Rh2CG387400

B-cell receptor-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
52850629 .. 52852739
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG387400.1

Sequence Viewer

Length: 612 bp
ATGGCCATAGCGAGGCTGCTCAACTTGGTGGACTTCGTGTTCGTAGTCACAATCTTCTTCAAGCCTATGAAGTTTGGGACAGTTGTTATTGATTCACTTCTGATGGGATTCTACTGCTCCCTTGCTTTTAAGATGAATGGACTTTGCCAGAACATCAGGAACCTAAACTCTGAACTTGAGTCCAAGGCAAAAGACGTTAATTCTGCAGAAGCCAAGACAATTTCCATGAGGAAGCAATCTGAAGAATTGGTTCTTGCACGTGATTGTTTACTTGAGTCATCGGGCACCAGACTCAAACAACTGGAATCTGAGCTCGAGACCAAGACGAGAGACATTAGTGTTGCAAAAGCCAATAATACCGCTCTGAAGAAACAGCTTGATCAGCTTCTTCTCGAGTATGATTTTTTACTGGAGAGAAACCAAATTATAAAGAATCAGTCGGAGTCATTGAACACAAGAGTCAAAGAGCTAGAGGCTGAAGTGGAGACTATGACGAAAGATGTTAAAGTTGCAGAAGCCAATCACATTACTCTAAGGAAGCAACTTGAAAAGAGCCTCCTCGAGAATGACCGTCTATCTGAATCGAATCAAGTTTTGAACCACCAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

203

Amino Acids

23.15

Weight (kDa)

6.21

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31590
rosa_laevigata RLG00000019750
rosa_multiflora Rmu_ssc0000210.1_g000004
rosa_roxburghii Rroxscaffold_2G00106030
rosa_rugosa Rorug02G0351900
rosa_samantha Rh2AG401200 Rh2BG406400 Rh2CG387300 Rh2CG387400 Rh2DG421500
rosa_wichuraiana Rw2G032620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 362
AciI CCGC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 3 cut(s) 261, 386, 498
AcvI CACGTG 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 4 cut(s) 61, 451, 548, 598
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 4 cut(s) 313, 376, 385, 469
AluI AGCT 4 cut(s) 313, 376, 385, 469
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 311, 324, 479
Ama87I CYCGRG 3 cut(s) 314, 392, 560
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 16
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp700I GAANNNNTTC 1 cut(s) 249
AvaI CYCGRG 3 cut(s) 314, 392, 560
BaeGI GKGCMC 1 cut(s) 287
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 315
BbrPI CACGTG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 3
BccI CCATC 1 cut(s) 97
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 3 cut(s) 311, 324, 479
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
BmeT110I CYCGRG 3 cut(s) 314, 392, 560
BmiI GGNNCC 2 cut(s) 161, 286
BpmI CTGGAG 1 cut(s) 431
BpuEI CTTGAG 2 cut(s) 197, 293
BsaAI YACGTR 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 3 cut(s) 306, 414, 604
BseDI CCNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 3 cut(s) 306, 414, 604
BseRI GAGGAG 1 cut(s) 548
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 3 cut(s) 314, 392, 560
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 3 cut(s) 311, 324, 479
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 311
BsoBI CYCGRG 3 cut(s) 314, 392, 560
Bsp1286I GDGCHC 2 cut(s) 287, 315
Bsp143I GATC 1 cut(s) 379
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 161, 286
BspMAI CTGCAG 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 362
BsrI ACTGG 3 cut(s) 306, 414, 604
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 82, 572
BstBAI YACGTR 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 309, 533
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 3 cut(s) 311, 324, 479
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 5
CviAII CATG 1 cut(s) 226
DdeI CTNAG 2 cut(s) 309, 533
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 3 cut(s) 261, 386, 498
Eco72I CACGTG 1 cut(s) 260
Eco88I CYCGRG 3 cut(s) 314, 392, 560
EcoICRI GAGCTC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 229
FaiI YATR 6 cut(s) 8, 68, 227, 399, 428, 491
FaqI GGGAC 1 cut(s) 91
FatI CATG 1 cut(s) 225
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 470
GluI GCNGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 229
Hpy166II GTNNAC 2 cut(s) 31, 269
Hpy188I TCNGA 7 cut(s) 102, 172, 241, 310, 366, 442, 580
Hpy188III TCNNGA 4 cut(s) 157, 316, 392, 562
Hpy8I GTNNAC 2 cut(s) 31, 269
HpyCH4III ACNGT 2 cut(s) 82, 572
HpyCH4IV ACGT 2 cut(s) 195, 259
HpyCH4V TGCA 4 cut(s) 206, 257, 344, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 309, 533
HpySE526I ACGT 2 cut(s) 195, 259
Hsp92II CATG 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 5 cut(s) 142, 161, 287, 301, 395
Lsp1109I GCAGC 1 cut(s) 3
MaeI CTAG 1 cut(s) 470
MaeII ACGT 2 cut(s) 195, 259
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 381
MbiI CCGCTC 1 cut(s) 362
MboI GATC 1 cut(s) 379
MboII GAAGA 5 cut(s) 46, 49, 254, 379, 380
MhlI GDGCHC 2 cut(s) 287, 315
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 199, 219, 245, 423
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 5 cut(s) 188, 284, 285, 452, 468
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 5 cut(s) 6, 222, 466, 566, 569
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 129, 198, 504
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 382
NdeII GATC 1 cut(s) 379
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 161, 286
NmuCI GTSAC 1 cut(s) 46
PaeR7I CTCGAG 3 cut(s) 314, 392, 560
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 6 cut(s) 92, 108, 305, 433, 581, 586
PkrI GCNGC 1 cut(s) 18
PleI GAGTC 5 cut(s) 187, 283, 285, 451, 467
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 5 cut(s) 187, 283, 285, 451, 467
Ppu21I YACGTR 1 cut(s) 260
PsiI TTATAA 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 315
PspCI CACGTG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 161, 286
PstI CTGCAG 1 cut(s) 208
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 129, 198, 504
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 1 cut(s) 379
SchI GAGTC 5 cut(s) 188, 284, 285, 452, 468
SduI GDGCHC 2 cut(s) 287, 315
SetI ASST 7 cut(s) 165, 198, 262, 315, 378, 387, 471
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 3 cut(s) 314, 392, 560
SlaI CTCGAG 3 cut(s) 314, 392, 560
SmlI CTYRAG 5 cut(s) 176, 272, 314, 392, 560
SmoI CTYRAG 5 cut(s) 176, 272, 314, 392, 560
Sse9I AATT 4 cut(s) 199, 219, 245, 423
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 470
SstI GAGCTC 1 cut(s) 315
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 82, 572
TaiI ACGT 2 cut(s) 198, 262
TaqI TCGA 4 cut(s) 315, 393, 561, 584
TasI AATT 4 cut(s) 199, 219, 245, 423
TfiI GAWTC 6 cut(s) 92, 108, 305, 433, 581, 586
Tru1I TTAA 3 cut(s) 129, 198, 504
Tru9I TTAA 3 cut(s) 129, 198, 504
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 83, 149
XhoI CTCGAG 3 cut(s) 314, 392, 560
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.