RLG00000019750

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018059
Physical Location & Seq
Reverse (-)
56290760 .. 56292594
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019750

Sequence Viewer

Length: 1467 bp
ATGATAATGAACTGTCTGGTGCTGTTTTCTCTGACCCTCTTGTCAACTTCGATTCGGGTGATGCTGTTGAACAGCAAGACCTCCTCGAAGAACATTGCCATAGCGAGGCTGCTCAATTTGGTGGACTTCGTGTTCGTAGTCACAATCTTCTTCAAGCCTATGAAGTTTGGGACAGTTGTTATTGATTCACTTCTCATGGATAATCTTTATCTTTTCTATGCATCCTTAATTAGGAACCTAAACTCTGAACTTGAGTCCAAGGCAAAAGACGTTAATTCTGCAGAAGCCAAGACAATTTCCATGAGGAAGCAATCTGAAGAATTGGTTCTTGAGCGTGATCGTTTACTTGAGTCATCGGGCAACAGACTCAAACAACTGGAATCTGAGCTCGAGACCAAGACGAGAGACATTAGTCTTGCAAAAGCCAATAATACCGCTCTAAAGAAACAGCTTGATCAGCTTCTTCTCGAGTATGATGTTTTACTCGAGAGAAACCAAATTTTAAAGAATCATTCGGAGTCATTGAACACAAGAGTCAAAGAGCTAGAGTCTGAACTCGAGACTAGGACTAAAGATGTTAAAGTTGCAGAAGCCAATCACATTACTCTAAGGAAGCAATTTGAAAAGAGCCTCCTCGAGAATGACCGTCTGTCTGAATCGAATCAAGTTTTGAACAACCAGTTGCAGTCATCGGGCACGAGACTTCAGCAACTAAAATTTGAACTTGAAACCAAGAGGAATGAAGCTAATGCTGTAGAAGCCAAAATTGTTGCTCTAAGGAAGGAAAAGCAAGATTTAAATATCCAGTTGCAATCAGCCAGCACCAGTCTCAGACGTAAAGAATATGAACTCGAGACTAGGGCAAAGAATGTTACTACAGCCGAAGTGAAGAATTTAGATCTAAGGAGGCAATTAGAATCTGCAAAAGCCATTGCTAATTCCTCGGAGAAAGAAATCCAAAGCTTGAAGAACCAGTTACAGTCATCAGAAATAAAACTCAAGCAAGTAGGATATGAAGCAACCACGGCTCTAAGTAAGGAAAACCAAAGTTTAAAGAGCCAGTTGCAGTTATCCAGCACTAGACTCAAACAACTAGAATCTGCAGAAGCCACTGTTAGTGCTCTAACGAAGAAAATTCAAAGCTTGAAGAACGAGTTACAAACATCAGAAACAAAACTTAAGCAAGTAGGATCTGCAGAAGCAACCACTACGGCTCAAAGTAAGGAAAACCAAAGTTTAAAGAACCAGTTACAGTCATCGAGCACAAAACTCAAACAACTAGAATCTGCAAAAGCCGATGCTGATGCTCTAAGGAAGGCATTGGAAAAAAAACTCGCACAAGTAGAATCTGAAAACCAAAGTTTAAAGAACCGGTTGCTGTCATCAGGATCAAAAAGCGTAAAAGAAGCAAAAGCTCGTACTAGTGCTACTGAAAAATTTGGAAGATTCCTTTTTGACCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

489

Amino Acids

55.11

Weight (kDa)

