
CviKI_1 RGCY 9 cut(s) 52, 98, 161, 203, 265, 320, 339, 535, 630
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 1 cut(s) 540
DpnI GATC 5 cut(s) 74, 138, 152, 327, 594
DpnII GATC 5 cut(s) 72, 136, 150, 325, 592
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 116, 321
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 371
Eco72I CACGTG 3 cut(s) 465, 581, 613
EcoICRI GAGCTC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 116, 321
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 116, 321
FaeI CATG 1 cut(s) 325
FaiI YATR 9 cut(s) 78, 80, 200, 213, 227, 305, 323, 335, 552
FatI CATG 1 cut(s) 321
FauNDI CATATG 1 cut(s) 78
FblI GTMKAC 1 cut(s) 422
FokI GGATG 2 cut(s) 2, 420
FriOI GRGCYC 1 cut(s) 54
FspBI CTAG 1 cut(s) 631
GlaI GCGC 1 cut(s) 585
HaeIII GGCC 1 cut(s) 161
HhaI GCGC 1 cut(s) 586
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 3 cut(s) 313, 382, 538
HphI GGTGA 4 cut(s) 244, 497, 505, 556
Hpy166II GTNNAC 4 cut(s) 423, 446, 489, 559
Hpy188I TCNGA 2 cut(s) 141, 543
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 4 cut(s) 423, 446, 489, 559
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 4 cut(s) 88, 223, 229, 608
HpyCH4III ACNGT 3 cut(s) 411, 443, 503
HpyCH4IV ACGT 6 cut(s) 419, 464, 561, 580, 612, 619
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 49
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 6 cut(s) 419, 464, 561, 580, 612, 619
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 1 cut(s) 584
Kzo9I GATC 5 cut(s) 72, 136, 150, 325, 592
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 4 cut(s) 330, 462, 583, 603
MaeI CTAG 1 cut(s) 631
MaeII ACGT 6 cut(s) 419, 464, 561, 580, 612, 619
MaeIII GTNAC 5 cut(s) 120, 467, 503, 562, 615
MalI GATC 5 cut(s) 74, 138, 152, 327, 594
MboI GATC 5 cut(s) 72, 136, 150, 325, 592
MboII GAAGA 2 cut(s) 44, 377
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 3 cut(s) 54, 181, 290
MluCI AATT 3 cut(s) 172, 291, 356
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 164
MseI TTAA 5 cut(s) 87, 252, 260, 345, 378
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 35, 49
NcoI CCATGG 1 cut(s) 321
NdeI CATATG 1 cut(s) 78
NdeII GATC 5 cut(s) 72, 136, 150, 325, 592
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 4 cut(s) 467, 503, 562, 615
NspV TTCGAA 1 cut(s) 168
PcsI WCGNNNNNNNCGW 2 cut(s) 89, 106
PfeI GAWTC 2 cut(s) 313, 382
PleI GAGTC 1 cut(s) 532
PmaCI CACGTG 3 cut(s) 465, 581, 613
PmlI CACGTG 3 cut(s) 465, 581, 613
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 3 cut(s) 465, 581, 613
PshBI ATTAAT 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 54
PspCI CACGTG 3 cut(s) 465, 581, 613
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 443
PstI CTGCAG 1 cut(s) 312
PsuI RGATCY 1 cut(s) 592
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 5 cut(s) 87, 252, 260, 345, 378
Sau3AI GATC 5 cut(s) 72, 136, 150, 325, 592
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 1 cut(s) 532
SduI GDGCHC 3 cut(s) 54, 181, 290
SfcI CTRYAG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 1 cut(s) 443
SmlI CTYRAG 3 cut(s) 44, 53, 185
SmoI CTYRAG 3 cut(s) 44, 53, 185
Sse9I AATT 3 cut(s) 172, 291, 356
SsiI CCGC 3 cut(s) 29, 298, 567
SspMI CTAG 1 cut(s) 631
SstI GAGCTC 1 cut(s) 54
StyI CCWWGG 2 cut(s) 116, 321
TaaI ACNGT 3 cut(s) 411, 443, 503
TaiI ACGT 6 cut(s) 422, 467, 564, 583, 615, 622
TaqI TCGA 3 cut(s) 83, 156, 168
TaqII GACCGA 1 cut(s) 560
TasI AATT 3 cut(s) 172, 291, 356
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 2 cut(s) 313, 382
Tru1I TTAA 5 cut(s) 87, 252, 260, 345, 378
Tru9I TTAA 5 cut(s) 87, 252, 260, 345, 378
TseFI GTSAC 4 cut(s) 467, 503, 562, 615
Tsp45I GTSAC 4 cut(s) 467, 503, 562, 615
TspDTI ATGAA 2 cut(s) 4, 242
VpaK11BI GGWCC 1 cut(s) 443
VspI ATTAAT 1 cut(s) 87
XapI RAATTY 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 422
XspI CTAG 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.