9.51

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31590
rosa_laevigata RLG00000019750
rosa_multiflora Rmu_ssc0000210.1_g000004
rosa_roxburghii Rroxscaffold_2G00106030
rosa_rugosa Rorug02G0351900
rosa_samantha Rh2AG401200 Rh2BG406400 Rh2CG387300 Rh2CG387400 Rh2DG421500
rosa_wichuraiana Rw2G032620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 437
AciI CCGC 1 cut(s) 435
AclWI GGATC 2 cut(s) 1198, 1396
AcsI RAATTY 5 cut(s) 498, 716, 892, 1134, 1436
AcuI CTGAAG 2 cut(s) 336, 689
AfaI GTAC 1 cut(s) 1420
AfiI CCNNNNNNNGG 2 cut(s) 105, 231
AflII CTTAAG 1 cut(s) 1178
AgeI ACCGGT 1 cut(s) 1371
AhdI GACNNNNNGTC 1 cut(s) 649
AhlI ACTAGT 1 cut(s) 1421
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 8 cut(s) 388, 451, 460, 544, 746, 963, 1143, 1415
AluI AGCT 8 cut(s) 388, 451, 460, 544, 746, 963, 1143, 1415
Alw21I GWGCWC 3 cut(s) 390, 1123, 1265
Alw26I GTCTC 6 cut(s) 386, 399, 554, 694, 833, 848
AlwI GGATC 2 cut(s) 1198, 1396
Ama87I CYCGRG 6 cut(s) 389, 467, 485, 557, 635, 851
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 5 cut(s) 498, 716, 892, 1134, 1436
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AsiGI ACCGGT 1 cut(s) 1371
Asp700I GAANNNNTTC 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 6 cut(s) 389, 467, 485, 557, 635, 851
BaeGI GKGCMC 1 cut(s) 698
BanII GRGCYC 1 cut(s) 390
BauI CACGAG 1 cut(s) 697
Bbv12I GWGCWC 3 cut(s) 390, 1123, 1265
BbvI GCAGC 1 cut(s) 96
BceAI ACGGC 2 cut(s) 1041, 1227
BcgI CGANNNNNNTGC 2 cut(s) 1286, 1320
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 6 cut(s) 386, 399, 554, 694, 833, 848
BcuI ACTAGT 1 cut(s) 1421
BfaI CTAG 7 cut(s) 545, 564, 858, 1080, 1094, 1280, 1422
BfmI CTRYAG 5 cut(s) 279, 753, 876, 1101, 1194
BfrI CTTAAG 1 cut(s) 1178
BglII AGATCT 1 cut(s) 898
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmeRI GACNNNNNGTC 1 cut(s) 649
BmeT110I CYCGRG 6 cut(s) 389, 467, 485, 557, 635, 851
BmiI GGNNCC 1 cut(s) 236
BmsI GCATC 4 cut(s) 51, 230, 1288, 1294
BoxI GACNNNNGTC 1 cut(s) 411
BpuEI CTTGAG 4 cut(s) 272, 350, 368, 983
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 258, 942, 1023
BsaWI WCCGGW 1 cut(s) 1371
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 231
Bse118I RCCGGY 1 cut(s) 1371
Bse1I ACTGG 8 cut(s) 381, 679, 805, 825, 973, 1060, 1246, 1459
Bse3DI GCAATG 2 cut(s) 93, 930
BseDI CCNNGG 3 cut(s) 258, 942, 1023
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 105, 231
BseMI GCAATG 2 cut(s) 93, 930
BseMII CTCAG 2 cut(s) 375, 844
BseNI ACTGG 8 cut(s) 381, 679, 805, 825, 973, 1060, 1246, 1459
BseRI GAGGAG 2 cut(s) 73, 623
BseSI GKGCMC 1 cut(s) 698
BseXI GCAGC 1 cut(s) 96
BshTI ACCGGT 1 cut(s) 1371
BsiHKAI GWGCWC 3 cut(s) 390, 1123, 1265
BsiHKCI CYCGRG 6 cut(s) 389, 467, 485, 557, 635, 851
BsiSI CCGG 1 cut(s) 1372
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 105, 231
BsmAI GTCTC 6 cut(s) 386, 399, 554, 694, 833, 848
BsmFI GGGAC 1 cut(s) 184
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 6 cut(s) 389, 467, 485, 557, 635, 851
Bsp1286I GDGCHC 4 cut(s) 390, 698, 1123, 1265
Bsp143I GATC 5 cut(s) 337, 454, 898, 1190, 1388
BspACI CCGC 1 cut(s) 435
BspCNI CTCAG 2 cut(s) 376, 843
BspLI GGNNCC 1 cut(s) 236
BspMAI CTGCAG 3 cut(s) 283, 1105, 1198
BspPI GGATC 2 cut(s) 1198, 1396
BspTI CTTAAG 1 cut(s) 1178
BspTNI GGTCTC 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 2 cut(s) 93, 930
BsrFI RCCGGY 1 cut(s) 1371
BsrI ACTGG 8 cut(s) 381, 679, 805, 825, 973, 1060, 1246, 1459
BssAI RCCGGY 1 cut(s) 1371
BssECI CCNNGG 3 cut(s) 258, 942, 1023
BssMI GATC 5 cut(s) 337, 454, 898, 1190, 1388
BssSI CACGAG 1 cut(s) 697
BssT1I CCWWGG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 697
Bst4CI ACNGT 6 cut(s) 14, 175, 647, 981, 1114, 1254
BstAFI CTTAAG 1 cut(s) 1178
BstC8I GCNNGC 1 cut(s) 820
BstDEI CTNAG 7 cut(s) 384, 608, 776, 830, 902, 1031, 1310
BstDSI CCRYGG 1 cut(s) 1023
BstENI CCTNNNNNAGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 5 cut(s) 340, 457, 901, 1193, 1391
BstMAI GTCTC 6 cut(s) 386, 399, 554, 694, 833, 848
BstMBI GATC 5 cut(s) 337, 454, 898, 1190, 1388
BstMWI GCNNNNNNNGC 3 cut(s) 457, 758, 1025
BstPAI GACNNNNGTC 1 cut(s) 411
BstSFI CTRYAG 5 cut(s) 279, 753, 876, 1101, 1194
BstSLI GKGCMC 1 cut(s) 698
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 898, 1190
BstYI RGATCY 2 cut(s) 898, 1190
BtgI CCRYGG 1 cut(s) 1023
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 1110
Cac8I GCNNGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 1371
Csp6I GTAC 1 cut(s) 1419
CspAI ACCGGT 1 cut(s) 1371
CviAII CATG 2 cut(s) 196, 301
CviQI GTAC 1 cut(s) 1419
DdeI CTNAG 7 cut(s) 384, 608, 776, 830, 902, 1031, 1310
DpnI GATC 5 cut(s) 339, 456, 900, 1192, 1390
DpnII GATC 5 cut(s) 337, 454, 898, 1190, 1388
DraI TTTAAA 5 cut(s) 504, 798, 1053, 1239, 1365
DrdI GACNNNNNNGTC 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 649
DseDI GACNNNNNNGTC 1 cut(s) 40
Eam1105I GACNNNNNGTC 1 cut(s) 649
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 336, 689
Eco88I CYCGRG 6 cut(s) 389, 467, 485, 557, 635, 851
EcoICRI GAGCTC 1 cut(s) 388
EcoNI CCTNNNNNAGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 2 cut(s) 199, 304
FaiI YATR 8 cut(s) 101, 161, 197, 219, 302, 474, 846, 1014
FaqI GGGAC 1 cut(s) 184
FatI CATG 2 cut(s) 195, 300
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 7 cut(s) 545, 564, 858, 1080, 1094, 1280, 1422
GluI GCNGC 1 cut(s) 110
HapII CCGG 1 cut(s) 1372
Hin1II CATG 2 cut(s) 199, 304
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 2 cut(s) 961, 1141
HpaII CCGG 1 cut(s) 1372
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 3 cut(s) 45, 124, 344
Hpy188III TCNNGA 8 cut(s) 329, 391, 467, 487, 559, 637, 853, 1386
Hpy8I GTNNAC 3 cut(s) 45, 124, 344
HpyAV CCTTC 2 cut(s) 775, 1309
HpyCH4III ACNGT 6 cut(s) 14, 175, 647, 981, 1114, 1254
HpyCH4IV ACGT 2 cut(s) 270, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 457, 758, 1025
HpyF3I CTNAG 7 cut(s) 384, 608, 776, 830, 902, 1031, 1310
HpySE526I ACGT 2 cut(s) 270, 835
Hsp92II CATG 2 cut(s) 199, 304
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 5 cut(s) 337, 454, 898, 1190, 1388
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 4 cut(s) 51, 230, 1288, 1294
MaeI CTAG 7 cut(s) 545, 564, 858, 1080, 1094, 1280, 1422
MaeII ACGT 2 cut(s) 270, 835
MaeIII GTNAC 5 cut(s) 139, 871, 975, 1155, 1248
MalI GATC 5 cut(s) 339, 456, 900, 1192, 1390
MbiI CCGCTC 1 cut(s) 437
MboI GATC 5 cut(s) 337, 454, 898, 1190, 1388
MflI RGATCY 2 cut(s) 898, 1190
MhlI GDGCHC 4 cut(s) 390, 698, 1123, 1265
MlyI GAGTC 7 cut(s) 263, 359, 360, 527, 543, 557, 1077
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 9 cut(s) 227, 273, 503, 579, 797, 1052, 1179, 1238, 1364
MspCI CTTAAG 1 cut(s) 1178
MspI CCGG 1 cut(s) 1372
MwoI GCNNNNNNNGC 3 cut(s) 457, 758, 1025
NdeII GATC 5 cut(s) 337, 454, 898, 1190, 1388
NlaIII CATG 2 cut(s) 199, 304
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 223
PaeR7I CTCGAG 6 cut(s) 389, 467, 485, 557, 635, 851
PdmI GAANNNNTTC 1 cut(s) 324
PinAI ACCGGT 1 cut(s) 1371
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 7 cut(s) 262, 358, 360, 526, 542, 556, 1077
PpsI GAGTC 7 cut(s) 262, 358, 360, 526, 542, 556, 1077
PshAI GACNNNNGTC 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 390
PspN4I GGNNCC 1 cut(s) 236
PstI CTGCAG 3 cut(s) 283, 1105, 1198
PsuI RGATCY 2 cut(s) 898, 1190
RsaI GTAC 1 cut(s) 1420
RsaNI GTAC 1 cut(s) 1419
SacI GAGCTC 1 cut(s) 390
SaqAI TTAA 9 cut(s) 227, 273, 503, 579, 797, 1052, 1179, 1238, 1364
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 5 cut(s) 337, 454, 898, 1190, 1388
SchI GAGTC 7 cut(s) 263, 359, 360, 527, 543, 557, 1077
SduI GDGCHC 4 cut(s) 390, 698, 1123, 1265
SfaNI GCATC 4 cut(s) 51, 230, 1288, 1294
SfcI CTRYAG 5 cut(s) 279, 753, 876, 1101, 1194
Sfr274I CTCGAG 6 cut(s) 389, 467, 485, 557, 635, 851
SlaI CTCGAG 6 cut(s) 389, 467, 485, 557, 635, 851
SmiI ATTTAAAT 1 cut(s) 798
SpeI ACTAGT 1 cut(s) 1421
SsiI CCGC 1 cut(s) 435
SspMI CTAG 7 cut(s) 545, 564, 858, 1080, 1094, 1280, 1422
SstI GAGCTC 1 cut(s) 390
StyI CCWWGG 1 cut(s) 258
SwaI ATTTAAAT 1 cut(s) 798
TaaI ACNGT 6 cut(s) 14, 175, 647, 981, 1114, 1254
TaiI ACGT 2 cut(s) 273, 838
Tru1I TTAA 9 cut(s) 227, 273, 503, 579, 797, 1052, 1179, 1238, 1364
Tru9I TTAA 9 cut(s) 227, 273, 503, 579, 797, 1052, 1179, 1238, 1364
TscAI CASTG 1 cut(s) 1117
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 5 cut(s) 23, 176, 756, 861, 1029
TspRI CASTG 1 cut(s) 1117
Vha464I CTTAAG 1 cut(s) 1178
XagI CCTNNNNNAGG 1 cut(s) 229
XapI RAATTY 5 cut(s) 498, 716, 892, 1134, 1436
XhoI CTCGAG 6 cut(s) 389, 467, 485, 557, 635, 851
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 7 cut(s) 545, 564, 858, 1080, 1094, 1280, 1422
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.